Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20busckii_20[refseq_20GCF_5F001277935.1_202015-09-02] 6 sequences; 135,748,557 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq1 161 2e-34 seq3 125 2e-23 seq5 111 4e-19 >seq1 Length=33300182 Score = 161 bits (178), Expect = 2e-34 Identities = 161/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||| |||||||||||||| |||| ||||||||| | || ||| | |||||| Sbjct 90673 AGCACCAAGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTACGGCCATCT 90732 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| ||||||||||| | ||||||||| || || |||||| ||| || Sbjct 90733 TCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATTCCCTCTTTGTCT 90792 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| || |||| |||||| | | || || ||||| ||||| ||| Sbjct 90793 TGGATCTTGGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACCTCCAAGGTGATGGTC 90852 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| ||||||||||| ||||| Sbjct 90853 TTGCCGGTGAGGGTTTTCACAAAGATTTG 90881 Score = 161 bits (178), Expect = 2e-34 Identities = 161/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||| |||||||||||||| |||| ||||||||| | || ||| | |||||| Sbjct 2542939 AGCACCAAGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTACGGCCATCT 2542880 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| ||||||||||| | ||||||||| || || |||||| ||| || Sbjct 2542879 TCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATTCCCTCTTTGTCT 2542820 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| || |||| |||||| | | || || ||||| ||||| ||| Sbjct 2542819 TGGATCTTGGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACCTCCAAGGTGATGGTC 2542760 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| ||||||||||| ||||| Sbjct 2542759 TTGCCGGTGAGGGTTTTCACAAAGATTTG 2542731 Score = 120 bits (132), Expect = 7e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||| || || ||||||||||| | || ||||| | || ||| | |||||| Sbjct 5269453 AGCACCAAGTGCAGGGTGGACTCCTTTTGAATATTATAGTCGGACAGAGTACGACCATCT 5269394 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| ||||| || |||||||| | ||| || || || ||| |||||||||| ||| Sbjct 5269393 TCCAATTGCTTGCCAGCGAAGATTAAACGTTGTTGATCTGGAGGAATTCCTTCTTTGTCC 5269334 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| || || ||||| || || | || ||| || || | ||||| ||| Sbjct 5269333 TGAATCTTGGCTTTGACATTTTCGATAGTATCCGATGGTTCGACCTCAAGAGTGATGGTC 5269274 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 |||||||| || ||||| || || || || Sbjct 5269273 TTACCCGTAAGGGTTTTAACGAAGATCTG 5269245 >seq3 Length=28180402 Score = 125 bits (138), Expect = 2e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | |||||| || |||||||| || | ||||||||| | || ||| | |||||| Sbjct 22368808 AGCACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCATCC 22368867 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| |||||| ||||||||||| |||||||||||||| || || || || || Sbjct 22368868 TCCAACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCT 22368927 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| |||||| || | |||||| | | || || ||||| ||||| ||| Sbjct 22368928 TGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCAACCTCCAAGGTGATGGTC 22368987 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || ||||| || || || Sbjct 22368988 TTGCCAGTCAGGGTCTTCACGAAGATCTG 22369016 Score = 125 bits (138), Expect = 2e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | |||||| || |||||||| || | ||||||||| | || ||| | |||||| Sbjct 22369036 AGCACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCATCC 22369095 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| |||||| ||||||||||| |||||||||||||| || || || || || Sbjct 22369096 TCCAACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCT 22369155 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| |||||| || | |||||| | | || || ||||| ||||| ||| Sbjct 22369156 TGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCAACCTCCAAGGTGATGGTC 22369215 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || ||||| || || || Sbjct 22369216 TTGCCAGTCAGGGTCTTCACGAAGATCTG 22369244 Score = 125 bits (138), Expect = 2e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | |||||| || |||||||| || | ||||||||| | || ||| | |||||| Sbjct 22369264 AGCACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCATCC 22369323 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| |||||| ||||||||||| |||||||||||||| || || || || || Sbjct 22369324 TCCAACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCT 22369383 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| |||||| || | |||||| | | || || ||||| ||||| ||| Sbjct 22369384 TGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCAACCTCCAAGGTGATGGTC 22369443 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || ||||| || || || Sbjct 22369444 TTGCCAGTCAGGGTCTTCACGAAGATCTG 22369472 Score = 125 bits (138), Expect = 2e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | |||||| || |||||||| || | ||||||||| | || ||| | |||||| Sbjct 22369492 AGCACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCATCC 22369551 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| |||||| ||||||||||| |||||||||||||| || || || || || Sbjct 22369552 TCCAACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCT 22369611 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| |||||| || | |||||| | | || || ||||| ||||| ||| Sbjct 22369612 TGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCAACCTCCAAGGTGATGGTC 22369671 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || ||||| || || || Sbjct 22369672 TTGCCAGTCAGGGTCTTCACGAAGATCTG 22369700 Score = 125 bits (138), Expect = 2e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | |||||| || |||||||| || | ||||||||| | || ||| | |||||| Sbjct 22369720 AGCACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCATCC 22369779 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| |||||| ||||||||||| |||||||||||||| || || || || || Sbjct 22369780 TCCAACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCT 22369839 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| |||||| || | |||||| | | || || ||||| ||||| ||| Sbjct 22369840 TGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCAACCTCCAAGGTGATGGTC 22369899 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || ||||| || || || Sbjct 22369900 TTGCCAGTCAGGGTCTTCACGAAGATCTG 22369928 Score = 125 bits (138), Expect = 2e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | |||||| || |||||||| || | ||||||||| | || ||| | |||||| Sbjct 22369948 AGCACCAAGTGGAGGGTTGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCATCC 22370007 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| |||||| ||||||||||| |||||||||||||| || || || || || Sbjct 22370008 TCCAACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCT 22370067 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| |||||| || | |||||| | | || || ||||| ||||| ||| Sbjct 22370068 TGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCAACCTCCAAGGTGATGGTC 22370127 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || | || |||||||| || || Sbjct 22370128 TTGCCAGTCAATGTCTTCACAAAGATCTG 22370156 Score = 120 bits (132), Expect = 7e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||| || || |||||||| || | ||||||||| | || ||| | |||||| Sbjct 22368580 AGAACCAAGTGAAGGGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCATCC 22368639 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| |||||| ||||||||||| |||||||||||||| || || || || || Sbjct 22368640 TCCAACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCT 22368699 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| |||||| || | |||||| | | || || ||||| ||||| ||| Sbjct 22368700 TGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCAACCTCCAAGGTGATGGTC 22368759 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || ||||| || || || Sbjct 22368760 TTGCCAGTCAGGGTCTTCACGAAGATCTG 22368788 Score = 89.7 bits (98), Expect = 1e-12 Identities = 70/84 (83%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 200935 CTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAG 200994 || ||||||||||| ||||||||||| |||||| | ||| || |||| |||||| | ||| Sbjct 22368665 CTGATCTTCGCCGGCAAGCAGTTGGAGGATGGACGCACTCTGTCCGACTACAACATTCAG 22368606 Query 200995 AAAGAGTCTACTCTTCACCTTGTT 201018 || |||||||| |||||| | ||| Sbjct 22368605 AAGGAGTCTACCCTTCACTTGGTT 22368582 >seq5 Length=23724088 Score = 111 bits (122), Expect = 4e-19 Identities = 145/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 199426 GTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTG 199485 |||||| || |||||||| |||| ||| || |||| | ||| | |||||| || ||||| Sbjct 5413775 GTGGAGGGTTGACTCCTTCTGGATGTTATAATCAGAAAGAGTACGTCCATCCTCAAGCTG 5413716 Query 199486 CTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTT 199545 ||| || || || || | |||||||||||| || ||| || || ||||||||||| Sbjct 5413715 CTTGCCAGCAAAAATCAAACGCTGCTGGTCTGGGGGAATACCCTCCTTGTCCTGAATCTT 5413656 Query 199546 TTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGT 199605 ||| || || | ||| || | | || || ||||| ||||| ||||| || || Sbjct 5413655 GGCCTTGACATTCTCAATGGTATCAGAAGGCTCAACTTCCAAGGTGATTGTCTTGCCAGT 5413596 Query 199606 GAGAGTTTTCACAAAAATTTG 199626 | |||||| || ||||| || Sbjct 5413595 TAAAGTTTTGACGAAAATCTG 5413575 Score = 109 bits (120), Expect = 1e-18 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || | ||||| || |||||||| |||| |||||||||| | ||| Sbjct 5414476 CGAAGACGCAAAACCAAATGGAGGGTTGACTCCTTCTGGATATTGTAGTCAGAAAGAGTA 5414417 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||| ||||||||||| || ||||| || | ||||||||| || || ||| ||| Sbjct 5414416 CGTCCATCCTCCAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGATCTGGGGGAATACCT 5414357 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||||||||| ||| ||| || | ||| || | | || || || | Sbjct 5414356 TCCTTGTCCTGAATCTTGGCCTTAACGTTCTCAATGGTATCAGAGGGCTCAACCTCGAGG 5414297 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || | || || || || ||||| Sbjct 5414296 GTGATGGTCTTGCCAGTCAAGGTCTTGACGAAGATTTG 5414259 Score = 105 bits (116), Expect = 2e-17 Identities = 144/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 199426 GTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTG 199485 |||||| || |||||||| |||| ||| || |||| | ||| | |||||| |||||||| Sbjct 5414003 GTGGAGGGTTGACTCCTTCTGGATGTTATAATCAGAAAGAGTACGTCCATCCTCCAGCTG 5413944 Query 199486 CTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTT 199545 ||| || ||||| || | ||||||||| || || ||| ||||| ||||||||||| Sbjct 5413943 CTTGCCAGCGAAAATCAAACGCTGCTGATCTGGGGGAATACCTTCCTTGTCCTGAATCTT 5413884 Query 199546 TTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGT 199605 ||| ||| || | ||| || | | || || || | ||||| ||||| || || Sbjct 5413883 GGCCTTAACGTTCTCAATGGTATCAGAGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGT 5413824 Query 199606 GAGAGTTTTCACAAAAATTTG 199626 | || || || || ||||| Sbjct 5413823 CAAGGTCTTGACGAAGATTTG 5413803 Score = 105 bits (116), Expect = 2e-17 Identities = 144/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 199426 GTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTG 199485 |||||| || |||||||| |||| ||| || |||| | ||| | |||||| |||||||| Sbjct 5414231 GTGGAGGGTTGACTCCTTCTGGATGTTATAATCAGAAAGAGTACGTCCATCCTCCAGCTG 5414172 Query 199486 CTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTT 199545 ||| || ||||| || | ||||||||| || || ||| ||||| ||||||||||| Sbjct 5414171 CTTGCCAGCGAAAATCAAACGCTGCTGATCTGGGGGAATACCTTCCTTGTCCTGAATCTT 5414112 Query 199546 TTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGT 199605 ||| ||| || | ||| || | | || || || | ||||| ||||| || || Sbjct 5414111 GGCCTTAACGTTCTCAATGGTATCAGAGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGT 5414052 Query 199606 GAGAGTTTTCACAAAAATTTG 199626 | || || || || ||||| Sbjct 5414051 CAAGGTCTTGACGAAGATTTG 5414031 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178921509370402