Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20busckii_20[refseq_20GCF_5F001277935.1_202015-09-02] 6 sequences; 135,748,557 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq2 279 6e-70 seq1 118 1e-21 seq4 116 4e-21 >seq2 Length=22510139 Score = 279 bits (308), Expect = 6e-70 Identities = 604/891 (68%), Gaps = 17/891 (2%) Strand=Plus/Minus Query 92742 TTAGAAATCTGCATCTAGTGTAAATACATTGTCAAGTGGATTCTTATTCATAACACCACA 92801 ||| ||||||||||||| |||||| ||||| || || ||||| | | |||| || Sbjct 3319362 TTAAAAATCTGCATCTAATGTAAACACATTATCCAGACGATTCGAGGTGA---CACC-CA 3319307 Query 92802 TTT-TTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGATATCG 92860 | ||| || || || ||||| || |||||||| || || ||||| ||||| || ||| Sbjct 3319306 TGCGTTGATACTCGCCCACTTTCTTCTCAAAGAAGTTAGTTTTTCCGTCCAACGAAATCA 3319247 Query 92861 AATTCACTAGTG--ATTGGATTCTTGGCGTTATAATACTTTTCACCGATCAA-CTCGTAC 92917 | || | || | ||||||||| | ||||| | ||||| | | ||| ||| | Sbjct 3319246 TTTCCATGAATGTCAATGGATTCTTTGTATTATAG-ATTTTTCCCACACCAAGCTCCACC 3319188 Query 92918 AATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGA 92977 | | | |||||| || || || ||||||| ||||||| | | || ||||| || | Sbjct 3319187 AGCAGGCGATCAGCCACGAACTCAATGTACTCTGACATCAGAGCGCAGTTCATGCCAATC 3319128 Query 92978 AGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAG 93037 | || || ||||| || || | ||| || | || || || || || | | Sbjct 3319127 AAGTTAACTGGCAGAGCATCTGTGAGGAACTCCTGTTCAATCTTGACAGCATCCTCAATA 3319068 Query 93038 ATTTCTATTA--CTCT-ACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCAC 93094 ||| | || | | || || | || ||| | || | || | |||| || ||| Sbjct 3319067 ATTGCAATGATGCGCTCACGGCTGGGACGTT---GCACCAAATGGCGGAACATCAA-CAC 3319012 Query 93095 G-CAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACC 93153 | ||||||| || || || || || || || || | ||||||| ||| || || || Sbjct 3319011 GGCAAAGTCACAGTGCAAGCCCTCATCGCGCGAGATTAGCTCATTGGAGAAGGTCAAGCC 3318952 Query 93154 TGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTAT 93213 || | || || || ||||| ||||| || || || || || || || ||| || || Sbjct 3318951 AGGCATGAGGCCACGCTTCTTTAGCCAGAAAATGGAGGCGAAGCTGCCGCTAAAGAAAAT 3318892 Query 93214 ACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGAT 93273 || || ||||| || || || | ||| || ||| |||| || || | || | || Sbjct 3318891 GCCCTCAACGGCGGCGAAGGCAATAATCCGCTCGCCAAAGTTGGCAGCCTTGGAGGATAT 3318832 Query 93274 CCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAA 93333 |||| ||| ||||| || || || ||| | | || | |||||| || || || || Sbjct 3318831 CCATGATAATGCCCAGTCAGCCTTGCGCTTCACAGCCGGCATTGTTTCAATTGCATTGAA 3318772 Query 93334 TAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTC 93393 || || || |||| | | ||| || | || ||||| || | || | |||||| || Sbjct 3318771 CAGATAGTCACGCTGTTGGGGATCACGGACATACGTATCAATGAGCACACTATACATCTC 3318712 Query 93394 AGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTG 93453 || |||||||||||||| ||||| |||||||| || || || | || || || ||||| Sbjct 3318711 CGAGTGGACATTCTCCATCGCAATCTGGAATCCATAAAAGCAGCGTGCCTCTGTTATCTG 3318652 Query 93454 CACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaa 93513 |||||||||| ||| | ||| || || || |||||||| || ||||| || ||||| || Sbjct 3318651 CACTTCTTGACTAAAGCGCTCAACCAGGTTCTCATTGACAATGCCATCAGAGGCTGCGAA 3318592 Query 93514 aaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGA 93573 ||| ||||| | ||| ||||| || ||||| ||| |||| ||||| || | Sbjct 3318591 AAATGCCAACACATGTGAAATAAAGTGACGCTCATTGTCTGTAAGACGTTCCCAGTCAGT 3318532 Query 93574 TAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGC 93624 | || || || ||||| |||||||| ||||||||||| || ||||| || Sbjct 3318531 CATGTCCTTAGACAGATCCACTTCTTCCACAGTCCAAAATGAGGCTTCGGC 3318481 >seq1 Length=33300182 Score = 118 bits (130), Expect = 1e-21 Identities = 79/87 (91%), Gaps = 1/87 (1%) Strand=Plus/Minus Query 126263 ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC-GGGAG 126321 |||||||| ||||||||| ||||||||||||||| |||||| |||||||| ||| | ||| Sbjct 32760155 ACAGTCAGATTGGCCGAGCGGTCTAAGGCGCCAGGTTTAAGTTCTGGTTCTCTCTGAGAG 32760096 Query 126322 CGTGGGTTCGAACCCCACACCTGACAA 126348 ||||||||||||||||||| ||||||| Sbjct 32760095 CGTGGGTTCGAACCCCACATCTGACAA 32760069 >seq4 Length=26871514 Score = 116 bits (128), Expect = 4e-21 Identities = 78/86 (91%), Gaps = 2/86 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 |||||||||||||||| |||||||||||||||||||||| |||||||| | | |||| Sbjct 16775801 AGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCTCGAGAGAGAGC 16775860 Query 126323 GTGGGTTCGAACCCCACACCTGACAA 126348 |||||||||||||||||||||||||| Sbjct 16775861 GTGGGTTCGAACCCCACACCTGACAA 16775886 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556860758235440