Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20busckii_20[refseq_20GCF_5F001277935.1_202015-09-02] 6 sequences; 135,748,557 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq2 221 2e-52 >seq2 Length=22510139 Score = 221 bits (244), Expect = 2e-52 Identities = 551/827 (67%), Gaps = 21/827 (3%) Strand=Plus/Minus Query 47840 TGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCC 47899 || || || |||||| | |||||||||||||| || || || |||||||| || | ||| Sbjct 3319301 TGATACTCGCCCACTTTCTTCTCAAAGAAGTTAGTTTTTCCGTCCAACGAAATCATTTCC 3319242 Query 47900 ATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAGG 47959 ||||| || || || ||| ||||| | | || || | || |||||||| Sbjct 3319241 ATGAATGTCAATGGATTCTTTGTATTATAGATTTTTCCCACACCAAGCTCCACCAGCAGG 3319182 Query 47960 TGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGAC 48019 |||| || ||| |||| ||||| | |||||| || | | ||||||||| || | | Sbjct 3319181 CGATCAGCCACGAACTCAATGTACTCTGACATCAGAGCGCAGTTCATGCCAATCAAGTTA 3319122 Query 48020 ACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTGC 48079 || |||| ||| | |||||| ||||||| || |||| || || ||| | | ||| ||| Sbjct 3319121 ACTGGCAGAGCATCTGTGAGGAACTCCTGTTCAATCTTGACAGCATCCTCAATAAT-TGC 3319063 Query 48080 T-TAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCA---GGC 48135 | | ||| | | | || ||||| | |||| || ||| | ||| Sbjct 3319062 AATGATGCGCT-CACGGCTGGGACGTTGCACCAAA---TGGCG--GAACATCAACACGGC 3319009 Query 48136 AAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGG 48195 |||||| | ||||||||| || || || ||| ||| | ||||||||| | ||||| Sbjct 3319008 AAAGTCACAGTGCAAGCCCTCATCGCGCGAGATTAGCTCATTGGAGAAGGTCAAGCCAGG 3318949 Query 48196 CATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCC 48255 ||||| || | || || ||||||||||| | ||||| ||| ||||| ||||| Sbjct 3318948 CATGAGGCCACGCTTCTTTAGCCAGAAAATGGAGGCGAAGCTGCCGCTAAAGAAAATGCC 3318889 Query 48256 CTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCA 48315 ||| || || ||||| || | | || ||| || || || |||| || ||||| Sbjct 3318888 CTCAACGGCGGCGAAGGCAATAATCCGCTCGCCAAAGTTGGCAGCCTTGGAGGATATCCA 3318829 Query 48316 GGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAG 48375 || | |||||||| ||||| ||| | ||||| || || || || ||| || Sbjct 3318828 TGATAATGCCCAGTCAGCCTTGCGCTTCACAGCCGGCATTGTTTCAATTGCATTGAACAG 3318769 Query 48376 CTTCTTGCACTCACCTGCG--TCCGCAACATAGGTAG---TGAGCAGCTTTGCGTACATC 48430 | | ||| | || | || ||||| ||| |||||| | |||||| Sbjct 3318768 ATAGT--CACGCTGTTGGGGATCACGGACATACGTATCAATGAGCACACTA---TACATC 3318714 Query 48431 TCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACC 48490 || ||||| |||||||| || || |||||||| || || ||| | ||||| | | Sbjct 3318713 TCCGAGTGGACATTCTCCATCGCAATCTGGAATCCATAAAAGCAGCGTGCCTCTGTTATC 3318654 Query 48491 TGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCA 48550 ||||||||| || | ||| | ||| ||||||||||| || ||||| || || || Sbjct 3318653 TGCACTTCTTGACTAAAGCGCTCAACCAGGTTCTCATTGACAATGCCATCAGAGGCTGCG 3318594 Query 48551 AAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCCC 48610 || || || | |||||| || || || ||||| |||| || ||| | |||| | Sbjct 3318593 AAAAATGCCAACACATGTGAAATAAAGTGACGCTCATTGTCTGTAAGACGTTCCCAGTCA 3318534 Query 48611 TGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGC 48657 | ||| || ||| |||||||||||||||||||| || || || Sbjct 3318533 GTCATGTCCTTAGACAGATCCACTTCTTCCACAGTCCAAAATGAGGC 3318487 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931532730135040