Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20busckii_20[refseq_20GCF_5F001277935.1_202015-09-02] 6 sequences; 135,748,557 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq4 215 4e-50 seq2 104 2e-16 seq3 87.8 1e-11 seq1 86.0 5e-11 >seq4 Length=26871514 Score = 215 bits (238), Expect = 4e-50 Identities = 405/588 (69%), Gaps = 8/588 (1%) Strand=Plus/Minus Query 549991 AGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAA 550050 |||| | ||||| ||||| || ||||| || ||| || ||||| | || |||| || Sbjct 23615466 AGCTGTTGGTATTGATTTGGGCACCACCTACTCTTGCGTGGGTGTGTTCCAGCATGGCAA 23615407 Query 550051 AGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCAC 550110 ||||| || |||||||| ||||| ||||| | || || ||||| |||||| | ||||| Sbjct 23615406 GGTTGAGATCATTGCCAACGATCAGGGTAATCGTACCACACCATCCTATGTTGCCTTCAC 23615347 Query 550111 GGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGC--CACTGGTAATCCTACC 550168 ||| || || | ||| |||||||||| || || | || | || || || || ||| Sbjct 23615346 GGACACGGAGCGTTTGATTGGTGATGCTGCCAAGAACCAGGTGGCAATG--AACCCAACC 23615289 Query 550169 AATACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAG 550228 | || || || ||||| || ||| | ||||| | | || | |||||| |||| ||| Sbjct 23615288 CAAACGATCTTCGATGCCAAGCGTCTTATTGGTCGCAAATTCGAGGATTCGGCTGTGCAG 23615229 Query 550229 GCAGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAA 550288 | || |||||||| ||||| || | |||| | ||| ||| || || | ||||| Sbjct 23615228 TCGGACATGAAGCACTGGCCCTTTGATGTTGTCAGCGTTGATGGCAAGCCCAAGATTGAG 23615169 Query 550289 GCTACTCATGAAGGATCTGTTAAACAATTT-TCACCAGAACAAATTTCATCTATGGTTTT 550347 | ||| | |||||| | || | ||| | || || | || || || ||||| || Sbjct 23615168 GTTACGTAC-AAGGATGAGAAGAAGACTTTCTTCCCCGAGGAGATCTCCTCCATGGTGTT 23615110 Query 550348 AATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTT-ACGGATGCAGTAA 550406 | || ||||| | || ||| || | |||| ||||| | | || |||| || | Sbjct 23615109 GACCAAGATGAAGGAGACCGCCGAGGCGTACCTTGG-CAAGACGGTGACAAATGCCGTCA 23615051 Query 550407 TAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTA 550466 | ||||| || || ||||| || ||||| || ||||| || || ||||||||||| | Sbjct 23615050 TCACTGTGCCCGCTTATTTCAACGACTCGCAGCGTCAGGCGACCAAAGATGCTGGTACCA 23614991 Query 550467 TTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATG 550526 |||| || | ||||| || ||||||||||| || || || || || || |||| |||| Sbjct 23614990 TTGCCGGTTTGAATGTGCTGCGTATTATCAACGAGCCCACGGCCGCGGCTATTGCCTATG 23614931 Query 550527 GACTTGATAAACATAATGATCAAGAACTTAATGTACTCATCTTTGATT 550574 | || || || | || | || | ||||| ||||| || |||| Sbjct 23614930 GTCTGGACAAGAAGGCTGTTGGTGAGCGCAATGTGCTCATTTTCGATT 23614883 Score = 102 bits (112), Expect = 7e-16 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 550396 GGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGA 550455 |||||| || || || || ||||| ||||| |||||||| |||||||| || || ||||| Sbjct 21271541 GGATGCGGTGATTACGGTGCCAGCCTATTTCAATGACTCGCAACGTCAGGCCACCAAAGA 21271600 Query 550456 TGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGC 550515 ||| || ||||| || | ||||| || || ||||||||||| || || || ||||| Sbjct 21271601 TGCGGGCTCCATTGCGGGCTTGAATGTGCTGCGCATTATCAATGAGCCAACAGCGGCTGC 21271660 Query 550516 ACTTGCATATGGACTTGATAA 550536 | || ||||| || || || Sbjct 21271661 CTTGGCCTATGGCCTGGACAA 21271681 >seq2 Length=22510139 Score = 104 bits (114), Expect = 2e-16 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 |||| | |||| || | ||||| || || || || || ||||| || ||||| ||||| Sbjct 12141891 GTTAAGAATGCTGTGGTTACTGTGCCTGCCTACTTCAACGACTCTCAGCGTCAGGCTACC 12141950 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCT 550510 || |||||||||| |||||||| | ||||| || ||| | ||||||||||| || || Sbjct 12141951 AAGGATGCTGGACAGATTGCTGGCTTGAATGTGCTGCGTGTAATCAATGAACCCACAGCC 12142010 Query 550511 GCTGCACTTGCATATGG 550527 |||||||| || || || Sbjct 12142011 GCTGCACTCGCCTACGG 12142027 >seq3 Length=28180402 Score = 87.8 bits (96), Expect = 1e-11 Identities = 130/182 (71%), Gaps = 2/182 (1%) Strand=Plus/Plus Query 550394 ACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAA 550453 || ||||| || | || || || || ||||| || ||||| || || || ||||| || Sbjct 13374779 ACTGATGCGGTCGTTACAGTGCCCGCCTATTTCAACGACTCGCAGCGCCAGGCTACGAAG 13374838 Query 550454 GATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCT 550513 ||||| || ||||| || || ||||| || || |||||||| || || || || || Sbjct 13374839 GATGCGGGCGCCATTGCCGGGCTGAATGTGCTGCGCATTATCAACGAGCCAACGGCGGCG 13374898 Query 550514 GCACTTGCATATGGACTTGATAAACATAATGATCAA-GAACTTAATGTACTCATCTTTGA 550572 || |||| ||||| || || || || | || || | |||||| ||||||||||| Sbjct 13374899 GCTATTGCTTATGGGCTGGACAAGCAGGGC-ACCAGTGAGCGTAATGTGCTCATCTTTGA 13374957 Query 550573 TT 550574 || Sbjct 13374958 TT 13374959 >seq1 Length=33300182 Score = 86.0 bits (94), Expect = 5e-11 Identities = 155/222 (70%), Gaps = 6/222 (3%) Strand=Plus/Minus Query 563256 GAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTT 563313 ||| ||||| || | || ||||| ||| |||| |||||| || || | ||||| Sbjct 5269460 GAGGCGGAGCACCAAGTGCAGGGTGGACTCCTTTTG--AATATTATAGTCGGACAGAGTA 5269403 Query 563314 CTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCT 563373 | |||||| | ||| || || || || || | | ||| ||||| |||||||||||| Sbjct 5269402 CGACCATCTTCCAATTGCTTGCCAGCGAAGATTAAACGTTGTTGATCTGGAGGAATTCCT 5269343 Query 563374 TCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAG 563432 ||||| || ||||| || ||| || || || ||||| | || || || || Sbjct 5269342 TCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTATCCGATGGTTCGAC-CTCAAG 5269284 Query 563433 AGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 ||| | || ||||| ||||| ||||||||||| || ||||| Sbjct 5269283 AGTGATGGTCTTACCCGTAAGGGTTTTAACGAAGATCTGCAT 5269242 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029295682692940