Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20busckii_20[refseq_20GCF_5F001277935.1_202015-09-02] 6 sequences; 135,748,557 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq2 122 1e-22 >seq2 Length=22510139 Score = 122 bits (134), Expect = 1e-22 Identities = 567/884 (64%), Gaps = 22/884 (2%) Strand=Plus/Minus Query 36824 TTTTTAAAAATCTTCATCTAACGTAAATTTTATTTCCTTATTACTATTCA---TAACTCC 36880 || |||||||||| ||||||| ||||| | ||| | | |||| | || || Sbjct 3319365 TTGTTAAAAATCTGCATCTAATGTAAACACATTATCCAGA---CGATTCGAGGTGACACC 3319309 Query 36881 CATTTTTTGATATTCTCCAACTCGTCTT-TCGAAAAAATTTGTCTTTCCTTCTAGTGATA 36939 ||| |||||| || || ||| |||| || || || || || ||||| || | || | Sbjct 3319308 CATGCGTTGATACTCGCCCACTT-TCTTCTCAAAGAAGTTAGTTTTTCCGTCCAACGAAA 3319250 Query 36940 TATTTTCCATAAAATCAAATGGATTAGATGTATTATATATAGTACT-ACATGATAATTCC 36998 | ||||||| || |||||||| ||||||||| || | | ||| | | ||| Sbjct 3319249 TCATTTCCATGAATGTCAATGGATTCTTTGTATTATAGATTTTTCCCACACCA-AGCTCC 3319191 Query 36999 TTCAGAAGCCTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATAGTTTATACCA 37058 ||| || | ||| || || || || ||||| | |||| || | |||| || ||| Sbjct 3319190 ACCAGCAGGCGATCAGCCACGAACTCAATGTACTCTGACATCAGAGCGCAGTTCATGCCA 3319131 Query 37059 ATTAGTTTTACTGGAATTGCATCT-TGAAGAAATAGTTTTTCTATTATTACAGCATCTTT 37117 || | || ||||| | |||||| ||| ||| | | || | || | |||||||| | Sbjct 3319130 ATCAAGTTAACTGGCAGAGCATCTGTGAGGAACTCCTGTT-CAATCTTGACAGCATCCTC 3319072 Query 37118 AACTATATTAACAATAACTTCTTCAGTTGGGGGATATTTTA---AATATTTAAACAATAA 37174 || || | |||| | ||| |||| || | ||| |||| | | Sbjct 3319071 AA---TAATTGCAATGATGCGCTCACGGCTGGGACGTTGCACCAAATGGCGGAACA-TCA 3319016 Query 37175 ACATG-CAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTA 37233 ||| | |||| ||||| || || || ||||| | || | ||||| || ||||| | Sbjct 3319015 ACACGGCAAAGTCACAGTGCAAGCCCTCATCGCGCGAGATTAGCTCATTGGAGAAGGTCA 3318956 Query 37234 ATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGA 37293 | || ||||| | || | || || | ||| || || | || || || ||||| Sbjct 3318955 AGCCAGGCATGAGGCCACGCTTCTTTAGCCAGAAAATGGAGGCGAAGCTGCCGCTAAAGA 3318896 Query 37294 AAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGA-ACTATAATCA 37352 |||| || ||||| || || || || | || || || ||||||| | | Sbjct 3318895 AAATGCCCTCAACGGCGGCGAAGGCAATAATCCGCTCGCC-AAAGTTGGCAGCCTTGGAG 3318837 Query 37353 GAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTGCT 37412 || |||||| | || ||| || ||||| || ||| |||||||||||||| Sbjct 3318836 GATATCCATGATAATGCCCAGTCAGCCTTGCGCTTCACAGCCGGCATTGTTTCAATTGCA 3318777 Query 37413 TTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATAC 37472 || || ||| ||| | || ||| | ||| |||||||| || | ||||||| Sbjct 3318776 TTGAACAGATAGTCACGCTGTTGGGGATCACGGACATACGTATCAATGAGCACACTATAC 3318717 Query 37473 ATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGAT 37532 || || ||||| | ||| || || || ||||| || |||||||| || | || || | | Sbjct 3318716 ATCTCCGAGTGGACATTCTCCATCGCAATCTGGAATCCATAAAAGCAGCGTGCCTCTGTT 3318657 Query 37533 AATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAGCT 37592 | || || || | | ||| | || | | | ||| ||||| || || |||||| ||| Sbjct 3318656 ATCTGCACTTCTTGACTAAAGCGCTCAACCAGGTTCTCATTGACAATGCCATCAGAGGCT 3318597 Query 37593 GCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCATTTGATAATTTTTTCCAA 37652 || || || || | |||| | ||||| || | |||| | || | || ||| Sbjct 3318596 GCGAAAAATGCCAACACATGTGAAATAAAGTGACGCTCATTGTCTGTAAGACGTTCCCAG 3318537 Query 37653 TCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAA 37696 ||| | || || || || | ||| ||||| || || |||||||| Sbjct 3318536 TCAGTCATGTCCTTAGACAGATCCACTTCTTCCACAGTCCAAAA 3318493 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592316755576240