Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20busckii_20[refseq_20GCF_5F001277935.1_202015-09-02] 6 sequences; 135,748,557 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq1 138 9e-28 seq5 113 4e-20 seq3 96.9 3e-15 seq2 96.9 3e-15 >seq1 Length=33300182 Score = 138 bits (152), Expect = 9e-28 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || || ||||| || || ||||| ||||| || |||| | ||| | |||| ||| Sbjct 5269450 ACCAAGTGCAGGGTGGACTCCTTTTGAATATTATAGTCGGACAGAGTACGACCATCTTCC 5269391 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 |||||||| || || || || ||||| |||||||| || ||||| |||||||| || ||| Sbjct 5269390 AATTGCTTGCCAGCGAAGATTAAACGTTGTTGATCTGGAGGAATTCCTTCTTTGTCCTGA 5269331 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || ||| ||| |||| | ||| || || | ||| || |||||||||| || || Sbjct 5269330 ATCTTGGCTTTGACATTTTCGATAGTATCCGATGGTTCGACCTCAAGAGTGATGGTCTTA 5269271 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || | ||||| || || |||||||| Sbjct 5269270 CCCGTAAGGGTTTTAACGAAGATCTGCAT 5269242 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || || || || || || || || || ||||| |||| | ||| | | |||| ||| Sbjct 90676 ACCAAGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTACGGCCATCTTCC 90735 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | ||||| || || || ||||||||||| ||||| || ||||| || ||||| ||||| Sbjct 90736 AGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATTCCCTCTTTGTCTTGG 90795 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || || ||| | || | |||||||| | || || || | |||| || ||| Sbjct 90796 ATCTTGGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACCTCCAAGGTGATGGTCTTG 90855 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| | ||||| ||||| || ||||| Sbjct 90856 CCGGTGAGGGTTTTCACAAAGATTTGCAT 90884 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || || || || || || || || || ||||| |||| | ||| | | |||| ||| Sbjct 2542936 ACCAAGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTACGGCCATCTTCC 2542877 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | ||||| || || || ||||||||||| ||||| || ||||| || ||||| ||||| Sbjct 2542876 AGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATTCCCTCTTTGTCTTGG 2542817 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || || ||| | || | |||||||| | || || || | |||| || ||| Sbjct 2542816 ATCTTGGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACCTCCAAGGTGATGGTCTTG 2542757 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| | ||||| ||||| || ||||| Sbjct 2542756 CCGGTGAGGGTTTTCACAAAGATTTGCAT 2542728 >seq5 Length=23724088 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 |||| || | | ||| ||||| ||||| ||||| || || || || |||||||| || | Sbjct 5414484 TTCCGCCGCGAAGACGCAAAACCAAATGGAGGGTTGACTCCTTCTGGATATTGTAGTCAG 5414425 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | ||| | |||| |||| ||||| || || || ||||||||||| ||||| || | Sbjct 5414424 AAAGAGTACGTCCATCCTCCAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGATCTGGGG 5414365 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 |||| ||||| || || ||||| || || || | || | || ||||| | || | Sbjct 5414364 GAATACCTTCCTTGTCCTGAATCTTGGCCTTAACGTTCTCAATGGTATCAGAGGGCTCAA 5414305 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 | || || |||| || ||||| || || || || || || || |||||| Sbjct 5414304 CCTCGAGGGTGATGGTCTTGCCAGTCAAGGTCTTGACGAAGATTTGCATG 5414255 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| || || || || ||||| || || || || || || ||||| | | ||| | | Sbjct 5413787 ACGCAACACCAAGTGGAGGGTTGACTCCTTCTGGATGTTATAATCAGAAAGAGTACGTCC 5413728 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 ||| || | ||||| || ||||| ||||||||||| || || || ||||| || || || Sbjct 5413727 ATCCTCAAGCTGCTTGCCAGCAAAAATCAAACGCTGCTGGTCTGGGGGAATACCCTCCTT 5413668 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 || ||||| || || ||| | || | || ||||| | || ||||| | |||| Sbjct 5413667 GTCCTGAATCTTGGCCTTGACATTCTCAATGGTATCAGAAGGCTCAACTTCCAAGGTGAT 5413608 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || ||||| ||||||||||| || || |||||||| Sbjct 5413607 TGTCTTGCCAGTTAAAGTTTTGACGAAAATCTGCAT 5413572 Score = 98.7 bits (108), Expect = 8e-16 Identities = 152/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| || || || || ||||| || || || || || || ||||| | | ||| | | Sbjct 5414015 ACGCAACACCAAGTGGAGGGTTGACTCCTTCTGGATGTTATAATCAGAAAGAGTACGTCC 5413956 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 ||| |||| ||||| || || || ||||||||||| ||||| || ||||| ||||| || Sbjct 5413955 ATCCTCCAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGATCTGGGGGAATACCTTCCTT 5413896 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 || ||||| || || || | || | || ||||| | || || || || |||| Sbjct 5413895 GTCCTGAATCTTGGCCTTAACGTTCTCAATGGTATCAGAGGGCTCAACCTCGAGGGTGAT 5413836 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || ||||| || || || || || || || |||||| Sbjct 5413835 GGTCTTGCCAGTCAAGGTCTTGACGAAGATTTGCATG 5413799 Score = 98.7 bits (108), Expect = 8e-16 Identities = 152/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| || || || || ||||| || || || || || || ||||| | | ||| | | Sbjct 5414243 ACGCAACACCAAGTGGAGGGTTGACTCCTTCTGGATGTTATAATCAGAAAGAGTACGTCC 5414184 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 ||| |||| ||||| || || || ||||||||||| ||||| || ||||| ||||| || Sbjct 5414183 ATCCTCCAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGATCTGGGGGAATACCTTCCTT 5414124 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 || ||||| || || || | || | || ||||| | || || || || |||| Sbjct 5414123 GTCCTGAATCTTGGCCTTAACGTTCTCAATGGTATCAGAGGGCTCAACCTCGAGGGTGAT 5414064 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || ||||| || || || || || || || |||||| Sbjct 5414063 GGTCTTGCCAGTCAAGGTCTTGACGAAGATTTGCATG 5414027 >seq3 Length=28180402 Score = 96.9 bits (106), Expect = 3e-15 Identities = 171/247 (69%), Gaps = 3/247 (1%) Strand=Plus/Plus Query 101223 ATTTAATATACTAGACATTTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTT 101282 ||||||| || || ||| ||| || | | ||| | ||| || ||||||||||| || | Sbjct 22368548 ATTTAATTTA--AG-CATGTCCACCACGCAGACGGAGAACCAAGTGAAGGGTAGACTCCT 22368604 Query 101283 TTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCA 101342 | || || ||||| |||| | ||| | |||| ||||| ||||| || || || |||| Sbjct 22368605 TCTGAATGTTGTAGTCGGACAGAGTGCGTCCATCCTCCAACTGCTTGCCGGCGAAGATCA 22368664 Query 101343 AACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTA 101402 |||||| || || || || ||||| || || ||||| || || || ||| | || | Sbjct 22368665 GACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTCACATTCTCAA 22368724 Query 101403 CAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATA 101462 ||||| | || || || | |||| || ||||| || | || || || || | Sbjct 22368725 TGGTGTCGCTGGGCTCAACCTCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGA 22368784 Query 101463 TCTGCAT 101469 ||||||| Sbjct 22368785 TCTGCAT 22368791 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || || ||||| || || || || || ||||| |||| | ||| | |||| ||| Sbjct 22369951 ACCAAGTGGAGGGTTGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCATCCTCC 22370010 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 || ||||| || || || |||| |||||| || || || || ||||| || || ||||| Sbjct 22370011 AACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGG 22370070 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || || ||| | || | ||||| | || || || | |||| || ||| Sbjct 22370071 ATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCAACCTCCAAGGTGATGGTCTTG 22370130 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCATGGTT 101473 || || || || || ||||| |||||||||||| Sbjct 22370131 CCAGTCAATGTCTTCACAAAGATCTGCATGGTT 22370163 >seq2 Length=22510139 Score = 96.9 bits (106), Expect = 3e-15 Identities = 188/278 (68%), Gaps = 0/278 (0%) Strand=Plus/Minus Query 13655 AATTTTCGTTTACAACCTTCAAAATTCATGTGTCGTATTTTACCATAGATTGGTCGCTCC 13714 || || || || || |||| | | ||||| | || || |||||| |||| | ||||| Sbjct 17628948 AACTTGCGCTTGCAGCCTTGATAGTTCATATAGCGAATCTTACCAAAGATGGCACGCTCT 17628889 Query 13715 ATCCAGGCACGATCGTGAGTTCCGCATATTGACCACATGCAACCGGCATAACCGTTGGGA 13774 |||| | |||| || | |||| || ||||||||||| || ||||||| || ||| Sbjct 17628888 TTCCAACCTTGATCATGTATGCCGCCGATGGACCACATGCAGCCCACATAACCATTAGGA 17628829 Query 13775 TCGCGTCCATCCAAACTGTATTTGTCGTTGAAATATATGGCGTTGATTAAAGCCACTGTA 13834 || || ||||| | ||| ||||| || || | |||| || | ||||||| | Sbjct 17628828 TCACGACCATCGAGACTATATTTATCATTAAGCAATATAGCATACTCCAAAGCCAGCTCA 17628769 Query 13835 GGCGAAATAGACCATTCTAATAtttttttAGCCCAATATATTCTCATATATCCGTGCATT 13894 || | || ||| || | ||||| || |||||||| || | | | | || |||||| Sbjct 17628768 GGAGTCTCAGTCCACTCAAGAATTTTCTTGGCCCAATACATGCGTAAAAAGCCATGCATT 17628709 Query 13895 TTGCCTTGCGTTTTAAGCTGTGTCTGAGCAGCGTTCCA 13932 ||||| | | |||||| ||| || | |||||| Sbjct 17628708 TTGCCCTCCTGCACAAGCTGCAGCTGCGCCGAGTTCCA 17628671 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396278371022142