Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20busckii_20[refseq_20GCF_5F001277935.1_202015-09-02]
6 sequences; 135,748,557 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq2 246 3e-60
>seq2
Length=22510139
Score = 246 bits (272), Expect = 3e-60
Identities = 561/836 (67%), Gaps = 6/836 (1%)
Strand=Plus/Minus
Query 18661 ACTCCCATTTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAAT 18720
|| ||||| |||||| ||| | ||| | || |||||||| ||||||||||| || ||
Sbjct 3319313 ACACCCATGCGTTGATACTCGCCCACTTTCTTCTCAAAGAAGTTAGTTTTTCCGTCCAAC 3319254
Query 18721 GATATACATTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAAT 18780
|| || |||||| || |||||||| ||| |||||| |||||| | || |
Sbjct 3319253 GAAATCATTTCCATGAATGTCAATGGATTCTTTGTATTATAGATTTTTCCCACACCAAGC 3319194
Query 18781 TCTAATAGTAGTCTATCCGCTACAAATTTAATATA-TGTGTTCATCATATCACAATTCAT 18839
|| | || || | ||| || || || | ||| || | || ||||| | | || |||||
Sbjct 3319193 TCCACCAGCAGGCGATCAGCCACGAACTCAATGTACTCTGA-CATCAGAGCGCAGTTCAT 3319135
Query 18840 TCCTATTAATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTC 18899
|| || || ||||| || || |||||||| || || || ||||| || || || || ||
Sbjct 3319134 GCCAATCAAGTTAACTGGCAGAGCATCTGTGAGGAACTCCTGTTCAATCTTGACAGCATC 3319075
Query 18900 TGATATAATAGATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAA 18959
||||| | | | | || | ||| | | | | ||| ||||||||
Sbjct 3319074 CTCAATAATTGCAATGATGCGCTCACGGCTGGGACGTTGCACCAAATGGCGGAACATCAA 3319015
Query 18960 ACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAA 19019
||||| ||||| || | ||||| || | || | ||||| || || || ||
Sbjct 3319014 CACGGCAAAGTCACAGTGCAAGCCCTCATCGCGCGAGATTAGCTCATTGGAGAAGGTCAA 3318955
Query 19020 ACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAA 19079
|||||||| || || | || |||| |||||| || || || || || ||||||
Sbjct 3318954 GCCAGGCATGAGGCCACGCTTCTTTAGCCAGAAAATGGAGGCGAAGCTGCCGCTAAAGAA 3318895
Query 19080 TATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATG 19139
|| || || || || || || |||| | | || ||| | | ||| | || | |
Sbjct 3318894 AATGCCCTCAACGGCGGCGAAGGCAATAATCCGCTCGCCAAAGTTGGCAGCCTTGG-AGG 3318836
Query 19140 A-ATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAAT 19198
| |||||| | |||||| |||||||| || ||| |||||||| || || | ||
Sbjct 3318835 ATATCCATGATAATGCCCAGTCAGCCTTGCGCTTCACAGCCGGCATTGTTTCAATTGCAT 3318776
Query 19199 TAAATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACA 19258
| || ||||| ||||| | | ||| ||||| | ||| || | | ||| ||||
Sbjct 3318775 TGAACAGATAGTCACGCTGTTGGGGATCACGGACATACGTATCAATGAGCACACTATACA 3318716
Query 19259 TTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTA 19318
| || || || | ||| || || || ||||| ||||| ||||| || | ||| |||||||
Sbjct 3318715 TCTCCGAGTGGACATTCTCCATCGCAATCTGGAATCCATAAAAGCAGCGTGCCTCTGTTA 3318656
Query 19319 TCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTG 19378
|||| ||||| || ||| | || |||| || ||||| || || |||||| ||||
Sbjct 3318655 TCTGCACTTCTTGACTAAAGCGCTCAACCAGGTTCTCATTGACAATGCCATCAGAGGCTG 3318596
Query 19379 CAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTA-ATGTATTCCAA 19437
| |||||||| || |||||| |||||| || |||| || | | || | |||
Sbjct 3318595 CGAAAAATGCCAACACATGTGAAATAAAGTGACGCTCATTGTCTGTAAGACGT-TCCCAG 3318537
Query 19438 TCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGC 19493
||| | || || ||||| | ||| |||||||| || |||||||| || || || ||
Sbjct 3318536 TCAGTCATGTCCTTAGACAGATCCACTTCTTCCACAGTCCAAAATGAGGCTTCGGC 3318481
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 562108757841840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |