Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20busckii_20[refseq_20GCF_5F001277935.1_202015-09-02] 6 sequences; 135,748,557 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq2 246 3e-60 >seq2 Length=22510139 Score = 246 bits (272), Expect = 3e-60 Identities = 561/836 (67%), Gaps = 6/836 (1%) Strand=Plus/Minus Query 18661 ACTCCCATTTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAAT 18720 || ||||| |||||| ||| | ||| | || |||||||| ||||||||||| || || Sbjct 3319313 ACACCCATGCGTTGATACTCGCCCACTTTCTTCTCAAAGAAGTTAGTTTTTCCGTCCAAC 3319254 Query 18721 GATATACATTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAAT 18780 || || |||||| || |||||||| ||| |||||| |||||| | || | Sbjct 3319253 GAAATCATTTCCATGAATGTCAATGGATTCTTTGTATTATAGATTTTTCCCACACCAAGC 3319194 Query 18781 TCTAATAGTAGTCTATCCGCTACAAATTTAATATA-TGTGTTCATCATATCACAATTCAT 18839 || | || || | ||| || || || | ||| || | || ||||| | | || ||||| Sbjct 3319193 TCCACCAGCAGGCGATCAGCCACGAACTCAATGTACTCTGA-CATCAGAGCGCAGTTCAT 3319135 Query 18840 TCCTATTAATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTC 18899 || || || ||||| || || |||||||| || || || ||||| || || || || || Sbjct 3319134 GCCAATCAAGTTAACTGGCAGAGCATCTGTGAGGAACTCCTGTTCAATCTTGACAGCATC 3319075 Query 18900 TGATATAATAGATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAA 18959 ||||| | | | | || | ||| | | | | ||| |||||||| Sbjct 3319074 CTCAATAATTGCAATGATGCGCTCACGGCTGGGACGTTGCACCAAATGGCGGAACATCAA 3319015 Query 18960 ACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAA 19019 ||||| ||||| || | ||||| || | || | ||||| || || || || Sbjct 3319014 CACGGCAAAGTCACAGTGCAAGCCCTCATCGCGCGAGATTAGCTCATTGGAGAAGGTCAA 3318955 Query 19020 ACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAA 19079 |||||||| || || | || |||| |||||| || || || || || |||||| Sbjct 3318954 GCCAGGCATGAGGCCACGCTTCTTTAGCCAGAAAATGGAGGCGAAGCTGCCGCTAAAGAA 3318895 Query 19080 TATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATG 19139 || || || || || || || |||| | | || ||| | | ||| | || | | Sbjct 3318894 AATGCCCTCAACGGCGGCGAAGGCAATAATCCGCTCGCCAAAGTTGGCAGCCTTGG-AGG 3318836 Query 19140 A-ATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAAT 19198 | |||||| | |||||| |||||||| || ||| |||||||| || || | || Sbjct 3318835 ATATCCATGATAATGCCCAGTCAGCCTTGCGCTTCACAGCCGGCATTGTTTCAATTGCAT 3318776 Query 19199 TAAATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACA 19258 | || ||||| ||||| | | ||| ||||| | ||| || | | ||| |||| Sbjct 3318775 TGAACAGATAGTCACGCTGTTGGGGATCACGGACATACGTATCAATGAGCACACTATACA 3318716 Query 19259 TTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTA 19318 | || || || | ||| || || || ||||| ||||| ||||| || | ||| ||||||| Sbjct 3318715 TCTCCGAGTGGACATTCTCCATCGCAATCTGGAATCCATAAAAGCAGCGTGCCTCTGTTA 3318656 Query 19319 TCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTG 19378 |||| ||||| || ||| | || |||| || ||||| || || |||||| |||| Sbjct 3318655 TCTGCACTTCTTGACTAAAGCGCTCAACCAGGTTCTCATTGACAATGCCATCAGAGGCTG 3318596 Query 19379 CAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTA-ATGTATTCCAA 19437 | |||||||| || |||||| |||||| || |||| || | | || | ||| Sbjct 3318595 CGAAAAATGCCAACACATGTGAAATAAAGTGACGCTCATTGTCTGTAAGACGT-TCCCAG 3318537 Query 19438 TCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGC 19493 ||| | || || ||||| | ||| |||||||| || |||||||| || || || || Sbjct 3318536 TCAGTCATGTCCTTAGACAGATCCACTTCTTCCACAGTCCAAAATGAGGCTTCGGC 3318481 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562108757841840