Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20busckii_20[refseq_20GCF_5F001277935.1_202015-09-02] 6 sequences; 135,748,557 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq3 118 7e-22 seq5 102 5e-17 seq1 95.1 8e-15 >seq3 Length=28180402 Score = 118 bits (130), Expect = 7e-22 Identities = 155/213 (73%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||||||||||| || || ||||||||||| ||||| || || | ||| |||| || Sbjct 22368582 AACCAAGTGAAGGGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCATCCTC 22368641 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 || ||| || ||||| || || || || ||||||||| | || | ||||||||||| Sbjct 22368642 CAACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTG 22368701 Query 34892 AATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTT 34949 ||||| || || || || || | || | || |||||| || | ||| ||||| Sbjct 22368702 GATCTTGGCCTTCAC--ATTCTCAATGGTGTCGCTGGGCTCAACCTCCAAGGTGATGGTC 22368759 Query 34950 TTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || || || |||||||| |||||||||||| Sbjct 22368760 TTGCCAGTCAGGGTCTTCACGAAGATCTGCATA 22368792 Score = 111 bits (122), Expect = 1e-19 Identities = 153/212 (72%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | || || ||||||||||| ||||| || || | ||| |||| ||| Sbjct 22368811 ACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCATCCTCC 22368870 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 | ||| || ||||| || || || || ||||||||| | || | ||||||||||| Sbjct 22368871 AACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGG 22368930 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 ||||| || || || || || | || | || |||||| || | ||| ||||| | Sbjct 22368931 ATCTTGGCCTTCAC--ATTCTCAATGGTGTCGCTGGGCTCAACCTCCAAGGTGATGGTCT 22368988 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 | || || || |||||||| |||||||||||| Sbjct 22368989 TGCCAGTCAGGGTCTTCACGAAGATCTGCATA 22369020 Score = 111 bits (122), Expect = 1e-19 Identities = 153/212 (72%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | || || ||||||||||| ||||| || || | ||| |||| ||| Sbjct 22369039 ACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCATCCTCC 22369098 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 | ||| || ||||| || || || || ||||||||| | || | ||||||||||| Sbjct 22369099 AACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGG 22369158 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 ||||| || || || || || | || | || |||||| || | ||| ||||| | Sbjct 22369159 ATCTTGGCCTTCAC--ATTCTCAATGGTGTCGCTGGGCTCAACCTCCAAGGTGATGGTCT 22369216 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 | || || || |||||||| |||||||||||| Sbjct 22369217 TGCCAGTCAGGGTCTTCACGAAGATCTGCATA 22369248 Score = 111 bits (122), Expect = 1e-19 Identities = 153/212 (72%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | || || ||||||||||| ||||| || || | ||| |||| ||| Sbjct 22369267 ACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCATCCTCC 22369326 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 | ||| || ||||| || || || || ||||||||| | || | ||||||||||| Sbjct 22369327 AACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGG 22369386 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 ||||| || || || || || | || | || |||||| || | ||| ||||| | Sbjct 22369387 ATCTTGGCCTTCAC--ATTCTCAATGGTGTCGCTGGGCTCAACCTCCAAGGTGATGGTCT 22369444 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 | || || || |||||||| |||||||||||| Sbjct 22369445 TGCCAGTCAGGGTCTTCACGAAGATCTGCATA 22369476 Score = 111 bits (122), Expect = 1e-19 Identities = 153/212 (72%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | || || ||||||||||| ||||| || || | ||| |||| ||| Sbjct 22369495 ACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCATCCTCC 22369554 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 | ||| || ||||| || || || || ||||||||| | || | ||||||||||| Sbjct 22369555 AACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGG 22369614 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 ||||| || || || || || | || | || |||||| || | ||| ||||| | Sbjct 22369615 ATCTTGGCCTTCAC--ATTCTCAATGGTGTCGCTGGGCTCAACCTCCAAGGTGATGGTCT 22369672 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 | || || || |||||||| |||||||||||| Sbjct 22369673 TGCCAGTCAGGGTCTTCACGAAGATCTGCATA 22369704 Score = 111 bits (122), Expect = 1e-19 Identities = 153/212 (72%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | || || ||||||||||| ||||| || || | ||| |||| ||| Sbjct 22369723 ACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCATCCTCC 22369782 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 | ||| || ||||| || || || || ||||||||| | || | ||||||||||| Sbjct 22369783 AACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGG 22369842 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 ||||| || || || || || | || | || |||||| || | ||| ||||| | Sbjct 22369843 ATCTTGGCCTTCAC--ATTCTCAATGGTGTCGCTGGGCTCAACCTCCAAGGTGATGGTCT 22369900 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 | || || || |||||||| |||||||||||| Sbjct 22369901 TGCCAGTCAGGGTCTTCACGAAGATCTGCATA 22369932 Score = 109 bits (120), Expect = 4e-19 Identities = 152/211 (72%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | || || ||||||||||| ||||| || || | ||| |||| ||| Sbjct 22369951 ACCAAGTGGAGGGTTGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCATCCTCC 22370010 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 | ||| || ||||| || || || || ||||||||| | || | ||||||||||| Sbjct 22370011 AACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGG 22370070 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 ||||| || || || || || | || | || |||||| || | ||| ||||| | Sbjct 22370071 ATCTTGGCCTTCAC--ATTCTCAATGGTGTCGCTGGGCTCAACCTCCAAGGTGATGGTCT 22370128 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || || | |||||||||||||||||||| Sbjct 22370129 TGCCAGTCAATGTCTTCACAAAGATCTGCAT 22370159 >seq5 Length=23724088 Score = 102 bits (112), Expect = 5e-17 Identities = 158/224 (71%), Gaps = 4/224 (2%) Strand=Plus/Minus Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828 ||| |||||||| | || || ||||| |||||||| || ||||| | ||| |||| Sbjct 5413784 CAACACCAAGTGGAGGGTTGACTCCTTCTGGATGTTATAATCAGAAAGAGTACGTCCATC 5413725 Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888 || ||||| || || ||||| || | || ||||||||| | || | ||||||||||| Sbjct 5413724 CTCAAGCTGCTTGCCAGCAAAAATCAAACGCTGCTGGTCTGGGGGAATACCCTCCTTGTC 5413665 Query 34889 GCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATG 34946 |||||| ||||| || || || | ||| | |||||| || | ||| || Sbjct 5413664 CTGAATCTTGGCCTTGAC--ATTCTCAATGGTATCAGAAGGCTCAACTTCCAAGGTGATT 5413607 Query 34947 GTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATTCGTAGA 34990 || || || || | ||| || || || |||||||| ||||| || Sbjct 5413606 GTCTTGCCAGTTAAAGTTTTGACGAAAATCTGCATCTTCGTTGA 5413563 >seq1 Length=33300182 Score = 95.1 bits (104), Expect = 8e-15 Identities = 153/218 (70%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | || || ||||| ||||| ||||| || || | || |||| ||| Sbjct 90676 ACCAAGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTACGGCCATCTTCC 90735 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || ||||| || || | || ||||| ||| | || | ||||| ||||| Sbjct 90736 AGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATTCCCTCTTTGTCTTGG 90795 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 ||||| ||||| || || || | ||| || ||| || || | ||| ||||| | Sbjct 90796 ATCTTGGCCTTGAC--ATTCTCGATGGTGTCAGAGGGCTCGACCTCCAAGGTGATGGTCT 90853 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCATATTCGTA 34988 | || ||||| || ||||||||||| ||||| || ||| Sbjct 90854 TGCCGGTGAGGGTTTTCACAAAGATTTGCATCTTGGTA 90891 Score = 95.1 bits (104), Expect = 8e-15 Identities = 153/218 (70%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | || || ||||| ||||| ||||| || || | || |||| ||| Sbjct 2542936 ACCAAGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTACGGCCATCTTCC 2542877 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || ||||| || || | || ||||| ||| | || | ||||| ||||| Sbjct 2542876 AGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATTCCCTCTTTGTCTTGG 2542817 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 ||||| ||||| || || || | ||| || ||| || || | ||| ||||| | Sbjct 2542816 ATCTTGGCCTTGAC--ATTCTCGATGGTGTCAGAGGGCTCGACCTCCAAGGTGATGGTCT 2542759 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCATATTCGTA 34988 | || ||||| || ||||||||||| ||||| || ||| Sbjct 2542758 TGCCGGTGAGGGTTTTCACAAAGATTTGCATCTTGGTA 2542721 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324633576261168