Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20busckii_20[refseq_20GCF_5F001277935.1_202015-09-02]
6 sequences; 135,748,557 total letters
Query= NC_013756.1
Length=368454
Score E
Sequences producing significant alignments: (Bits) Value
seq1 161 2e-34
seq3 125 2e-23
seq5 111 4e-19
>seq1
Length=33300182
Score = 161 bits (178), Expect = 2e-34
Identities = 161/209 (77%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
|| || | ||| |||||||||||||| |||| ||||||||| | || ||| | ||||||
Sbjct 90673 AGCACCAAGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTACGGCCATCT 90732
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
||||||||||| ||||||||||| | ||||||||| || || |||||| ||| ||
Sbjct 90733 TCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATTCCCTCTTTGTCT 90792
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|| ||||| ||| || |||| |||||| | | || || ||||| ||||| |||
Sbjct 90793 TGGATCTTGGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACCTCCAAGGTGATGGTC 90852
Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| || ||||| ||||||||||| |||||
Sbjct 90853 TTGCCGGTGAGGGTTTTCACAAAGATTTG 90881
Score = 161 bits (178), Expect = 2e-34
Identities = 161/209 (77%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
|| || | ||| |||||||||||||| |||| ||||||||| | || ||| | ||||||
Sbjct 2542939 AGCACCAAGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTACGGCCATCT 2542880
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
||||||||||| ||||||||||| | ||||||||| || || |||||| ||| ||
Sbjct 2542879 TCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATTCCCTCTTTGTCT 2542820
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|| ||||| ||| || |||| |||||| | | || || ||||| ||||| |||
Sbjct 2542819 TGGATCTTGGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACCTCCAAGGTGATGGTC 2542760
Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| || ||||| ||||||||||| |||||
Sbjct 2542759 TTGCCGGTGAGGGTTTTCACAAAGATTTG 2542731
Score = 120 bits (132), Expect = 7e-22
Identities = 152/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
|| || | ||| || || ||||||||||| | || ||||| | || ||| | ||||||
Sbjct 5269453 AGCACCAAGTGCAGGGTGGACTCCTTTTGAATATTATAGTCGGACAGAGTACGACCATCT 5269394
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
|||| ||||| || |||||||| | ||| || || || ||| |||||||||| |||
Sbjct 5269393 TCCAATTGCTTGCCAGCGAAGATTAAACGTTGTTGATCTGGAGGAATTCCTTCTTTGTCC 5269334
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|||||||| || || ||||| || || | || ||| || || | ||||| |||
Sbjct 5269333 TGAATCTTGGCTTTGACATTTTCGATAGTATCCGATGGTTCGACCTCAAGAGTGATGGTC 5269274
Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|||||||| || ||||| || || || ||
Sbjct 5269273 TTACCCGTAAGGGTTTTAACGAAGATCTG 5269245
>seq3
Length=28180402
Score = 125 bits (138), Expect = 2e-23
Identities = 153/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
|| || | |||||| || |||||||| || | ||||||||| | || ||| | ||||||
Sbjct 22368808 AGCACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCATCC 22368867
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
|||| |||||| ||||||||||| |||||||||||||| || || || || ||
Sbjct 22368868 TCCAACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCT 22368927
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|| ||||| |||||| || | |||||| | | || || ||||| ||||| |||
Sbjct 22368928 TGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCAACCTCCAAGGTGATGGTC 22368987
Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| || || || || ||||| || || ||
Sbjct 22368988 TTGCCAGTCAGGGTCTTCACGAAGATCTG 22369016
Score = 125 bits (138), Expect = 2e-23
Identities = 153/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
|| || | |||||| || |||||||| || | ||||||||| | || ||| | ||||||
Sbjct 22369036 AGCACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCATCC 22369095
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
|||| |||||| ||||||||||| |||||||||||||| || || || || ||
Sbjct 22369096 TCCAACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCT 22369155
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|| ||||| |||||| || | |||||| | | || || ||||| ||||| |||
Sbjct 22369156 TGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCAACCTCCAAGGTGATGGTC 22369215
Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| || || || || ||||| || || ||
Sbjct 22369216 TTGCCAGTCAGGGTCTTCACGAAGATCTG 22369244
Score = 125 bits (138), Expect = 2e-23
Identities = 153/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
|| || | |||||| || |||||||| || | ||||||||| | || ||| | ||||||
Sbjct 22369264 AGCACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCATCC 22369323
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
|||| |||||| ||||||||||| |||||||||||||| || || || || ||
Sbjct 22369324 TCCAACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCT 22369383
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|| ||||| |||||| || | |||||| | | || || ||||| ||||| |||
Sbjct 22369384 TGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCAACCTCCAAGGTGATGGTC 22369443
Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| || || || || ||||| || || ||
Sbjct 22369444 TTGCCAGTCAGGGTCTTCACGAAGATCTG 22369472
Score = 125 bits (138), Expect = 2e-23
Identities = 153/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
|| || | |||||| || |||||||| || | ||||||||| | || ||| | ||||||
Sbjct 22369492 AGCACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCATCC 22369551
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
|||| |||||| ||||||||||| |||||||||||||| || || || || ||
Sbjct 22369552 TCCAACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCT 22369611
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|| ||||| |||||| || | |||||| | | || || ||||| ||||| |||
Sbjct 22369612 TGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCAACCTCCAAGGTGATGGTC 22369671
Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| || || || || ||||| || || ||
Sbjct 22369672 TTGCCAGTCAGGGTCTTCACGAAGATCTG 22369700
Score = 125 bits (138), Expect = 2e-23
Identities = 153/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
|| || | |||||| || |||||||| || | ||||||||| | || ||| | ||||||
Sbjct 22369720 AGCACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCATCC 22369779
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
|||| |||||| ||||||||||| |||||||||||||| || || || || ||
Sbjct 22369780 TCCAACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCT 22369839
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|| ||||| |||||| || | |||||| | | || || ||||| ||||| |||
Sbjct 22369840 TGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCAACCTCCAAGGTGATGGTC 22369899
Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| || || || || ||||| || || ||
Sbjct 22369900 TTGCCAGTCAGGGTCTTCACGAAGATCTG 22369928
Score = 125 bits (138), Expect = 2e-23
Identities = 153/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
|| || | |||||| || |||||||| || | ||||||||| | || ||| | ||||||
Sbjct 22369948 AGCACCAAGTGGAGGGTTGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCATCC 22370007
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
|||| |||||| ||||||||||| |||||||||||||| || || || || ||
Sbjct 22370008 TCCAACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCT 22370067
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|| ||||| |||||| || | |||||| | | || || ||||| ||||| |||
Sbjct 22370068 TGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCAACCTCCAAGGTGATGGTC 22370127
Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| || || | || |||||||| || ||
Sbjct 22370128 TTGCCAGTCAATGTCTTCACAAAGATCTG 22370156
Score = 120 bits (132), Expect = 7e-22
Identities = 152/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
|| || | ||| || || |||||||| || | ||||||||| | || ||| | ||||||
Sbjct 22368580 AGAACCAAGTGAAGGGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCATCC 22368639
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
|||| |||||| ||||||||||| |||||||||||||| || || || || ||
Sbjct 22368640 TCCAACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCT 22368699
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|| ||||| |||||| || | |||||| | | || || ||||| ||||| |||
Sbjct 22368700 TGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCAACCTCCAAGGTGATGGTC 22368759
Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| || || || || ||||| || || ||
Sbjct 22368760 TTGCCAGTCAGGGTCTTCACGAAGATCTG 22368788
Score = 89.7 bits (98), Expect = 1e-12
Identities = 70/84 (83%), Gaps = 0/84 (0%)
Strand=Plus/Minus
Query 200935 CTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAG 200994
|| ||||||||||| ||||||||||| |||||| | ||| || |||| |||||| | |||
Sbjct 22368665 CTGATCTTCGCCGGCAAGCAGTTGGAGGATGGACGCACTCTGTCCGACTACAACATTCAG 22368606
Query 200995 AAAGAGTCTACTCTTCACCTTGTT 201018
|| |||||||| |||||| | |||
Sbjct 22368605 AAGGAGTCTACCCTTCACTTGGTT 22368582
>seq5
Length=23724088
Score = 111 bits (122), Expect = 4e-19
Identities = 145/201 (72%), Gaps = 0/201 (0%)
Strand=Plus/Minus
Query 199426 GTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTG 199485
|||||| || |||||||| |||| ||| || |||| | ||| | |||||| || |||||
Sbjct 5413775 GTGGAGGGTTGACTCCTTCTGGATGTTATAATCAGAAAGAGTACGTCCATCCTCAAGCTG 5413716
Query 199486 CTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTT 199545
||| || || || || | |||||||||||| || ||| || || |||||||||||
Sbjct 5413715 CTTGCCAGCAAAAATCAAACGCTGCTGGTCTGGGGGAATACCCTCCTTGTCCTGAATCTT 5413656
Query 199546 TTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGT 199605
||| || || | ||| || | | || || ||||| ||||| ||||| || ||
Sbjct 5413655 GGCCTTGACATTCTCAATGGTATCAGAAGGCTCAACTTCCAAGGTGATTGTCTTGCCAGT 5413596
Query 199606 GAGAGTTTTCACAAAAATTTG 199626
| |||||| || ||||| ||
Sbjct 5413595 TAAAGTTTTGACGAAAATCTG 5413575
Score = 109 bits (120), Expect = 1e-18
Identities = 155/218 (71%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
||||| | || || | ||||| || |||||||| |||| |||||||||| | |||
Sbjct 5414476 CGAAGACGCAAAACCAAATGGAGGGTTGACTCCTTCTGGATATTGTAGTCAGAAAGAGTA 5414417
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| |||||| ||||||||||| || ||||| || | ||||||||| || || ||| |||
Sbjct 5414416 CGTCCATCCTCCAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGATCTGGGGGAATACCT 5414357
Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588
|| ||||||||||| ||| ||| || | ||| || | | || || || |
Sbjct 5414356 TCCTTGTCCTGAATCTTGGCCTTAACGTTCTCAATGGTATCAGAGGGCTCAACCTCGAGG 5414297
Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||||| ||||| || || | || || || || |||||
Sbjct 5414296 GTGATGGTCTTGCCAGTCAAGGTCTTGACGAAGATTTG 5414259
Score = 105 bits (116), Expect = 2e-17
Identities = 144/201 (72%), Gaps = 0/201 (0%)
Strand=Plus/Minus
Query 199426 GTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTG 199485
|||||| || |||||||| |||| ||| || |||| | ||| | |||||| ||||||||
Sbjct 5414003 GTGGAGGGTTGACTCCTTCTGGATGTTATAATCAGAAAGAGTACGTCCATCCTCCAGCTG 5413944
Query 199486 CTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTT 199545
||| || ||||| || | ||||||||| || || ||| ||||| |||||||||||
Sbjct 5413943 CTTGCCAGCGAAAATCAAACGCTGCTGATCTGGGGGAATACCTTCCTTGTCCTGAATCTT 5413884
Query 199546 TTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGT 199605
||| ||| || | ||| || | | || || || | ||||| ||||| || ||
Sbjct 5413883 GGCCTTAACGTTCTCAATGGTATCAGAGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGT 5413824
Query 199606 GAGAGTTTTCACAAAAATTTG 199626
| || || || || |||||
Sbjct 5413823 CAAGGTCTTGACGAAGATTTG 5413803
Score = 105 bits (116), Expect = 2e-17
Identities = 144/201 (72%), Gaps = 0/201 (0%)
Strand=Plus/Minus
Query 199426 GTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTG 199485
|||||| || |||||||| |||| ||| || |||| | ||| | |||||| ||||||||
Sbjct 5414231 GTGGAGGGTTGACTCCTTCTGGATGTTATAATCAGAAAGAGTACGTCCATCCTCCAGCTG 5414172
Query 199486 CTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTT 199545
||| || ||||| || | ||||||||| || || ||| ||||| |||||||||||
Sbjct 5414171 CTTGCCAGCGAAAATCAAACGCTGCTGATCTGGGGGAATACCTTCCTTGTCCTGAATCTT 5414112
Query 199546 TTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGT 199605
||| ||| || | ||| || | | || || || | ||||| ||||| || ||
Sbjct 5414111 GGCCTTAACGTTCTCAATGGTATCAGAGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGT 5414052
Query 199606 GAGAGTTTTCACAAAAATTTG 199626
| || || || || |||||
Sbjct 5414051 CAAGGTCTTGACGAAGATTTG 5414031
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1178921509370402
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