Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20busckii_20[refseq_20GCF_5F001277935.1_202015-09-02] 6 sequences; 135,748,557 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq1 152 2e-31 seq4 113 2e-19 >seq1 Length=33300182 Score = 152 bits (168), Expect = 2e-31 Identities = 159/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||||||||| || || ||||| || || |||||||| || ||| |||| Sbjct 5269242 ATGCAGATCTTCGTTAAAACCCTTACGGGTAAGACCATCACTCTTGAGGTCGAACCATCG 5269301 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| || ||| | | ||| || ||||| || || |||||||||||||| |||||| Sbjct 5269302 GATACTATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCTCCAGATCAA 5269361 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 ||||||||||| ||| | || || ||| | |||||||| | ||| || | || |||||| Sbjct 5269362 CAACGTTTAATCTTCGCTGGCAAGCAATTGGAAGATGGTCGTACTCTGTCCGACTATAAT 5269421 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258 ||| | ||||| | || || ||||| || Sbjct 5269422 ATTCAAAAGGAGTCCACCCTGCACTTGGT 5269450 >seq4 Length=26871514 Score = 113 bits (124), Expect = 2e-19 Identities = 250/372 (67%), Gaps = 6/372 (2%) Strand=Plus/Plus Query 451238 TTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAA 451297 ||||| || || || ||| || ||||| | || |||||| || || || || Sbjct 21271461 TTTGCACCCGAGGAGATTAGCTCCATGGTGTTGACCAAAATGCGTGAGACTGCCGAGGTG 21271520 Query 451298 TATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCA 451357 ||| | ||| | || | ||||| || ||||| || || || ||||||||||| | Sbjct 21271521 TATCTGGGTGCCAAGGTGAAGGATGCGGTGATTACGGTGCCAGCCTATTTCAATGACTCG 21271580 Query 451358 CAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATT 451417 ||||| || || || |||||||| || ||||| || || ||||| || || ||||| Sbjct 21271581 CAACGTCAGGCCACCAAAGATGCGGGCTCCATTGCGGGCTTGAATGTGCTGCGCATTATC 21271640 Query 451418 AATGAACCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaa 451477 ||||| || ||||| ||||| | || ||||| || ||| || || | || || Sbjct 21271641 AATGAGCCAACAGCGGCTGCCTTGGCCTATGGCCT-GGACAA--GAATCTCAAAGGCGAG 21271697 Query 451478 aaaaaTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATT 451537 ||| | || |||||||||| || || || || |||| || |||| | ||| Sbjct 21271698 CGTAATGTGTTGATATTTGATTTGGGCGGCGGCACCTTTGATGTCTCCATACTCACCATT 21271757 Query 451538 GAAGATGG---GGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAA 451594 || || || | | ||||| || ||||| || |||||||| ||| | || || || Sbjct 21271758 GATGAGGGCTCGCTGTTTGAGGTGAAGGCCACGGCGGGTGATACGCATTTGGGTGGCGAG 21271817 Query 451595 GATATTGATAAT 451606 ||| | |||||| Sbjct 21271818 GATTTCGATAAT 21271829 Score = 111 bits (122), Expect = 6e-19 Identities = 357/550 (65%), Gaps = 12/550 (2%) Strand=Plus/Plus Query 450911 GTAGCAATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGA 450970 ||||| ||||| ||||| | || ||||| | |||||||| ||||| || ||| | || Sbjct 17075536 GTAGCGATTGGTATTGACTTGGGCACCACATACTCATGTGTGGGTGTCTATCAACACGGC 17075595 Query 450971 AATGTAGAAATTATAGCAAATGACCAAGGATCACGAACTACTCCTTCATGGGTAAGT--- 451027 || || || || || || || ||||| || || || || || || | || || Sbjct 17075596 AAGGTGGAGATCATTGCCAACGACCAGGGCAATCGCACAACACC--CA--GCTATGTGGC 17075651 Query 451028 -TTTACGGATTCAGAAAGACTTTTAGGGCAAGCTGCTAA--ATCAATGGTAAATTCAAAT 451084 ||||| ||||| || | | | || | ||||| || | || | ||| ||| Sbjct 17075652 GTTTACAGATTCGGAGCGTTTGATTGGAGACGCTGCCAAGAACCAGGTGGCAATG--AAT 17075709 Query 451085 GCCAAAAACACAGTATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGATACT 451144 ||| ||||||||||| |||||| || || | |||||||| | |||||| ||| || Sbjct 17075710 CCCAGAAACACAGTATTTGATGCAAAGCGCCTGATTGGCCGCAAGTATGACGATCCTAAG 17075769 Query 451145 GTACAAAAAGAGAAAAAATTCTTTTCTTATGATGTAGTAAATCAAAAAGGAAAGCCCTAT 451204 | | || | || || | | | || || | | || ||| ||||| | Sbjct 17075770 ATTGCGGAGGACATCAAGCACTGGCCCTTCAAAGTGGTTAGTGAAGGAGGCAAGCCTAAG 17075829 Query 451205 ATTCAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATG 451264 ||| | | | || || ||| || ||||| |||||||| | || ||| Sbjct 17075830 ATTGGCATCGAATTCAAGGGAGAACAGAAGCGCTTTGCACCTGAAGAGGTCAGCTCGATG 17075889 Query 451265 GTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCA 451324 || || || ||||| || || || ||| ||| | ||| | || || ||| Sbjct 17075890 GTGCTGGTGAAGATGAAGGAGACGGCTGAAGCGTATCTGGGTCAAAGCATCACAGACGCA 17075949 Query 451325 GTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGA 451384 || || || || ||||| ||||||||||| | ||| |||| |||||||| || || || Sbjct 17075950 GTCATCACAGTGCCCGCCTATTTCAATGACTCTCAAAGGCAGGCAACTAAGGAAGCCGGT 17076009 Query 451385 CATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCA 451444 || ||||| || | || ||||| |||| || || || ||||| || || || || || Sbjct 17076010 CACATTGCCGGGCTTAACGTTCTGAGAATCATCAACGAGCCTACTGCGGCGGCACTGGCT 17076069 Query 451445 TATGGACTAG 451454 |||||||||| Sbjct 17076070 TATGGACTAG 17076079 Score = 107 bits (118), Expect = 8e-18 Identities = 356/549 (65%), Gaps = 10/549 (2%) Strand=Plus/Minus Query 450911 GTAGCAATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGA 450970 ||||||||||| ||||| | || ||||| | |||||||| ||||| || || | || Sbjct 2690080 GTAGCAATTGGTATTGACTTGGGCACCACATACTCATGTGTGGGTGTCTATCAGCACGGC 2690021 Query 450971 AATGTAGAAATTATAGCAAATGACCAAGGATCACGAACTACTCCTTCATGGGTAAGT--- 451027 || || || || || || || || || || || || || || || | || || Sbjct 2690020 AAGGTGGAGATCATTGCCAACGATCAGGGCAATCGCACAACACC--CA--GCTATGTGGC 2689965 Query 451028 -TTTACGGATTCAGAAAGACTTTTAGGGCAAGCTGCTAA-ATCAATGGTAAATTCAAATG 451085 ||||| ||||| || | | | || | ||||| || | | | ||| ||| Sbjct 2689964 GTTTACAGATTCGGAGCGTTTGATTGGAGACGCTGCCAAGAACCA-GGTGGCGATGAATC 2689906 Query 451086 CCAAAAACACAGTATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGATACTG 451145 ||| ||||||||||| |||||| || || | |||||||| | |||||| ||| || Sbjct 2689905 CCAGAAACACAGTATTTGATGCGAAGCGCCTGATTGGCCGCAAGTATGACGATCCTAAGA 2689846 Query 451146 TACAAAAAGAGAAAAAATTCTTTTCTTATGATGTAGTAAATCAAAAAGGAAAGCCCTATA 451205 | | || | || || | | | || || | | || ||| ||||| | | Sbjct 2689845 TTGCGGAGGACATCAAGCACTGGCCCTTCAAAGTGGTTAGTGAAGGAGGCAAGCCTAAGA 2689786 Query 451206 TTCAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGG 451265 || | | | || || ||| || ||||| |||||||| | || |||| Sbjct 2689785 TTGGCATCGAATTCAAGGGAGAACAGAAGCGCTTTGCACCTGAAGAGGTCAGCTCGATGG 2689726 Query 451266 TTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAG 451325 | || || ||||| || || || ||| ||| | ||| | || || |||| Sbjct 2689725 TGCTGGTGAAGATGAAGGAGACGGCTGAAGCGTATCTGGGTCAAAGCATCACAGACGCAG 2689666 Query 451326 TAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGAC 451385 | || || || ||||| ||||||||||| | ||| |||| |||||||| ||||| || | Sbjct 2689665 TCATCACAGTGCCCGCCTATTTCAATGACTCTCAAAGGCAGGCAACTAAGGATGCCGGTC 2689606 Query 451386 ATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCAT 451445 | ||||| || | || ||||| |||| || || || ||||| || || || || || | Sbjct 2689605 ACATTGCCGGGCTCAACGTTCTGAGAATCATCAACGAGCCTACTGCGGCGGCACTGGCTT 2689546 Query 451446 ATGGACTAG 451454 ||||||||| Sbjct 2689545 ATGGACTAG 2689537 Score = 107 bits (118), Expect = 8e-18 Identities = 356/549 (65%), Gaps = 10/549 (2%) Strand=Plus/Plus Query 450911 GTAGCAATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGA 450970 ||||||||||| ||||| | || ||||| | |||||||| ||||| || || | || Sbjct 2692384 GTAGCAATTGGTATTGACTTGGGCACCACATACTCATGTGTGGGTGTCTATCAGCACGGC 2692443 Query 450971 AATGTAGAAATTATAGCAAATGACCAAGGATCACGAACTACTCCTTCATGGGTAAGT--- 451027 || || || || || || || || || || || || || || || | || || Sbjct 2692444 AAGGTGGAGATCATTGCCAACGATCAGGGCAATCGCACAACACC--CA--GCTATGTGGC 2692499 Query 451028 -TTTACGGATTCAGAAAGACTTTTAGGGCAAGCTGCTAA-ATCAATGGTAAATTCAAATG 451085 ||||| ||||| || | | | || | ||||| || | | | ||| ||| Sbjct 2692500 GTTTACAGATTCGGAGCGTTTGATTGGAGACGCTGCCAAGAACCA-GGTGGCGATGAATC 2692558 Query 451086 CCAAAAACACAGTATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGATACTG 451145 ||| ||||||||||| |||||| || || | |||||||| | |||||| ||| || Sbjct 2692559 CCAGAAACACAGTATTTGATGCGAAGCGCCTGATTGGCCGCAAGTATGACGATCCTAAGA 2692618 Query 451146 TACAAAAAGAGAAAAAATTCTTTTCTTATGATGTAGTAAATCAAAAAGGAAAGCCCTATA 451205 | | || | || || | | | || || | | || ||| ||||| | | Sbjct 2692619 TTGCGGAGGACATCAAGCACTGGCCCTTCAAAGTGGTTAGTGAAGGAGGCAAGCCTAAGA 2692678 Query 451206 TTCAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGG 451265 || | | | || || ||| || ||||| |||||||| | || |||| Sbjct 2692679 TTGGCATCGAATTCAAGGGAGAACAGAAGCGCTTTGCACCTGAAGAGGTCAGCTCGATGG 2692738 Query 451266 TTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAG 451325 | || || ||||| || || || ||| ||| | ||| | || || |||| Sbjct 2692739 TGCTGGTGAAGATGAAGGAGACGGCTGAAGCGTATCTGGGTCAAAGCATCACAGACGCAG 2692798 Query 451326 TAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGAC 451385 | || || || ||||| ||||||||||| | ||| |||| |||||||| ||||| || | Sbjct 2692799 TCATCACAGTGCCCGCCTATTTCAATGACTCTCAAAGGCAGGCAACTAAGGATGCCGGTC 2692858 Query 451386 ATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCAT 451445 | ||||| || | || ||||| |||| || || || ||||| || || || || || | Sbjct 2692859 ACATTGCCGGGCTCAACGTTCTGAGAATCATCAACGAGCCTACTGCGGCGGCACTGGCTT 2692918 Query 451446 ATGGACTAG 451454 ||||||||| Sbjct 2692919 ATGGACTAG 2692927 Score = 95.1 bits (104), Expect = 5e-14 Identities = 177/260 (68%), Gaps = 0/260 (0%) Strand=Plus/Minus Query 451193 GGAAAGCCCTATATTCAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAA 451252 || |||||| | ||| | || | || || | ||| | || ||||| || || || Sbjct 23615186 GGCAAGCCCAAGATTGAGGTTACGTACAAGGATGAGAAGAAGACTTTCTTCCCCGAGGAG 23615127 Query 451253 ATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCA 451312 || || || ||||| | || || ||||| || || || || || |||| | Sbjct 23615126 ATCTCCTCCATGGTGTTGACCAAGATGAAGGAGACCGCCGAGGCGTACCTTGGCAAGACG 23615067 Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372 || || |||| || || ||||| |||||||||||||| || | || || || || || Sbjct 23615066 GTGACAAATGCCGTCATCACTGTGCCCGCTTATTTCAACGACTCGCAGCGTCAGGCGACC 23615007 Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCA 451432 |||||||| || ||||| ||||| ||||| || || ||||| || || || || || Sbjct 23615006 AAAGATGCTGGTACCATTGCCGGTTTGAATGTGCTGCGTATTATCAACGAGCCCACGGCC 23614947 Query 451433 GCTGCTCTAGCATATGGACT 451452 || ||| | || ||||| || Sbjct 23614946 GCGGCTATTGCCTATGGTCT 23614927 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975718248116648