Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20busckii_20[refseq_20GCF_5F001277935.1_202015-09-02] 6 sequences; 135,748,557 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq5 131 1e-25 seq1 127 2e-24 seq3 114 1e-20 >seq5 Length=23724088 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 |||||||| ||||| || ||||||||||| || || || |||| | ||||| || | Sbjct 5413569 AAGATGCAGATTTTCGTCAAAACTTTAACTGGCAAGACAATCACCTTGGAAGTTGAGCCT 5413628 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | |||||| | || || |||| || ||||| ||||||||||||||||| || || Sbjct 5413629 TCTGATACCATTGAGAATGTCAAGGCCAAGATTCAGGACAAGGAGGGTATTCCCCCAGAC 5413688 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || ||| | || ||||| ||||| ||| | |||||| || || | || ||||| Sbjct 5413689 CAGCAGCGTTTGATTTTTGCTGGCAAGCAGCTTGAGGATGGACGTACTCTTTCTGATTAT 5413748 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||| || || || || ||| | || || || ||||| |||| || || Sbjct 5413749 AACATCCAGAAGGAGTCAACCCTCCACTTGGTGTTGCGTCTGCGTGGTGG 5413798 >seq1 Length=33300182 Score = 127 bits (140), Expect = 2e-24 Identities = 159/217 (73%), Gaps = 1/217 (0%) Strand=Plus/Plus Query 22211 TTGTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGG 22270 |||||| |||||| || || |||||||| | || ||||| || |||||||||| || | Sbjct 5269235 TTGTAA-GATGCAGATCTTCGTTAAAACCCTTACGGGTAAGACCATCACTCTTGAGGTCG 5269293 Query 22271 AAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCAC 22330 || | | ||||| | || || ||||| || ||||| ||||| || || ||||| | Sbjct 5269294 AACCATCGGATACTATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCTC 5269353 Query 22331 CCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCG 22390 | |||||||||||| | || || || ||||| || || || ||| || || | |||| Sbjct 5269354 CAGATCAACAACGTTTAATCTTCGCTGGCAAGCAATTGGAAGATGGTCGTACTCTGTCCG 5269413 Query 22391 ATTACAACATTCAAAAAGAATCCACCATACATTTAGT 22427 | || || |||||||| || |||||| | || || || Sbjct 5269414 ACTATAATATTCAAAAGGAGTCCACCCTGCACTTGGT 5269450 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 ||||||||||| ||||| ||||| | ||||| || || |||| | || || || || Sbjct 90887 AAGATGCAAATCTTTGTGAAAACCCTCACCGGCAAGACCATCACCTTGGAGGTCGAGCCC 90828 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || ||| | || || |||| || || |||||||| ||||| ||||| || ||| Sbjct 90827 TCTGACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAAGAGGGAATTCCCCCAGAT 90768 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || ||| | || || |||||||| ||| | || ||| ||| || | ||||| ||| Sbjct 90767 CAGCAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAAGATGGCCGTACTCTGTCCGACTAC 90708 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| || || || || || | || || || | || |||| || ||| Sbjct 90707 AACATCCAGAAGGAGTCGACTCTGCACTTGGTGCTCCGTCTGCGTGGTGGT 90657 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 ||||||||||| ||||| ||||| | ||||| || || |||| | || || || || Sbjct 2542725 AAGATGCAAATCTTTGTGAAAACCCTCACCGGCAAGACCATCACCTTGGAGGTCGAGCCC 2542784 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || ||| | || || |||| || || |||||||| ||||| ||||| || ||| Sbjct 2542785 TCTGACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAAGAGGGAATTCCCCCAGAT 2542844 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || ||| | || || |||||||| ||| | || ||| ||| || | ||||| ||| Sbjct 2542845 CAGCAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAAGATGGCCGTACTCTGTCCGACTAC 2542904 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| || || || || || | || || || | || |||| || ||| Sbjct 2542905 AACATCCAGAAGGAGTCGACTCTGCACTTGGTGCTCCGTCTGCGTGGTGGT 2542955 >seq3 Length=28180402 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || || || || || || |||| | || || || ||| | Sbjct 22370159 ATGCAGATCTTTGTGAAGACATTGACTGGCAAGACCATCACCTTGGAGGTTGAGCCCAGC 22370100 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || | || || || |||||||||||||| || || || || || Sbjct 22370099 GACACCATTGAGAATGTGAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAG 22370040 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || |||||||| ||||| |||||| ||||| | ||||| |||||| Sbjct 22370039 CAGCGTCTGATCTTCGCCGGCAAGCAGTTGGAGGATGGACGCACTCTGTCCGACTACAAC 22369980 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| || || || ||| | || || || | || |||| || ||| Sbjct 22369979 ATTCAGAAGGAGTCAACCCTCCACTTGGTGCTCCGTCTGCGTGGTGGT 22369932 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || || || |||| | || || || ||| | Sbjct 22368791 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCTTGGAGGTTGAGCCCAGC 22368732 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || | || || || |||||||||||||| || || || || || Sbjct 22368731 GACACCATTGAGAATGTGAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAG 22368672 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || |||||||| ||||| |||||| ||||| | ||||| |||||| Sbjct 22368671 CAGCGTCTGATCTTCGCCGGCAAGCAGTTGGAGGATGGACGCACTCTGTCCGACTACAAC 22368612 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||| || || || ||| | || || ||| | || |||| || || Sbjct 22368611 ATTCAGAAGGAGTCTACCCTTCACTTGGTTCTCCGTCTGCGTGGTGG 22368565 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || || || |||| | || || || ||| | Sbjct 22369019 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCTTGGAGGTTGAGCCCAGC 22368960 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || | || || || |||||||||||||| || || || || || Sbjct 22368959 GACACCATTGAGAATGTGAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAG 22368900 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || |||||||| ||||| |||||| ||||| | ||||| |||||| Sbjct 22368899 CAGCGTCTGATCTTCGCCGGCAAGCAGTTGGAGGATGGACGCACTCTGTCCGACTACAAC 22368840 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| || || || ||| | || || || | || |||| || ||| Sbjct 22368839 ATTCAGAAGGAGTCTACCCTCCACTTGGTGCTCCGTCTGCGTGGTGGT 22368792 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || || || |||| | || || || ||| | Sbjct 22369247 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCTTGGAGGTTGAGCCCAGC 22369188 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || | || || || |||||||||||||| || || || || || Sbjct 22369187 GACACCATTGAGAATGTGAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAG 22369128 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || |||||||| ||||| |||||| ||||| | ||||| |||||| Sbjct 22369127 CAGCGTCTGATCTTCGCCGGCAAGCAGTTGGAGGATGGACGCACTCTGTCCGACTACAAC 22369068 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| || || || ||| | || || || | || |||| || ||| Sbjct 22369067 ATTCAGAAGGAGTCTACCCTCCACTTGGTGCTCCGTCTGCGTGGTGGT 22369020 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || || || |||| | || || || ||| | Sbjct 22369475 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCTTGGAGGTTGAGCCCAGC 22369416 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || | || || || |||||||||||||| || || || || || Sbjct 22369415 GACACCATTGAGAATGTGAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAG 22369356 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || |||||||| ||||| |||||| ||||| | ||||| |||||| Sbjct 22369355 CAGCGTCTGATCTTCGCCGGCAAGCAGTTGGAGGATGGACGCACTCTGTCCGACTACAAC 22369296 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| || || || ||| | || || || | || |||| || ||| Sbjct 22369295 ATTCAGAAGGAGTCTACCCTCCACTTGGTGCTCCGTCTGCGTGGTGGT 22369248 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || || || |||| | || || || ||| | Sbjct 22369703 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCTTGGAGGTTGAGCCCAGC 22369644 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || | || || || |||||||||||||| || || || || || Sbjct 22369643 GACACCATTGAGAATGTGAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAG 22369584 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || |||||||| ||||| |||||| ||||| | ||||| |||||| Sbjct 22369583 CAGCGTCTGATCTTCGCCGGCAAGCAGTTGGAGGATGGACGCACTCTGTCCGACTACAAC 22369524 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| || || || ||| | || || || | || |||| || ||| Sbjct 22369523 ATTCAGAAGGAGTCTACCCTCCACTTGGTGCTCCGTCTGCGTGGTGGT 22369476 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || || || |||| | || || || ||| | Sbjct 22369931 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCTTGGAGGTTGAGCCCAGC 22369872 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || | || || || |||||||||||||| || || || || || Sbjct 22369871 GACACCATTGAGAATGTGAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAG 22369812 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || |||||||| ||||| |||||| ||||| | ||||| |||||| Sbjct 22369811 CAGCGTCTGATCTTCGCCGGCAAGCAGTTGGAGGATGGACGCACTCTGTCCGACTACAAC 22369752 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| || || || ||| | || || || | || |||| || ||| Sbjct 22369751 ATTCAGAAGGAGTCTACCCTCCACTTGGTGCTCCGTCTGCGTGGTGGT 22369704 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419727969307390