Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20busckii_20[refseq_20GCF_5F001277935.1_202015-09-02] 6 sequences; 135,748,557 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq1 100 3e-16 >seq1 Length=33300182 Score = 100 bits (110), Expect = 3e-16 Identities = 275/415 (66%), Gaps = 6/415 (1%) Strand=Plus/Minus Query 20173 TGGCTCTATATGCGTTTTGTAGATGTGGGCATCTCCCAACGTGTGAATAAACTCCCCGGG 20232 |||||| | ||| | || |||| || ||||| || | ||| || ||||| || || | Sbjct 20735081 TGGCTCCACATGATTCTTATAGACATGAGCATCGCCAAGCGTATGGATAAAGTCGCCTG- 20735023 Query 20233 TCT--AAGACCAGTAACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTA 20290 ||| ||| || || ||||| || | |||||| || | | | |||| |||||||| Sbjct 20735022 TCTTCAAGCCC-GTTACATGGGCTATCATATAGGTAAGAAACGCATAGGATGCAATGTTG 20734964 Query 20291 AAAGGAACTCCCAAACCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCG 20350 || |||||||||| |||||||| | | ||||| ||||||||||| || ||||| Sbjct 20734963 AAGGGAACTCCCAGTCCCATGTCGGCGCTGCGTTGATAAAGCTGACAGGAGAGTTCACCA 20734904 Query 20351 TCAGCTACATAAAATTGACATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCC 20410 | || ||||| || || | |||| || ||||| || ||||| | | || Sbjct 20734903 TTGGCCACATAGAACTGCACCAGGCAGTGGCAAGGCGGCAGTGCCATTTTGGGTATATCA 20734844 Query 20411 GCCGGGTTCCACGCACACATAATGATTCTTCTATCGTGCGGATTATTTTTTATTAAATCC 20470 || ||||| || |||| ||||| | | ||| ||||| || | || Sbjct 20734843 ATGGGATTCCAGGCGGACATTATGATGCGACGATCAGTTGGATTCTTGCGCAAGGTATTA 20734784 Query 20471 ACAATGTACGACAATTGGTCAAACCCCTGGCCTGTATAGTCAGCA-TCCGCGTCCACGTA 20529 | || | | | || |||| || ||||| | || ||| || | | || | || Sbjct 20734783 ATAACCTCCTGGAGCTGATCAATGCCTTGGCCGCTGTATTCATCATTACAGGTGC-GATA 20734725 Query 20530 CGCCGCCCCAAAGTGCCTCCACTGGAAACCGTAAACAGGTCCCAAATCCCCCTCC 20584 | |||| |||||||| | |||||||||||| || || || |||||||| || ||| Sbjct 20734724 CTCCGCACCAAAGTGACGCCACTGGAAACCATACACGGGACCCAAATCACCTTCC 20734670 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441372766897040