Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20busckii_20[refseq_20GCF_5F001277935.1_202015-09-02]
6 sequences; 135,748,557 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq2 347 1e-90
seq1 154 1e-32
seq3 125 7e-24
>seq2
Length=22510139
Score = 347 bits (384), Expect = 1e-90
Identities = 575/826 (70%), Gaps = 8/826 (1%)
Strand=Plus/Minus
Query 132606 TTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGT 132665
|||||| |||||||| || |||||||| || ||||||||||| ||||| ||||| |
Sbjct 3319302 TTGATACTCGCCCACTTTCTTCTCAAAGAAGTTAGTTTTTCCGTCCAACGAAATCATTTC 3319243
Query 132666 CATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGGTGCCGATC--AGGTCGACGAGC 132723
||| || ||| || || ||| || ||| || | || | || || || |||
Sbjct 3319242 CATGAATGTCAATGGATTCTTTGTATTATAGATTTT--TCCCACACCAAGCTCCACCAGC 3319185
Query 132724 AGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCAGA 132783
|| | || ||||||||||| ||||| | ||||| |||| || | || | ||
Sbjct 3319184 AGGCGATCAGCCACGAACTCAATGTACTCTGACATCAGAGCGCAGTTCATGCCAATCAAG 3319125
Query 132784 CGCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATT 132843
|| ||||| || || ||||| || || || || ||| || || | |||
Sbjct 3319124 TTAACTGGCAGAGCATCTGTGAGGAACTCCTGTTCAATCTTGACAGCATCCTCAATAATT 3319065
Query 132844 TCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAG 132903
| | | |||| | ||| || |||||||||||||| ||||||||| ||||||
Sbjct 3319064 GCAATGATGCGCTCACGGCTGGGACGTTGCACCAAATGGCGGAACATCAACACGGCAAAG 3319005
Query 132904 TCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATG 132963
|| || ||||||||||| || | || || || || ||| ||| |||||||| ||||||
Sbjct 3319004 TCACAGTGCAAGCCCTCATCGCGCGAGATTAGCTCATTGGAGAAGGTCAAGCCAGGCATG 3318945
Query 132964 AGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCG 133023
||||| || || || ||||| || |||| |||||| ||||| |||||| | ||||||
Sbjct 3318944 AGGCCACGCTTCTTTAGCCAGAAAATGGAGGCGAAGCTGCCGCTAAAGAAAATGCCCTCA 3318885
Query 133024 ACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGC 133083
||||| ||||| || | | |||||||| || |||| | ||| || |||||
Sbjct 3318884 ACGGCGGCGAAGGCAATAATCCGCTCGCCAAAGTTGGCAGCCTTGGAGGATATCCATGAT 3318825
Query 133084 AGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAACGG 133143
| ||||| || ||||| || || |||||| ||||| || || || |||| |
Sbjct 3318824 AATGCCCAGTCAGCCTTGCGCTTCACAGCCGGCATTGTTTCAATTGCATTGAACAGA--T 3318767
Query 133144 AGTTTCTCTTCCGAGGA--ACGCACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGT 133201
||| | || | ||| ||| || || || || ||||| |||||| |||||||
Sbjct 3318766 AGTCACGCTGTTGGGGATCACGGACATACGTATCAATGAGCACACTATACATCTCCGAGT 3318707
Query 133202 GTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTT 133261
| || |||||||| || || || || || |||||||| || ||||| | ||||||||
Sbjct 3318706 GGACATTCTCCATCGCAATCTGGAATCCATAAAAGCAGCGTGCCTCTGTTATCTGCACTT 3318647
Query 133262 CTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGG 133321
||||| || ||||| ||||| || || ||||| ||||| || ||| |||||||| |
Sbjct 3318646 CTTGACTAAAGCGCTCAACCAGGTTCTCATTGACAATGCCATCAGAGGCTGCGAAAAATG 3318587
Query 133322 CCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCGCGCGTGT 133381
||| ||| || || || || ||||| ||||| | | || |||||||| | |||
Sbjct 3318586 CCAACACATGTGAAATAAAGTGACGCTCATTGTCTGTAAGACGTTCCCAGTCAGTCATGT 3318527
Query 133382 CCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGC 133427
|||| ||||| ||||| || || || |||||||| || || |||||
Sbjct 3318526 CCTTAGACAGATCCACTTCTTCCACAGTCCAAAATGAGGCTTCGGC 3318481
>seq1
Length=33300182
Score = 154 bits (170), Expect = 1e-32
Identities = 172/230 (75%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 38241 aaaaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300
|| |||||||| || || ||||| ||||| ||||| ||||||||| | || |||||| ||
Sbjct 90887 AAGATGCAAATCTTTGTGAAAACCCTCACCGGCAAGACCATCACCTTGGAGGTCGAGCCC 90828
Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360
| |||| | | | | | || | || |||| |||||||||||||||||| | ||
Sbjct 90827 TCTGACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAAGAGGGAATTCCCCCAGAT 90768
Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420
|| ||||| | || | ||| ||||| |||||||| || | || || || |||||||
Sbjct 90767 CAGCAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAAGATGGCCGTACTCTGTCCGACTAC 90708
Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
|||||||| ||||| |||| ||||| |||||||| ||| || | || ||
Sbjct 90707 AACATCCAGAAGGAGTCGACTCTGCACTTGGTGCTCCGTCTGCGTGGTGG 90658
Score = 154 bits (170), Expect = 1e-32
Identities = 172/230 (75%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 38241 aaaaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300
|| |||||||| || || ||||| ||||| ||||| ||||||||| | || |||||| ||
Sbjct 2542725 AAGATGCAAATCTTTGTGAAAACCCTCACCGGCAAGACCATCACCTTGGAGGTCGAGCCC 2542784
Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360
| |||| | | | | | || | || |||| |||||||||||||||||| | ||
Sbjct 2542785 TCTGACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAAGAGGGAATTCCCCCAGAT 2542844
Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420
|| ||||| | || | ||| ||||| |||||||| || | || || || |||||||
Sbjct 2542845 CAGCAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAAGATGGCCGTACTCTGTCCGACTAC 2542904
Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
|||||||| ||||| |||| ||||| |||||||| ||| || | || ||
Sbjct 2542905 AACATCCAGAAGGAGTCGACTCTGCACTTGGTGCTCCGTCTGCGTGGTGG 2542954
>seq3
Length=28180402
Score = 125 bits (138), Expect = 7e-24
Identities = 164/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || || || ||||| ||||||||| | || || ||| ||| |
Sbjct 22369019 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCTTGGAGGTTGAGCCCAGC 22368960
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|||| | | | | | || | || |||| ||||| ||||| || ||| | |||||
Sbjct 22368959 GACACCATTGAGAATGTGAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAG 22368900
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||||| || || | ||| ||||| ||| |||| || | ||||| || ||||||||||
Sbjct 22368899 CAGCGTCTGATCTTCGCCGGCAAGCAGTTGGAGGATGGACGCACTCTGTCCGACTACAAC 22368840
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
|| || ||||| | || || || |||||||| ||| || | || ||
Sbjct 22368839 ATTCAGAAGGAGTCTACCCTCCACTTGGTGCTCCGTCTGCGTGGTGG 22368793
Score = 125 bits (138), Expect = 7e-24
Identities = 164/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || || || ||||| ||||||||| | || || ||| ||| |
Sbjct 22369247 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCTTGGAGGTTGAGCCCAGC 22369188
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|||| | | | | | || | || |||| ||||| ||||| || ||| | |||||
Sbjct 22369187 GACACCATTGAGAATGTGAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAG 22369128
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||||| || || | ||| ||||| ||| |||| || | ||||| || ||||||||||
Sbjct 22369127 CAGCGTCTGATCTTCGCCGGCAAGCAGTTGGAGGATGGACGCACTCTGTCCGACTACAAC 22369068
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
|| || ||||| | || || || |||||||| ||| || | || ||
Sbjct 22369067 ATTCAGAAGGAGTCTACCCTCCACTTGGTGCTCCGTCTGCGTGGTGG 22369021
Score = 125 bits (138), Expect = 7e-24
Identities = 164/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || || || ||||| ||||||||| | || || ||| ||| |
Sbjct 22369475 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCTTGGAGGTTGAGCCCAGC 22369416
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|||| | | | | | || | || |||| ||||| ||||| || ||| | |||||
Sbjct 22369415 GACACCATTGAGAATGTGAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAG 22369356
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||||| || || | ||| ||||| ||| |||| || | ||||| || ||||||||||
Sbjct 22369355 CAGCGTCTGATCTTCGCCGGCAAGCAGTTGGAGGATGGACGCACTCTGTCCGACTACAAC 22369296
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
|| || ||||| | || || || |||||||| ||| || | || ||
Sbjct 22369295 ATTCAGAAGGAGTCTACCCTCCACTTGGTGCTCCGTCTGCGTGGTGG 22369249
Score = 125 bits (138), Expect = 7e-24
Identities = 164/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || || || ||||| ||||||||| | || || ||| ||| |
Sbjct 22369703 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCTTGGAGGTTGAGCCCAGC 22369644
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|||| | | | | | || | || |||| ||||| ||||| || ||| | |||||
Sbjct 22369643 GACACCATTGAGAATGTGAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAG 22369584
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||||| || || | ||| ||||| ||| |||| || | ||||| || ||||||||||
Sbjct 22369583 CAGCGTCTGATCTTCGCCGGCAAGCAGTTGGAGGATGGACGCACTCTGTCCGACTACAAC 22369524
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
|| || ||||| | || || || |||||||| ||| || | || ||
Sbjct 22369523 ATTCAGAAGGAGTCTACCCTCCACTTGGTGCTCCGTCTGCGTGGTGG 22369477
Score = 125 bits (138), Expect = 7e-24
Identities = 164/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || || || ||||| ||||||||| | || || ||| ||| |
Sbjct 22369931 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCTTGGAGGTTGAGCCCAGC 22369872
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|||| | | | | | || | || |||| ||||| ||||| || ||| | |||||
Sbjct 22369871 GACACCATTGAGAATGTGAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAG 22369812
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||||| || || | ||| ||||| ||| |||| || | ||||| || ||||||||||
Sbjct 22369811 CAGCGTCTGATCTTCGCCGGCAAGCAGTTGGAGGATGGACGCACTCTGTCCGACTACAAC 22369752
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
|| || ||||| | || || || |||||||| ||| || | || ||
Sbjct 22369751 ATTCAGAAGGAGTCTACCCTCCACTTGGTGCTCCGTCTGCGTGGTGG 22369705
Score = 122 bits (134), Expect = 9e-23
Identities = 163/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || || || ||||| ||||||||| | || || ||| ||| |
Sbjct 22368791 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCTTGGAGGTTGAGCCCAGC 22368732
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|||| | | | | | || | || |||| ||||| ||||| || ||| | |||||
Sbjct 22368731 GACACCATTGAGAATGTGAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAG 22368672
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||||| || || | ||| ||||| ||| |||| || | ||||| || ||||||||||
Sbjct 22368671 CAGCGTCTGATCTTCGCCGGCAAGCAGTTGGAGGATGGACGCACTCTGTCCGACTACAAC 22368612
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
|| || ||||| | || || || ||||| || ||| || | || ||
Sbjct 22368611 ATTCAGAAGGAGTCTACCCTTCACTTGGTTCTCCGTCTGCGTGGTGG 22368565
Score = 122 bits (134), Expect = 9e-23
Identities = 169/236 (72%), Gaps = 2/236 (1%)
Strand=Plus/Minus
Query 38237 Taaaaaa--aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTC 38294
||||||| ||||| || || || || || | || ||||| ||||||||| | || ||
Sbjct 22370168 TAAAAAACCATGCAGATCTTTGTGAAGACATTGACTGGCAAGACCATCACCTTGGAGGTT 22370109
Query 38295 GAGGCCACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCC 38354
||| ||| ||||| | | | | | || | || |||| ||||| ||||| || |||
Sbjct 22370108 GAGCCCAGCGACACCATTGAGAATGTGAAGGCCAAGATCCAAGACAAGGAGGGCATCCCC 22370049
Query 38355 GCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAAC 38414
| ||||| ||||| || || | ||| ||||| ||| |||| || | ||||| || |
Sbjct 22370048 CCAGACCAGCAGCGTCTGATCTTCGCCGGCAAGCAGTTGGAGGATGGACGCACTCTGTCC 22369989
Query 38415 GACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
||||||||||| || ||||| | || || || |||||||| ||| || | || ||
Sbjct 22369988 GACTACAACATTCAGAAGGAGTCAACCCTCCACTTGGTGCTCCGTCTGCGTGGTGG 22369933
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500172762487040
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