Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20busckii_20[refseq_20GCF_5F001277935.1_202015-09-02] 6 sequences; 135,748,557 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq1 136 9e-27 seq3 123 6e-23 seq5 107 5e-18 >seq1 Length=33300182 Score = 136 bits (150), Expect = 9e-27 Identities = 169/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || | || | ||| || ||||| ||||||||||||| Sbjct 5269468 CCACCACGGAGGCGGAGCACCAAGTGCAGGGTGGACTCCTTTTGAATATTATAGTCGGAC 5269409 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || || ||||| ||||| || || |||||||| | ||| |||||| ||||| Sbjct 5269408 AGAGTACGACCATCTTCCAATTGCTTGCCAGCGAAGATTAAACGTTGTTGA---TCTGGA 5269352 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||||||||||| ||||| || || ||||| || ||||| |||| ||| | ||| Sbjct 5269351 GGAATTCCTTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTATCCGATGGTTCG 5269292 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || ||||| ||||| || || || || || ||||| |||||||| Sbjct 5269291 ACCTCAAGAGTGATGGTCTTACCCGTAAGGGTTTTAACGAAGATCTGCAT 5269242 >seq3 Length=28180402 Score = 123 bits (136), Expect = 6e-23 Identities = 169/235 (72%), Gaps = 6/235 (3%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||||||||| || || | || || | |||| || || || || || || |||| Sbjct 22368560 CATGTCCACCACGCAGACGGAGAACCAAGTGAAGGGTAGACTCCTTCTGAATGTTGTAGT 22368619 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 ||| || |||||||| || || || || || || ||||||||||||||||| || | Sbjct 22368620 CGGACAGAGTGCGTCCATCCTCCAACTGCTTGCCGGCGAAGATCAGACGCTGCTG---GT 22368676 Query 288362 CT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCG 288418 || ||||| || || || || ||||| || || ||||| || || || | ||||| | Sbjct 22368677 CTGGGGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGG 22368736 Query 288419 ATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || | ||||| ||||| || ||||| ||||| ||||| |||||||| Sbjct 22368737 GCTCAACCTCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 22368791 Score = 116 bits (128), Expect = 9e-21 Identities = 143/194 (74%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || || || || ||||||| || |||||||| || || || || || || |||||| Sbjct 22368829 TCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCATCCTCCAACTGCTTGCCGGCGAAG 22368888 Query 288343 ATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 ||||||||||| || ||| ||||| || || || || ||||| || || ||||| Sbjct 22368889 ATCAGACGCTGCTG---GTCTGGGGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTCACA 22368945 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | ||||| | || || || | ||||| ||||| || ||||| ||||| Sbjct 22368946 TTCTCAATGGTGTCGCTGGGCTCAACCTCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTC 22369005 Query 288460 ACGAATATCTGCAT 288473 ||||| |||||||| Sbjct 22369006 ACGAAGATCTGCAT 22369019 Score = 116 bits (128), Expect = 9e-21 Identities = 143/194 (74%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || || || || ||||||| || |||||||| || || || || || || |||||| Sbjct 22369057 TCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCATCCTCCAACTGCTTGCCGGCGAAG 22369116 Query 288343 ATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 ||||||||||| || ||| ||||| || || || || ||||| || || ||||| Sbjct 22369117 ATCAGACGCTGCTG---GTCTGGGGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTCACA 22369173 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | ||||| | || || || | ||||| ||||| || ||||| ||||| Sbjct 22369174 TTCTCAATGGTGTCGCTGGGCTCAACCTCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTC 22369233 Query 288460 ACGAATATCTGCAT 288473 ||||| |||||||| Sbjct 22369234 ACGAAGATCTGCAT 22369247 Score = 116 bits (128), Expect = 9e-21 Identities = 143/194 (74%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || || || || ||||||| || |||||||| || || || || || || |||||| Sbjct 22369285 TCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCATCCTCCAACTGCTTGCCGGCGAAG 22369344 Query 288343 ATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 ||||||||||| || ||| ||||| || || || || ||||| || || ||||| Sbjct 22369345 ATCAGACGCTGCTG---GTCTGGGGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTCACA 22369401 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | ||||| | || || || | ||||| ||||| || ||||| ||||| Sbjct 22369402 TTCTCAATGGTGTCGCTGGGCTCAACCTCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTC 22369461 Query 288460 ACGAATATCTGCAT 288473 ||||| |||||||| Sbjct 22369462 ACGAAGATCTGCAT 22369475 Score = 116 bits (128), Expect = 9e-21 Identities = 143/194 (74%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || || || || ||||||| || |||||||| || || || || || || |||||| Sbjct 22369513 TCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCATCCTCCAACTGCTTGCCGGCGAAG 22369572 Query 288343 ATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 ||||||||||| || ||| ||||| || || || || ||||| || || ||||| Sbjct 22369573 ATCAGACGCTGCTG---GTCTGGGGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTCACA 22369629 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | ||||| | || || || | ||||| ||||| || ||||| ||||| Sbjct 22369630 TTCTCAATGGTGTCGCTGGGCTCAACCTCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTC 22369689 Query 288460 ACGAATATCTGCAT 288473 ||||| |||||||| Sbjct 22369690 ACGAAGATCTGCAT 22369703 Score = 116 bits (128), Expect = 9e-21 Identities = 143/194 (74%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || || || || ||||||| || |||||||| || || || || || || |||||| Sbjct 22369741 TCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCATCCTCCAACTGCTTGCCGGCGAAG 22369800 Query 288343 ATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 ||||||||||| || ||| ||||| || || || || ||||| || || ||||| Sbjct 22369801 ATCAGACGCTGCTG---GTCTGGGGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTCACA 22369857 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | ||||| | || || || | ||||| ||||| || ||||| ||||| Sbjct 22369858 TTCTCAATGGTGTCGCTGGGCTCAACCTCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTC 22369917 Query 288460 ACGAATATCTGCAT 288473 ||||| |||||||| Sbjct 22369918 ACGAAGATCTGCAT 22369931 Score = 107 bits (118), Expect = 5e-18 Identities = 141/194 (73%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || || || || ||||||| || |||||||| || || || || || || |||||| Sbjct 22369969 TCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCATCCTCCAACTGCTTGCCGGCGAAG 22370028 Query 288343 ATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 ||||||||||| || ||| ||||| || || || || ||||| || || ||||| Sbjct 22370029 ATCAGACGCTGCTG---GTCTGGGGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTCACA 22370085 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | ||||| | || || || | ||||| ||||| || |||| ||||| Sbjct 22370086 TTCTCAATGGTGTCGCTGGGCTCAACCTCCAAGGTGATGGTCTTGCCAGTCAATGTCTTC 22370145 Query 288460 ACGAATATCTGCAT 288473 || || |||||||| Sbjct 22370146 ACAAAGATCTGCAT 22370159 >seq5 Length=23724088 Score = 107 bits (118), Expect = 5e-18 Identities = 141/194 (73%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || |||||||| ||||| | || || ||||| || || | || || || ||||| Sbjct 5414446 TCCTTCTGGATATTGTAGTCAGAAAGAGTACGTCCATCCTCCAGCTGCTTGCCAGCGAAA 5414387 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 |||| |||||| ||| |||||| || ||||| || ||||| || || || || ||| Sbjct 5414386 ATCAAACGCTGCTGA---TCTGGGGGAATACCTTCCTTGTCCTGAATCTTGGCCTTAACG 5414330 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | ||| | || || ||||| ||||| ||||| || |||| |||||| Sbjct 5414329 TTCTCAATGGTATCAGAGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGTCAAGGTCTTG 5414270 Query 288460 ACGAATATCTGCAT 288473 ||||| || ||||| Sbjct 5414269 ACGAAGATTTGCAT 5414256 Score = 104 bits (114), Expect = 6e-17 Identities = 140/194 (72%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| ||||| || | || || ||||| || || | || || || ||||| Sbjct 5413990 TCCTTCTGGATGTTATAATCAGAAAGAGTACGTCCATCCTCCAGCTGCTTGCCAGCGAAA 5413931 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 |||| |||||| ||| |||||| || ||||| || ||||| || || || || ||| Sbjct 5413930 ATCAAACGCTGCTGA---TCTGGGGGAATACCTTCCTTGTCCTGAATCTTGGCCTTAACG 5413874 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | ||| | || || ||||| ||||| ||||| || |||| |||||| Sbjct 5413873 TTCTCAATGGTATCAGAGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGTCAAGGTCTTG 5413814 Query 288460 ACGAATATCTGCAT 288473 ||||| || ||||| Sbjct 5413813 ACGAAGATTTGCAT 5413800 Score = 104 bits (114), Expect = 6e-17 Identities = 140/194 (72%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| ||||| || | || || ||||| || || | || || || ||||| Sbjct 5414218 TCCTTCTGGATGTTATAATCAGAAAGAGTACGTCCATCCTCCAGCTGCTTGCCAGCGAAA 5414159 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 |||| |||||| ||| |||||| || ||||| || ||||| || || || || ||| Sbjct 5414158 ATCAAACGCTGCTGA---TCTGGGGGAATACCTTCCTTGTCCTGAATCTTGGCCTTAACG 5414102 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | ||| | || || ||||| ||||| ||||| || |||| |||||| Sbjct 5414101 TTCTCAATGGTATCAGAGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGTCAAGGTCTTG 5414042 Query 288460 ACGAATATCTGCAT 288473 ||||| || ||||| Sbjct 5414041 ACGAAGATTTGCAT 5414028 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179654309314068