Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20busckii_20[refseq_20GCF_5F001277935.1_202015-09-02] 6 sequences; 135,748,557 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq5 107 1e-18 seq3 96.9 3e-15 seq1 93.3 3e-14 >seq5 Length=23724088 Score = 107 bits (118), Expect = 1e-18 Identities = 155/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||||||||| || || || ||| || || || || |||||||| ||| | || Sbjct 5413789 AGACGCAACACCAAGTGGAGGGTTGACTCCTTCTGGATGTTATAATCAGAAAGAGTACGT 5413730 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | |||||| || ||||| |||| ||||| || || | ||||| |||||| Sbjct 5413729 CCATCCTCAAGCTGCTTGCCAGCAAAAATCAAACGCTGCTGGTCTGGGGGAATACCCTCC 5413670 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| |||||| || ||| | | | || || | ||| || |||| || Sbjct 5413669 TTGTCCTGAATCTTGGCCTTGACATTCTCAATGGTATCAGAAGGCTCAACTTCCAAGGTG 5413610 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 || || || || || |||||||| || |||||||||||| Sbjct 5413609 ATTGTCTTGCCAGTTAAAGTTTTGACGAAAATCTGCATC 5413571 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||||||||| || || || ||| || || || || |||||||| ||| | || Sbjct 5414017 AGACGCAACACCAAGTGGAGGGTTGACTCCTTCTGGATGTTATAATCAGAAAGAGTACGT 5413958 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| |||||| || || || |||| ||||| ||||| | ||||| || ||| Sbjct 5413957 CCATCCTCCAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGATCTGGGGGAATACCTTCC 5413898 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| |||||| || || | | | || || | ||| ||||| | || Sbjct 5413897 TTGTCCTGAATCTTGGCCTTAACGTTCTCAATGGTATCAGAGGGCTCAACCTCGAGGGTG 5413838 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || ||||| || || || || || ||||| Sbjct 5413837 ATGGTCTTGCCAGTCAAGGTCTTGACGAAGATTTGCAT 5413800 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||||||||| || || || ||| || || || || |||||||| ||| | || Sbjct 5414245 AGACGCAACACCAAGTGGAGGGTTGACTCCTTCTGGATGTTATAATCAGAAAGAGTACGT 5414186 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| |||||| || || || |||| ||||| ||||| | ||||| || ||| Sbjct 5414185 CCATCCTCCAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGATCTGGGGGAATACCTTCC 5414126 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| |||||| || || | | | || || | ||| ||||| | || Sbjct 5414125 TTGTCCTGAATCTTGGCCTTAACGTTCTCAATGGTATCAGAGGGCTCAACCTCGAGGGTG 5414066 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || ||||| || || || || || ||||| Sbjct 5414065 ATGGTCTTGCCAGTCAAGGTCTTGACGAAGATTTGCAT 5414028 >seq3 Length=28180402 Score = 96.9 bits (106), Expect = 3e-15 Identities = 154/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | |||||| || || || ||| || ||||| ||||| || || ||| | || Sbjct 22369942 AGACGGAGCACCAAGTGGAGGGTTGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGT 22370001 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || ||||||||||| ||||| || ||||| ||||| || || | ||| | ||||||| Sbjct 22370002 CCATCCTCCAACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCC 22370061 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || ||| | | | || | ||| ||||||| || Sbjct 22370062 TTGTCTTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCAACCTCCAAGGTG 22370121 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGT 48769 || || || || ||||| || || ||||| |||||||| || Sbjct 22370122 ATGGTCTTGCCAGTCAATGTCTTCACAAAGATCTGCATGGT 22370162 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | |||||| || || || ||| || ||||| ||||| || || ||| | || Sbjct 22368802 AGACGGAGCACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGT 22368861 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || ||||||||||| ||||| || ||||| ||||| || || | ||| | ||||||| Sbjct 22368862 CCATCCTCCAACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCC 22368921 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || ||| | | | || | ||| ||||||| || Sbjct 22368922 TTGTCTTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCAACCTCCAAGGTG 22368981 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || |||| || || || || |||||||| Sbjct 22368982 ATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 22369019 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | |||||| || || || ||| || ||||| ||||| || || ||| | || Sbjct 22369030 AGACGGAGCACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGT 22369089 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || ||||||||||| ||||| || ||||| ||||| || || | ||| | ||||||| Sbjct 22369090 CCATCCTCCAACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCC 22369149 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || ||| | | | || | ||| ||||||| || Sbjct 22369150 TTGTCTTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCAACCTCCAAGGTG 22369209 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || |||| || || || || |||||||| Sbjct 22369210 ATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 22369247 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | |||||| || || || ||| || ||||| ||||| || || ||| | || Sbjct 22369258 AGACGGAGCACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGT 22369317 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || ||||||||||| ||||| || ||||| ||||| || || | ||| | ||||||| Sbjct 22369318 CCATCCTCCAACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCC 22369377 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || ||| | | | || | ||| ||||||| || Sbjct 22369378 TTGTCTTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCAACCTCCAAGGTG 22369437 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || |||| || || || || |||||||| Sbjct 22369438 ATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 22369475 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | |||||| || || || ||| || ||||| ||||| || || ||| | || Sbjct 22369486 AGACGGAGCACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGT 22369545 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || ||||||||||| ||||| || ||||| ||||| || || | ||| | ||||||| Sbjct 22369546 CCATCCTCCAACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCC 22369605 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || ||| | | | || | ||| ||||||| || Sbjct 22369606 TTGTCTTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCAACCTCCAAGGTG 22369665 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || |||| || || || || |||||||| Sbjct 22369666 ATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 22369703 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | |||||| || || || ||| || ||||| ||||| || || ||| | || Sbjct 22369714 AGACGGAGCACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGT 22369773 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || ||||||||||| ||||| || ||||| ||||| || || | ||| | ||||||| Sbjct 22369774 CCATCCTCCAACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCC 22369833 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || ||| | | | || | ||| ||||||| || Sbjct 22369834 TTGTCTTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCAACCTCCAAGGTG 22369893 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || |||| || || || || |||||||| Sbjct 22369894 ATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 22369931 Score = 86.0 bits (94), Expect = 5e-12 Identities = 124/175 (71%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 7827 GCGTCTGCTCACGTTCAAGGACTGGCCGAAGAGTATAAAGCAGAAACCAAAGCAGCTTGC 7886 |||||||| || |||| ||||||||| | || || ||||| ||| |||||| || Sbjct 5223225 GCGTCTGCGCAGCTTCACCGACTGGCCGCGCAACATGAAACAGAAGCCAGTGCAGCTCGC 5223284 Query 7887 CGAAGCTGGATTATACTACACGGGCCGCGGTGATATGACAAAGTGTTTCTACTGTGACGG 7946 ||| || || || | |||||| ||| ||| ||| || ||| ||||| ||| Sbjct 5223285 CGAGGCGGGTTTCTTCTACACCGGCGTCGGCGATCGCGTGCGCTGCTTCAGCTGTGGCGG 5223344 Query 7947 GGGTCTCAAAGATTGGGAGGAAAACGATATACCGTGGGAGCAACACGCGCGCTGG 8001 || || || |||||||| || ||||| || ||||||||||| |||| |||| Sbjct 5223345 TGGCCTGAAGGATTGGGACGACAACGACGAGCCCTGGGAGCAACATGCGCTCTGG 5223399 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || || || ||| || ||||| ||||| || || ||| | || | || ||| Sbjct 22368583 ACCAAGTGAAGGGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCATCCTCC 22368642 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 |||||||| ||||| || ||||| ||||| || || | ||| | |||||||||||| Sbjct 22368643 AACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGG 22368702 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| || ||| | | | || | ||| ||||||| || || || || Sbjct 22368703 ATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCAACCTCCAAGGTGATGGTCTTG 22368762 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || |||| || || || || |||||||| Sbjct 22368763 CCAGTCAGGGTCTTCACGAAGATCTGCAT 22368791 >seq1 Length=33300182 Score = 93.3 bits (102), Expect = 3e-14 Identities = 152/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | |||||| || || ||| ||| ||||||||||| || || || ||| | ||| Sbjct 5269459 AGGCGGAGCACCAAGTGCAGGGTGGACTCCTTTTGAATATTATAGTCGGACAGAGTACGA 5269400 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || ||||| ||||| || || || || | || |||||||| | |||| || || Sbjct 5269399 CCATCTTCCAATTGCTTGCCAGCGAAGATTAAACGTTGTTGATCTGGAGGAATTCCTTCT 5269340 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| |||||| ||| ||| | | || || || | || ||||| | || Sbjct 5269339 TTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTATCCGATGGTTCGACCTCAAGAGTG 5269280 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 || || || ||||| | ||||| || || ||||||||| Sbjct 5269279 ATGGTCTTACCCGTAAGGGTTTTAACGAAGATCTGCATC 5269241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380937572143938