Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20busckii_20[refseq_20GCF_5F001277935.1_202015-09-02] 6 sequences; 135,748,557 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq2 347 1e-90 seq1 154 1e-32 seq3 125 7e-24 >seq2 Length=22510139 Score = 347 bits (384), Expect = 1e-90 Identities = 575/826 (70%), Gaps = 8/826 (1%) Strand=Plus/Minus Query 132606 TTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGT 132665 |||||| |||||||| || |||||||| || ||||||||||| ||||| ||||| | Sbjct 3319302 TTGATACTCGCCCACTTTCTTCTCAAAGAAGTTAGTTTTTCCGTCCAACGAAATCATTTC 3319243 Query 132666 CATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGGTGCCGATC--AGGTCGACGAGC 132723 ||| || ||| || || ||| || ||| || | || | || || || ||| Sbjct 3319242 CATGAATGTCAATGGATTCTTTGTATTATAGATTTT--TCCCACACCAAGCTCCACCAGC 3319185 Query 132724 AGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCAGA 132783 || | || ||||||||||| ||||| | ||||| |||| || | || | || Sbjct 3319184 AGGCGATCAGCCACGAACTCAATGTACTCTGACATCAGAGCGCAGTTCATGCCAATCAAG 3319125 Query 132784 CGCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATT 132843 || ||||| || || ||||| || || || || ||| || || | ||| Sbjct 3319124 TTAACTGGCAGAGCATCTGTGAGGAACTCCTGTTCAATCTTGACAGCATCCTCAATAATT 3319065 Query 132844 TCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAG 132903 | | | |||| | ||| || |||||||||||||| ||||||||| |||||| Sbjct 3319064 GCAATGATGCGCTCACGGCTGGGACGTTGCACCAAATGGCGGAACATCAACACGGCAAAG 3319005 Query 132904 TCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATG 132963 || || ||||||||||| || | || || || || ||| ||| |||||||| |||||| Sbjct 3319004 TCACAGTGCAAGCCCTCATCGCGCGAGATTAGCTCATTGGAGAAGGTCAAGCCAGGCATG 3318945 Query 132964 AGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCG 133023 ||||| || || || ||||| || |||| |||||| ||||| |||||| | |||||| Sbjct 3318944 AGGCCACGCTTCTTTAGCCAGAAAATGGAGGCGAAGCTGCCGCTAAAGAAAATGCCCTCA 3318885 Query 133024 ACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGC 133083 ||||| ||||| || | | |||||||| || |||| | ||| || ||||| Sbjct 3318884 ACGGCGGCGAAGGCAATAATCCGCTCGCCAAAGTTGGCAGCCTTGGAGGATATCCATGAT 3318825 Query 133084 AGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAACGG 133143 | ||||| || ||||| || || |||||| ||||| || || || |||| | Sbjct 3318824 AATGCCCAGTCAGCCTTGCGCTTCACAGCCGGCATTGTTTCAATTGCATTGAACAGA--T 3318767 Query 133144 AGTTTCTCTTCCGAGGA--ACGCACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGT 133201 ||| | || | ||| ||| || || || || ||||| |||||| ||||||| Sbjct 3318766 AGTCACGCTGTTGGGGATCACGGACATACGTATCAATGAGCACACTATACATCTCCGAGT 3318707 Query 133202 GTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTT 133261 | || |||||||| || || || || || |||||||| || ||||| | |||||||| Sbjct 3318706 GGACATTCTCCATCGCAATCTGGAATCCATAAAAGCAGCGTGCCTCTGTTATCTGCACTT 3318647 Query 133262 CTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGG 133321 ||||| || ||||| ||||| || || ||||| ||||| || ||| |||||||| | Sbjct 3318646 CTTGACTAAAGCGCTCAACCAGGTTCTCATTGACAATGCCATCAGAGGCTGCGAAAAATG 3318587 Query 133322 CCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCGCGCGTGT 133381 ||| ||| || || || || ||||| ||||| | | || |||||||| | ||| Sbjct 3318586 CCAACACATGTGAAATAAAGTGACGCTCATTGTCTGTAAGACGTTCCCAGTCAGTCATGT 3318527 Query 133382 CCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGC 133427 |||| ||||| ||||| || || || |||||||| || || ||||| Sbjct 3318526 CCTTAGACAGATCCACTTCTTCCACAGTCCAAAATGAGGCTTCGGC 3318481 >seq1 Length=33300182 Score = 154 bits (170), Expect = 1e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 38241 aaaaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || |||||||| || || ||||| ||||| ||||| ||||||||| | || |||||| || Sbjct 90887 AAGATGCAAATCTTTGTGAAAACCCTCACCGGCAAGACCATCACCTTGGAGGTCGAGCCC 90828 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | |||| | | | | | || | || |||| |||||||||||||||||| | || Sbjct 90827 TCTGACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAAGAGGGAATTCCCCCAGAT 90768 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||||| | || | ||| ||||| |||||||| || | || || || ||||||| Sbjct 90767 CAGCAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAAGATGGCCGTACTCTGTCCGACTAC 90708 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||| ||||| |||| ||||| |||||||| ||| || | || || Sbjct 90707 AACATCCAGAAGGAGTCGACTCTGCACTTGGTGCTCCGTCTGCGTGGTGG 90658 Score = 154 bits (170), Expect = 1e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 38241 aaaaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || |||||||| || || ||||| ||||| ||||| ||||||||| | || |||||| || Sbjct 2542725 AAGATGCAAATCTTTGTGAAAACCCTCACCGGCAAGACCATCACCTTGGAGGTCGAGCCC 2542784 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | |||| | | | | | || | || |||| |||||||||||||||||| | || Sbjct 2542785 TCTGACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAAGAGGGAATTCCCCCAGAT 2542844 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||||| | || | ||| ||||| |||||||| || | || || || ||||||| Sbjct 2542845 CAGCAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAAGATGGCCGTACTCTGTCCGACTAC 2542904 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||| ||||| |||| ||||| |||||||| ||| || | || || Sbjct 2542905 AACATCCAGAAGGAGTCGACTCTGCACTTGGTGCTCCGTCTGCGTGGTGG 2542954 >seq3 Length=28180402 Score = 125 bits (138), Expect = 7e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||| ||||||||| | || || ||| ||| | Sbjct 22369019 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCTTGGAGGTTGAGCCCAGC 22368960 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || |||| ||||| ||||| || ||| | ||||| Sbjct 22368959 GACACCATTGAGAATGTGAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAG 22368900 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | ||| ||||| ||| |||| || | ||||| || |||||||||| Sbjct 22368899 CAGCGTCTGATCTTCGCCGGCAAGCAGTTGGAGGATGGACGCACTCTGTCCGACTACAAC 22368840 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 || || ||||| | || || || |||||||| ||| || | || || Sbjct 22368839 ATTCAGAAGGAGTCTACCCTCCACTTGGTGCTCCGTCTGCGTGGTGG 22368793 Score = 125 bits (138), Expect = 7e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||| ||||||||| | || || ||| ||| | Sbjct 22369247 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCTTGGAGGTTGAGCCCAGC 22369188 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || |||| ||||| ||||| || ||| | ||||| Sbjct 22369187 GACACCATTGAGAATGTGAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAG 22369128 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | ||| ||||| ||| |||| || | ||||| || |||||||||| Sbjct 22369127 CAGCGTCTGATCTTCGCCGGCAAGCAGTTGGAGGATGGACGCACTCTGTCCGACTACAAC 22369068 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 || || ||||| | || || || |||||||| ||| || | || || Sbjct 22369067 ATTCAGAAGGAGTCTACCCTCCACTTGGTGCTCCGTCTGCGTGGTGG 22369021 Score = 125 bits (138), Expect = 7e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||| ||||||||| | || || ||| ||| | Sbjct 22369475 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCTTGGAGGTTGAGCCCAGC 22369416 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || |||| ||||| ||||| || ||| | ||||| Sbjct 22369415 GACACCATTGAGAATGTGAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAG 22369356 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | ||| ||||| ||| |||| || | ||||| || |||||||||| Sbjct 22369355 CAGCGTCTGATCTTCGCCGGCAAGCAGTTGGAGGATGGACGCACTCTGTCCGACTACAAC 22369296 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 || || ||||| | || || || |||||||| ||| || | || || Sbjct 22369295 ATTCAGAAGGAGTCTACCCTCCACTTGGTGCTCCGTCTGCGTGGTGG 22369249 Score = 125 bits (138), Expect = 7e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||| ||||||||| | || || ||| ||| | Sbjct 22369703 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCTTGGAGGTTGAGCCCAGC 22369644 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || |||| ||||| ||||| || ||| | ||||| Sbjct 22369643 GACACCATTGAGAATGTGAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAG 22369584 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | ||| ||||| ||| |||| || | ||||| || |||||||||| Sbjct 22369583 CAGCGTCTGATCTTCGCCGGCAAGCAGTTGGAGGATGGACGCACTCTGTCCGACTACAAC 22369524 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 || || ||||| | || || || |||||||| ||| || | || || Sbjct 22369523 ATTCAGAAGGAGTCTACCCTCCACTTGGTGCTCCGTCTGCGTGGTGG 22369477 Score = 125 bits (138), Expect = 7e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||| ||||||||| | || || ||| ||| | Sbjct 22369931 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCTTGGAGGTTGAGCCCAGC 22369872 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || |||| ||||| ||||| || ||| | ||||| Sbjct 22369871 GACACCATTGAGAATGTGAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAG 22369812 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | ||| ||||| ||| |||| || | ||||| || |||||||||| Sbjct 22369811 CAGCGTCTGATCTTCGCCGGCAAGCAGTTGGAGGATGGACGCACTCTGTCCGACTACAAC 22369752 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 || || ||||| | || || || |||||||| ||| || | || || Sbjct 22369751 ATTCAGAAGGAGTCTACCCTCCACTTGGTGCTCCGTCTGCGTGGTGG 22369705 Score = 122 bits (134), Expect = 9e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||| ||||||||| | || || ||| ||| | Sbjct 22368791 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCTTGGAGGTTGAGCCCAGC 22368732 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || |||| ||||| ||||| || ||| | ||||| Sbjct 22368731 GACACCATTGAGAATGTGAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAG 22368672 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | ||| ||||| ||| |||| || | ||||| || |||||||||| Sbjct 22368671 CAGCGTCTGATCTTCGCCGGCAAGCAGTTGGAGGATGGACGCACTCTGTCCGACTACAAC 22368612 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 || || ||||| | || || || ||||| || ||| || | || || Sbjct 22368611 ATTCAGAAGGAGTCTACCCTTCACTTGGTTCTCCGTCTGCGTGGTGG 22368565 Score = 122 bits (134), Expect = 9e-23 Identities = 169/236 (72%), Gaps = 2/236 (1%) Strand=Plus/Minus Query 38237 Taaaaaa--aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTC 38294 ||||||| ||||| || || || || || | || ||||| ||||||||| | || || Sbjct 22370168 TAAAAAACCATGCAGATCTTTGTGAAGACATTGACTGGCAAGACCATCACCTTGGAGGTT 22370109 Query 38295 GAGGCCACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCC 38354 ||| ||| ||||| | | | | | || | || |||| ||||| ||||| || ||| Sbjct 22370108 GAGCCCAGCGACACCATTGAGAATGTGAAGGCCAAGATCCAAGACAAGGAGGGCATCCCC 22370049 Query 38355 GCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAAC 38414 | ||||| ||||| || || | ||| ||||| ||| |||| || | ||||| || | Sbjct 22370048 CCAGACCAGCAGCGTCTGATCTTCGCCGGCAAGCAGTTGGAGGATGGACGCACTCTGTCC 22369989 Query 38415 GACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||||||| || ||||| | || || || |||||||| ||| || | || || Sbjct 22369988 GACTACAACATTCAGAAGGAGTCAACCCTCCACTTGGTGCTCCGTCTGCGTGGTGG 22369933 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500172762487040