Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20busckii_20[refseq_20GCF_5F001277935.1_202015-09-02] 6 sequences; 135,748,557 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq1 118 1e-21 >seq1 Length=33300182 Score = 118 bits (130), Expect = 1e-21 Identities = 290/430 (67%), Gaps = 10/430 (2%) Strand=Plus/Minus Query 175841 CCCGTACCGATACCCTCTGTACCGTTCACGAGAACCATGGGGAGTGTTGGCATGTAG-AA 175899 || ||||||||||| || | |||||||| || |||||||| | | | || || || || Sbjct 19594087 CCAGTACCGATACCTTCGGCGCCGTTCACTAGTACCATGGGTATTATGGGTATATACCAA 19594028 Query 175900 GTCTGGCTCAATGGGGCGACCATCGTCATCCAAATAGTTGAGAATTGGATCATCTCTCGG 175959 || || |||||| | | ||||| || | ||| || | ||||||||| || Sbjct 19594027 GTG-GGTTCAATGCGCTGGCCATCATCTACTTGATACGACAGCAATGGATCATCCAATGG 19593969 Query 175960 ATCAAAGATCTTTCGGGCATCTTTTGTGAGCT--TTGTAAAGATATACCTCGTTTGAGAC 176017 || | | || || | || | |||| | | || || ||||| | | || | Sbjct 19593968 ATGATAAATAAGACGCG--TCAATGGTGACATCATAGTGAATATATAACGAGCGCTAG-C 19593912 Query 176018 GC-ATCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGAT 176076 || |||||| ||||| | ||||| ||||| |||||||||| ||||| || | ||| || Sbjct 19593911 GCTATCCTTGCCACCTGTTAGACGTGTACCGAACTGACCACGGGGCTCTAGTAAATTAAT 19593852 Query 176077 ATTGTTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGTG-TCCGCGAGAGAGACTT 176135 |||||| || |||| ||| | ||||| |||||||| || || || | || || | Sbjct 19593851 ATTGTTCGAGCCCACAAAGTTCTGTGCCAAATTGACAATAGTCATCTGCAAT-GACACCT 19593793 Query 176136 CACCGTGGTGGTACGCACTCTTCTCTGCGACAAATGCCGCCAACTGCGCCACTTTCATCT 176195 | ||||| || || ||| || |||||| ||| | | | | || |||||||| | || Sbjct 19593792 CGCCGTGATGATAGGCAGACTGCTCTGCCACAGAGCCAGAGAGTTGTGCCACTTTAACCT 19593733 Query 176196 CATCCTTGAGATTCTTGTGGAAACATGCGTACATAACCTTGCGTTGCGAAGGCTTGAGAC 176255 || ||| || | ||| || | ||||||||||||| || |||||| || | Sbjct 19593732 CACGTTTGTCGTTACGCTTGAAGCAAGTAAACATAACCTTGCGCTGTCCAGGCTTAAGGC 19593673 Query 176256 CATCCGCCAT 176265 ||||| |||| Sbjct 19593672 CATCCACCAT 19593663 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620742353444320