Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20busckii_20[refseq_20GCF_5F001277935.1_202015-09-02]
6 sequences; 135,748,557 total letters
Query= NC_018504.1
Length=123876
Score E
Sequences producing significant alignments: (Bits) Value
seq1 138 9e-28
seq5 113 4e-20
seq3 96.9 3e-15
seq2 96.9 3e-15
>seq1
Length=33300182
Score = 138 bits (152), Expect = 9e-28
Identities = 156/209 (75%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320
|| || || ||||| || || ||||| ||||| || |||| | ||| | |||| |||
Sbjct 5269450 ACCAAGTGCAGGGTGGACTCCTTTTGAATATTATAGTCGGACAGAGTACGACCATCTTCC 5269391
Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380
|||||||| || || || || ||||| |||||||| || ||||| |||||||| || |||
Sbjct 5269390 AATTGCTTGCCAGCGAAGATTAAACGTTGTTGATCTGGAGGAATTCCTTCTTTGTCCTGA 5269331
Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440
|| || ||| ||| |||| | ||| || || | ||| || |||||||||| || ||
Sbjct 5269330 ATCTTGGCTTTGACATTTTCGATAGTATCCGATGGTTCGACCTCAAGAGTGATGGTCTTA 5269271
Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469
|| || | ||||| || || ||||||||
Sbjct 5269270 CCCGTAAGGGTTTTAACGAAGATCTGCAT 5269242
Score = 111 bits (122), Expect = 1e-19
Identities = 150/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320
|| || || || || || || || || || ||||| |||| | ||| | | |||| |||
Sbjct 90676 ACCAAGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTACGGCCATCTTCC 90735
Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380
| ||||| || || || ||||||||||| ||||| || ||||| || ||||| |||||
Sbjct 90736 AGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATTCCCTCTTTGTCTTGG 90795
Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440
|| || || ||| | || | |||||||| | || || || | |||| || |||
Sbjct 90796 ATCTTGGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACCTCCAAGGTGATGGTCTTG 90855
Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469
||||| | ||||| ||||| || |||||
Sbjct 90856 CCGGTGAGGGTTTTCACAAAGATTTGCAT 90884
Score = 111 bits (122), Expect = 1e-19
Identities = 150/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320
|| || || || || || || || || || ||||| |||| | ||| | | |||| |||
Sbjct 2542936 ACCAAGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTACGGCCATCTTCC 2542877
Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380
| ||||| || || || ||||||||||| ||||| || ||||| || ||||| |||||
Sbjct 2542876 AGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATTCCCTCTTTGTCTTGG 2542817
Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440
|| || || ||| | || | |||||||| | || || || | |||| || |||
Sbjct 2542816 ATCTTGGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACCTCCAAGGTGATGGTCTTG 2542757
Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469
||||| | ||||| ||||| || |||||
Sbjct 2542756 CCGGTGAGGGTTTTCACAAAGATTTGCAT 2542728
>seq5
Length=23724088
Score = 113 bits (124), Expect = 4e-20
Identities = 163/230 (71%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300
|||| || | | ||| ||||| ||||| ||||| || || || || |||||||| || |
Sbjct 5414484 TTCCGCCGCGAAGACGCAAAACCAAATGGAGGGTTGACTCCTTCTGGATATTGTAGTCAG 5414425
Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360
| ||| | |||| |||| ||||| || || || ||||||||||| ||||| || |
Sbjct 5414424 AAAGAGTACGTCCATCCTCCAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGATCTGGGG 5414365
Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420
|||| ||||| || || ||||| || || || | || | || ||||| | || |
Sbjct 5414364 GAATACCTTCCTTGTCCTGAATCTTGGCCTTAACGTTCTCAATGGTATCAGAGGGCTCAA 5414305
Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470
| || || |||| || ||||| || || || || || || || ||||||
Sbjct 5414304 CCTCGAGGGTGATGGTCTTGCCAGTCAAGGTCTTGACGAAGATTTGCATG 5414255
Score = 111 bits (122), Expect = 1e-19
Identities = 154/216 (71%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313
||| || || || || ||||| || || || || || || ||||| | | ||| | |
Sbjct 5413787 ACGCAACACCAAGTGGAGGGTTGACTCCTTCTGGATGTTATAATCAGAAAGAGTACGTCC 5413728
Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373
||| || | ||||| || ||||| ||||||||||| || || || ||||| || || ||
Sbjct 5413727 ATCCTCAAGCTGCTTGCCAGCAAAAATCAAACGCTGCTGGTCTGGGGGAATACCCTCCTT 5413668
Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433
|| ||||| || || ||| | || | || ||||| | || ||||| | ||||
Sbjct 5413667 GTCCTGAATCTTGGCCTTGACATTCTCAATGGTATCAGAAGGCTCAACTTCCAAGGTGAT 5413608
Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469
|| ||||| ||||||||||| || || ||||||||
Sbjct 5413607 TGTCTTGCCAGTTAAAGTTTTGACGAAAATCTGCAT 5413572
Score = 98.7 bits (108), Expect = 8e-16
Identities = 152/217 (70%), Gaps = 0/217 (0%)
Strand=Plus/Minus
Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313
||| || || || || ||||| || || || || || || ||||| | | ||| | |
Sbjct 5414015 ACGCAACACCAAGTGGAGGGTTGACTCCTTCTGGATGTTATAATCAGAAAGAGTACGTCC 5413956
Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373
||| |||| ||||| || || || ||||||||||| ||||| || ||||| ||||| ||
Sbjct 5413955 ATCCTCCAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGATCTGGGGGAATACCTTCCTT 5413896
Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433
|| ||||| || || || | || | || ||||| | || || || || ||||
Sbjct 5413895 GTCCTGAATCTTGGCCTTAACGTTCTCAATGGTATCAGAGGGCTCAACCTCGAGGGTGAT 5413836
Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470
|| ||||| || || || || || || || ||||||
Sbjct 5413835 GGTCTTGCCAGTCAAGGTCTTGACGAAGATTTGCATG 5413799
Score = 98.7 bits (108), Expect = 8e-16
Identities = 152/217 (70%), Gaps = 0/217 (0%)
Strand=Plus/Minus
Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313
||| || || || || ||||| || || || || || || ||||| | | ||| | |
Sbjct 5414243 ACGCAACACCAAGTGGAGGGTTGACTCCTTCTGGATGTTATAATCAGAAAGAGTACGTCC 5414184
Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373
||| |||| ||||| || || || ||||||||||| ||||| || ||||| ||||| ||
Sbjct 5414183 ATCCTCCAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGATCTGGGGGAATACCTTCCTT 5414124
Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433
|| ||||| || || || | || | || ||||| | || || || || ||||
Sbjct 5414123 GTCCTGAATCTTGGCCTTAACGTTCTCAATGGTATCAGAGGGCTCAACCTCGAGGGTGAT 5414064
Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470
|| ||||| || || || || || || || ||||||
Sbjct 5414063 GGTCTTGCCAGTCAAGGTCTTGACGAAGATTTGCATG 5414027
>seq3
Length=28180402
Score = 96.9 bits (106), Expect = 3e-15
Identities = 171/247 (69%), Gaps = 3/247 (1%)
Strand=Plus/Plus
Query 101223 ATTTAATATACTAGACATTTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTT 101282
||||||| || || ||| ||| || | | ||| | ||| || ||||||||||| || |
Sbjct 22368548 ATTTAATTTA--AG-CATGTCCACCACGCAGACGGAGAACCAAGTGAAGGGTAGACTCCT 22368604
Query 101283 TTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCA 101342
| || || ||||| |||| | ||| | |||| ||||| ||||| || || || ||||
Sbjct 22368605 TCTGAATGTTGTAGTCGGACAGAGTGCGTCCATCCTCCAACTGCTTGCCGGCGAAGATCA 22368664
Query 101343 AACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTA 101402
|||||| || || || || ||||| || || ||||| || || || ||| | || |
Sbjct 22368665 GACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTCACATTCTCAA 22368724
Query 101403 CAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATA 101462
||||| | || || || | |||| || ||||| || | || || || || |
Sbjct 22368725 TGGTGTCGCTGGGCTCAACCTCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGA 22368784
Query 101463 TCTGCAT 101469
|||||||
Sbjct 22368785 TCTGCAT 22368791
Score = 96.9 bits (106), Expect = 3e-15
Identities = 149/213 (70%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320
|| || || ||||| || || || || || ||||| |||| | ||| | |||| |||
Sbjct 22369951 ACCAAGTGGAGGGTTGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCATCCTCC 22370010
Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380
|| ||||| || || || |||| |||||| || || || || ||||| || || |||||
Sbjct 22370011 AACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGG 22370070
Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440
|| || || ||| | || | ||||| | || || || | |||| || |||
Sbjct 22370071 ATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCAACCTCCAAGGTGATGGTCTTG 22370130
Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCATGGTT 101473
|| || || || || ||||| ||||||||||||
Sbjct 22370131 CCAGTCAATGTCTTCACAAAGATCTGCATGGTT 22370163
>seq2
Length=22510139
Score = 96.9 bits (106), Expect = 3e-15
Identities = 188/278 (68%), Gaps = 0/278 (0%)
Strand=Plus/Minus
Query 13655 AATTTTCGTTTACAACCTTCAAAATTCATGTGTCGTATTTTACCATAGATTGGTCGCTCC 13714
|| || || || || |||| | | ||||| | || || |||||| |||| | |||||
Sbjct 17628948 AACTTGCGCTTGCAGCCTTGATAGTTCATATAGCGAATCTTACCAAAGATGGCACGCTCT 17628889
Query 13715 ATCCAGGCACGATCGTGAGTTCCGCATATTGACCACATGCAACCGGCATAACCGTTGGGA 13774
|||| | |||| || | |||| || ||||||||||| || ||||||| || |||
Sbjct 17628888 TTCCAACCTTGATCATGTATGCCGCCGATGGACCACATGCAGCCCACATAACCATTAGGA 17628829
Query 13775 TCGCGTCCATCCAAACTGTATTTGTCGTTGAAATATATGGCGTTGATTAAAGCCACTGTA 13834
|| || ||||| | ||| ||||| || || | |||| || | ||||||| |
Sbjct 17628828 TCACGACCATCGAGACTATATTTATCATTAAGCAATATAGCATACTCCAAAGCCAGCTCA 17628769
Query 13835 GGCGAAATAGACCATTCTAATAtttttttAGCCCAATATATTCTCATATATCCGTGCATT 13894
|| | || ||| || | ||||| || |||||||| || | | | | || ||||||
Sbjct 17628768 GGAGTCTCAGTCCACTCAAGAATTTTCTTGGCCCAATACATGCGTAAAAAGCCATGCATT 17628709
Query 13895 TTGCCTTGCGTTTTAAGCTGTGTCTGAGCAGCGTTCCA 13932
||||| | | |||||| ||| || | ||||||
Sbjct 17628708 TTGCCCTCCTGCACAAGCTGCAGCTGCGCCGAGTTCCA 17628671
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 396278371022142
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