Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20busckii_20[refseq_20GCF_5F001277935.1_202015-09-02]
6 sequences; 135,748,557 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq1 136 9e-27
seq3 123 6e-23
seq5 107 5e-18
>seq1
Length=33300182
Score = 136 bits (150), Expect = 9e-27
Identities = 169/230 (73%), Gaps = 6/230 (3%)
Strand=Plus/Minus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| ||||| | || || | || | ||| || ||||| |||||||||||||
Sbjct 5269468 CCACCACGGAGGCGGAGCACCAAGTGCAGGGTGGACTCCTTTTGAATATTATAGTCGGAC 5269409
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| || || || ||||| ||||| || || |||||||| | ||| |||||| |||||
Sbjct 5269408 AGAGTACGACCATCTTCCAATTGCTTGCCAGCGAAGATTAAACGTTGTTGA---TCTGGA 5269352
Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423
||||||||||| ||||| || || ||||| || ||||| |||| ||| | |||
Sbjct 5269351 GGAATTCCTTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTATCCGATGGTTCG 5269292
Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| || || ||||| ||||| || || || || || ||||| ||||||||
Sbjct 5269291 ACCTCAAGAGTGATGGTCTTACCCGTAAGGGTTTTAACGAAGATCTGCAT 5269242
>seq3
Length=28180402
Score = 123 bits (136), Expect = 6e-23
Identities = 169/235 (72%), Gaps = 6/235 (3%)
Strand=Plus/Plus
Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301
|||||||||| || || | || || | |||| || || || || || || ||||
Sbjct 22368560 CATGTCCACCACGCAGACGGAGAACCAAGTGAAGGGTAGACTCCTTCTGAATGTTGTAGT 22368619
Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361
||| || |||||||| || || || || || || ||||||||||||||||| || |
Sbjct 22368620 CGGACAGAGTGCGTCCATCCTCCAACTGCTTGCCGGCGAAGATCAGACGCTGCTG---GT 22368676
Query 288362 CT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCG 288418
|| ||||| || || || || ||||| || || ||||| || || || | ||||| |
Sbjct 22368677 CTGGGGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGG 22368736
Query 288419 ATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| || || | ||||| ||||| || ||||| ||||| ||||| ||||||||
Sbjct 22368737 GCTCAACCTCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 22368791
Score = 116 bits (128), Expect = 9e-21
Identities = 143/194 (74%), Gaps = 6/194 (3%)
Strand=Plus/Plus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
|| || || || || ||||||| || |||||||| || || || || || || ||||||
Sbjct 22368829 TCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCATCCTCCAACTGCTTGCCGGCGAAG 22368888
Query 288343 ATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399
||||||||||| || ||| ||||| || || || || ||||| || || |||||
Sbjct 22368889 ATCAGACGCTGCTG---GTCTGGGGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTCACA 22368945
Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459
|| || || | ||||| | || || || | ||||| ||||| || ||||| |||||
Sbjct 22368946 TTCTCAATGGTGTCGCTGGGCTCAACCTCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTC 22369005
Query 288460 ACGAATATCTGCAT 288473
||||| ||||||||
Sbjct 22369006 ACGAAGATCTGCAT 22369019
Score = 116 bits (128), Expect = 9e-21
Identities = 143/194 (74%), Gaps = 6/194 (3%)
Strand=Plus/Plus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
|| || || || || ||||||| || |||||||| || || || || || || ||||||
Sbjct 22369057 TCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCATCCTCCAACTGCTTGCCGGCGAAG 22369116
Query 288343 ATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399
||||||||||| || ||| ||||| || || || || ||||| || || |||||
Sbjct 22369117 ATCAGACGCTGCTG---GTCTGGGGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTCACA 22369173
Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459
|| || || | ||||| | || || || | ||||| ||||| || ||||| |||||
Sbjct 22369174 TTCTCAATGGTGTCGCTGGGCTCAACCTCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTC 22369233
Query 288460 ACGAATATCTGCAT 288473
||||| ||||||||
Sbjct 22369234 ACGAAGATCTGCAT 22369247
Score = 116 bits (128), Expect = 9e-21
Identities = 143/194 (74%), Gaps = 6/194 (3%)
Strand=Plus/Plus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
|| || || || || ||||||| || |||||||| || || || || || || ||||||
Sbjct 22369285 TCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCATCCTCCAACTGCTTGCCGGCGAAG 22369344
Query 288343 ATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399
||||||||||| || ||| ||||| || || || || ||||| || || |||||
Sbjct 22369345 ATCAGACGCTGCTG---GTCTGGGGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTCACA 22369401
Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459
|| || || | ||||| | || || || | ||||| ||||| || ||||| |||||
Sbjct 22369402 TTCTCAATGGTGTCGCTGGGCTCAACCTCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTC 22369461
Query 288460 ACGAATATCTGCAT 288473
||||| ||||||||
Sbjct 22369462 ACGAAGATCTGCAT 22369475
Score = 116 bits (128), Expect = 9e-21
Identities = 143/194 (74%), Gaps = 6/194 (3%)
Strand=Plus/Plus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
|| || || || || ||||||| || |||||||| || || || || || || ||||||
Sbjct 22369513 TCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCATCCTCCAACTGCTTGCCGGCGAAG 22369572
Query 288343 ATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399
||||||||||| || ||| ||||| || || || || ||||| || || |||||
Sbjct 22369573 ATCAGACGCTGCTG---GTCTGGGGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTCACA 22369629
Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459
|| || || | ||||| | || || || | ||||| ||||| || ||||| |||||
Sbjct 22369630 TTCTCAATGGTGTCGCTGGGCTCAACCTCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTC 22369689
Query 288460 ACGAATATCTGCAT 288473
||||| ||||||||
Sbjct 22369690 ACGAAGATCTGCAT 22369703
Score = 116 bits (128), Expect = 9e-21
Identities = 143/194 (74%), Gaps = 6/194 (3%)
Strand=Plus/Plus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
|| || || || || ||||||| || |||||||| || || || || || || ||||||
Sbjct 22369741 TCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCATCCTCCAACTGCTTGCCGGCGAAG 22369800
Query 288343 ATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399
||||||||||| || ||| ||||| || || || || ||||| || || |||||
Sbjct 22369801 ATCAGACGCTGCTG---GTCTGGGGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTCACA 22369857
Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459
|| || || | ||||| | || || || | ||||| ||||| || ||||| |||||
Sbjct 22369858 TTCTCAATGGTGTCGCTGGGCTCAACCTCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTC 22369917
Query 288460 ACGAATATCTGCAT 288473
||||| ||||||||
Sbjct 22369918 ACGAAGATCTGCAT 22369931
Score = 107 bits (118), Expect = 5e-18
Identities = 141/194 (73%), Gaps = 6/194 (3%)
Strand=Plus/Plus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
|| || || || || ||||||| || |||||||| || || || || || || ||||||
Sbjct 22369969 TCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCATCCTCCAACTGCTTGCCGGCGAAG 22370028
Query 288343 ATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399
||||||||||| || ||| ||||| || || || || ||||| || || |||||
Sbjct 22370029 ATCAGACGCTGCTG---GTCTGGGGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTCACA 22370085
Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459
|| || || | ||||| | || || || | ||||| ||||| || |||| |||||
Sbjct 22370086 TTCTCAATGGTGTCGCTGGGCTCAACCTCCAAGGTGATGGTCTTGCCAGTCAATGTCTTC 22370145
Query 288460 ACGAATATCTGCAT 288473
|| || ||||||||
Sbjct 22370146 ACAAAGATCTGCAT 22370159
>seq5
Length=23724088
Score = 107 bits (118), Expect = 5e-18
Identities = 141/194 (73%), Gaps = 6/194 (3%)
Strand=Plus/Minus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
|| || |||||||| ||||| | || || ||||| || || | || || || |||||
Sbjct 5414446 TCCTTCTGGATATTGTAGTCAGAAAGAGTACGTCCATCCTCCAGCTGCTTGCCAGCGAAA 5414387
Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399
|||| |||||| ||| |||||| || ||||| || ||||| || || || || |||
Sbjct 5414386 ATCAAACGCTGCTGA---TCTGGGGGAATACCTTCCTTGTCCTGAATCTTGGCCTTAACG 5414330
Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459
|| || || | ||| | || || ||||| ||||| ||||| || |||| ||||||
Sbjct 5414329 TTCTCAATGGTATCAGAGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGTCAAGGTCTTG 5414270
Query 288460 ACGAATATCTGCAT 288473
||||| || |||||
Sbjct 5414269 ACGAAGATTTGCAT 5414256
Score = 104 bits (114), Expect = 6e-17
Identities = 140/194 (72%), Gaps = 6/194 (3%)
Strand=Plus/Minus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
|| || ||||| ||||| || | || || ||||| || || | || || || |||||
Sbjct 5413990 TCCTTCTGGATGTTATAATCAGAAAGAGTACGTCCATCCTCCAGCTGCTTGCCAGCGAAA 5413931
Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399
|||| |||||| ||| |||||| || ||||| || ||||| || || || || |||
Sbjct 5413930 ATCAAACGCTGCTGA---TCTGGGGGAATACCTTCCTTGTCCTGAATCTTGGCCTTAACG 5413874
Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459
|| || || | ||| | || || ||||| ||||| ||||| || |||| ||||||
Sbjct 5413873 TTCTCAATGGTATCAGAGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGTCAAGGTCTTG 5413814
Query 288460 ACGAATATCTGCAT 288473
||||| || |||||
Sbjct 5413813 ACGAAGATTTGCAT 5413800
Score = 104 bits (114), Expect = 6e-17
Identities = 140/194 (72%), Gaps = 6/194 (3%)
Strand=Plus/Minus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
|| || ||||| ||||| || | || || ||||| || || | || || || |||||
Sbjct 5414218 TCCTTCTGGATGTTATAATCAGAAAGAGTACGTCCATCCTCCAGCTGCTTGCCAGCGAAA 5414159
Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399
|||| |||||| ||| |||||| || ||||| || ||||| || || || || |||
Sbjct 5414158 ATCAAACGCTGCTGA---TCTGGGGGAATACCTTCCTTGTCCTGAATCTTGGCCTTAACG 5414102
Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459
|| || || | ||| | || || ||||| ||||| ||||| || |||| ||||||
Sbjct 5414101 TTCTCAATGGTATCAGAGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGTCAAGGTCTTG 5414042
Query 288460 ACGAATATCTGCAT 288473
||||| || |||||
Sbjct 5414041 ACGAAGATTTGCAT 5414028
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179654309314068
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