Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20busckii_20[refseq_20GCF_5F001277935.1_202015-09-02] 6 sequences; 135,748,557 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq2 172 1e-37 >seq2 Length=22510139 Score = 172 bits (190), Expect = 1e-37 Identities = 475/714 (67%), Gaps = 23/714 (3%) Strand=Plus/Plus Query 42424 TGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGA 42483 |||| || ||||| |||||||| ||||| |||||||||||||||| | || | Sbjct 3318584 TGGCATTTTTCGCAGCCTCTGATGGCATTGTCAATGAGAACCTGGTTGAGCGCTTTAGTC 3318643 Query 42484 AAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACG 42543 |||| |||||| ||||| |||||||| || || |||||||| || || ||||| | Sbjct 3318644 AAGAAGTGCAGATAACAGAGGCACGCTGCTTTTATGGATTCCAGATTGCGATGGAGAATG 3318703 Query 42544 TGCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGGATCCCGTCGAGC 42600 | ||||| ||| |||| | |||||| | ||||| ||| |||||| ||| Sbjct 3318704 TCCACTCGGAGATGTA---TAGTGTGCTCATTGATACGTATGTCCGTGATCCCCAACAGC 3318760 Query 42601 GTAACGGGCTGTTCAAGGCCATGGAGACGATGCC--CTGCATCAAGAAGAAGGCGGACTG 42658 || || |||||||| || || || || ||||| ||| | ||| ||||| ||||| Sbjct 3318761 GTGACTATCTGTTCAATGCAATTGAAACAATGCCGGCTG--TGAAGCGCAAGGCTGACTG 3318818 Query 42659 GGCGCTCAACTGGATCGAGAGTCC--CGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTT 42716 ||| | ||||| | ||| | || | || |||||| || | | ||||| Sbjct 3318819 GGCATTATCATGGAT--ATCCTCCAAGGCTGCCAACTTTGGCGAGCGGATTATTGCCTTC 3318876 Query 42717 ACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAG 42776 ||||||| |||||||| ||||| ||| |||||||||||| |||||||| ||| || Sbjct 3318877 GCCGCCGTTGAGGGCATTTTCTTTAGCGGCAGCTTCGCCTCCATTTTCTGGCTAAAGAAG 3318936 Query 42777 -AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCT 42835 || || ||||| || | |||||||| || || || ||| | || ||||| | Sbjct 3318937 CGTGGCCTC-ATGCCTGGCTTGACCTTCTCCAATGAGCTAATCTCGCGCGATGAGGGCTT 3318995 Query 42836 GCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAG-G 42894 ||| | ||||||||| | ||||| |||| | ||| | | || | | | Sbjct 3318996 GCACTGTGACTTTGCCGTGTTGATGTTC---CGCCATTTGGTGCA-ACGTCCCAGCCGTG 3319051 Query 42895 AGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGT 42954 |||| || || || || ||| || || |||| || ||||||||||||| | Sbjct 3319052 AGCGCATCATTGCAATTATTGAGGATGCTGTCAAGATTGAACAGGAGTTCCTCACAGATG 3319111 Query 42955 CGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACG 43014 | ||||| || | || | ||||||||| || || |||| ||||||| ||| || Sbjct 3319112 CTCTGCCAGTTAACTTGATTGGCATGAACTGCGCTCTGATGTCAGAGTACATTGAGTTCG 3319171 Query 43015 TCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCCT 43074 | || || | || ||| || | ||| | | |||| || || | || | Sbjct 3319172 TGGCTGATCGCCTGCTGGTGGAGCTTGGTGTGGGAAAAATCTATAATACAAAGAATCCAT 3319231 Query 43075 TCGAC-TTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAG 43127 | ||| || ||||| | || |||||||| || || || ||||| || |||||| Sbjct 3319232 T-GACATTCATGGAAATGATTTCGTTGGACGGAAAAACTAACTTCTTTGAGAAG 3319284 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944339129174560