Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20busckii_20[refseq_20GCF_5F001277935.1_202015-09-02] 6 sequences; 135,748,557 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq1 100 6e-16 seq2 95.1 2e-14 seq4 91.5 3e-13 >seq1 Length=33300182 Score = 100 bits (110), Expect = 6e-16 Identities = 211/313 (67%), Gaps = 4/313 (1%) Strand=Plus/Plus Query 218563 GAGCGTTCTATTCCCAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTT 218622 || ||||| || ||||| ||||||||||||| ||||| ||||| ||| | | ||| Sbjct 19593645 GAACGTTCCATACCCAGTATGGTGGATGGCCTTAAGCCTGGACAGCGCAAGGTTATGTTT 19593704 Query 218623 GCCGCATTCAAGCGGAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTA 218682 | |||||||| ||| | || |||| || || || | ||||| | ||| Sbjct 19593705 ACTTGCTTCAAGCGTAACGACAAACGTGAGGTTAAAGTGGCACAACTCTCTGGCTCTGTG 19593764 Query 218683 TCCGAAATTTCTGGCTACCATCACGGTGAGCAGAGTC--TGCAGGGTGCCATTGTAGGCA 218740 | || |||| ||| |||||||| ||| | ||| ||||| | ||||| Sbjct 19593765 GCAGAGCAGTCTGCCTATCATCACGGCGAG--GTGTCATTGCAGATGACTATTGTCAATT 19593822 Query 218741 TGGCACAGGACTATGTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTG 218800 |||||||| ||| ||||||| ||||| || || || || ||| |||||||| | Sbjct 19593823 TGGCACAGAACTTTGTGGGCTCGAACAATATTAATTTACTAGAGCCCCGTGGTCAGTTCG 19593882 Query 218801 GTTCTCGTCTATTGGGTGGAAAGGATAGTGCTTCTGCCAGGTATATCTTTACAAAGTTGT 218860 || | |||||| ||||| |||||||| ||| || | ||||| || || | | ||| Sbjct 19593883 GTACACGTCTAACAGGTGGCAAGGATAGCGCTAGCGCTCGTTATATATTCACTATGATGT 19593942 Query 218861 CGCCCGTGACGCG 218873 | || ||||||| Sbjct 19593943 CACCATTGACGCG 19593955 Score = 91.5 bits (100), Expect = 3e-13 Identities = 67/78 (86%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 1513718 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 1513777 Query 142564 CCCACATCGGGCAGAAGT 142581 ||||| | |||| |||| Sbjct 1513778 CCCACGTTGGGCGAAAGT 1513795 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 1510588 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 1510647 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 1510648 CCCACGTTGGGC 1510659 Score = 84.2 bits (92), Expect = 4e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 142057 CTGTGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGACCCCCG 142116 || ||||||| ||| ||||||||||||||||||||||||||| |||||||||| ||||| Sbjct 1228394 CTTTGGCGCAGCGGATAGCGCGTTGGACTTCTAATCCAAAGGTCGCGGGTTCGATCCCCG 1228453 Query 142117 CCAG 142120 | || Sbjct 1228454 CAAG 1228457 Score = 84.2 bits (92), Expect = 4e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 142057 CTGTGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGACCCCCG 142116 || ||||||| ||| ||||||||||||||||||||||||||| |||||||||| ||||| Sbjct 1344788 CTTTGGCGCAGCGGATAGCGCGTTGGACTTCTAATCCAAAGGTCGCGGGTTCGATCCCCG 1344847 Query 142117 CCAG 142120 | || Sbjct 1344848 CAAG 1344851 Score = 84.2 bits (92), Expect = 4e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 142057 CTGTGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGACCCCCG 142116 || ||||||| ||| ||||||||||||||||||||||||||| |||||||||| ||||| Sbjct 1429935 CTTTGGCGCAGCGGATAGCGCGTTGGACTTCTAATCCAAAGGTCGCGGGTTCGATCCCCG 1429994 Query 142117 CCAG 142120 | || Sbjct 1429995 CAAG 1429998 >seq2 Length=22510139 Score = 95.1 bits (104), Expect = 2e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 ||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||| Sbjct 20402826 ATAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCG 20402767 Query 142561 AGCCCCACATCGGGC 142575 |||||||| | |||| Sbjct 20402766 AGCCCCACGTTGGGC 20402752 Score = 95.1 bits (104), Expect = 2e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 ||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||| Sbjct 20403074 ATAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCG 20403133 Query 142561 AGCCCCACATCGGGC 142575 |||||||| | |||| Sbjct 20403134 AGCCCCACGTTGGGC 20403148 Score = 91.5 bits (100), Expect = 3e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 20384770 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 20384711 Query 142564 CCCACATCGGGCAGA 142578 ||||| | |||| || Sbjct 20384710 CCCACGTTGGGCGGA 20384696 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 21464550 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 21464609 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 21464610 CCCCACGTTGGGC 21464622 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 500129 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 500070 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 500069 CCCACGTTGGGC 500058 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142052 TGTCTCTGTGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGAC 142111 |||| || ||||||| ||| ||||||||||||||||||||||||||| |||||||||| Sbjct 6720150 TGTCCCTTTGGCGCAGAGGATAGCGCGTTGGACTTCTAATCCAAAGGTCGCGGGTTCGAT 6720209 Query 142112 CCCCGCCAGAGA 142123 |||||| || || Sbjct 6720210 CCCCGCAAGGGA 6720221 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 11429031 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 11429090 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 11429091 CCCACGTTGGGC 11429102 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 11429442 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 11429501 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 11429502 CCCACGTTGGGC 11429513 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 18893645 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 18893704 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 18893705 CCCACGTTGGGC 18893716 >seq4 Length=26871514 Score = 91.5 bits (100), Expect = 3e-13 Identities = 67/78 (86%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 || |||||| |||||||||||||||||| ||||||||||||| ||||||||||||| Sbjct 25768579 ATTGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCG 25768520 Query 142561 AGCCCCACATCGGGCAGA 142578 |||||||| | |||| || Sbjct 25768519 AGCCCCACGTTGGGCGGA 25768502 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027836720985046