Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20busckii_20[refseq_20GCF_5F001277935.1_202015-09-02]
6 sequences; 135,748,557 total letters
Query= NC_019945.1
Length=132978
Score E
Sequences producing significant alignments: (Bits) Value
seq1 93.3 4e-14
>seq1
Length=33300182
Score = 93.3 bits (102), Expect = 4e-14
Identities = 150/213 (70%), Gaps = 2/213 (1%)
Strand=Plus/Plus
Query 28551 AAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCT 28610
|| ||||| || || || ||||| | |||||||| ||||| || || |||||
Sbjct 5269239 AAGATGCAGATCTTCGTTAAAACCCTTACGGGTAAGACCATCACTCTTGAGGTCGAACCA 5269298
Query 28611 TCAGAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGA 28669
|| || || | | || |||| || || | || |||||||| ||| | || |||
Sbjct 5269299 TCGGATACTATCGAAAATGTCAAAGCCAAGATTCAG-GACAAAGAAGGAATTCCTCCAGA 5269357
Query 28670 TCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTA 28729
|||||| | | ||||| || ||||| |||||||||||| | ||| || |||| ||
Sbjct 5269358 TCAACAACGTTTAATCTTCGCTGGCAAGCAATTGGAAGATGGTCGTACTCTGTCCGACTA 5269417
Query 28730 TAACATTCAAAAAGAATCTACTCTGCACATGGT 28762
||| |||||||| || || || |||||| ||||
Sbjct 5269418 TAATATTCAAAAGGAGTCCACCCTGCACTTGGT 5269450
Score = 89.7 bits (98), Expect = 4e-13
Identities = 147/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 28551 AAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCT 28610
|| |||||||| ||||| ||||| | || || || ||||| ||| || || ||
Sbjct 90887 AAGATGCAAATCTTTGTGAAAACCCTCACCGGCAAGACCATCACCTTGGAGGTCGAGCCC 90828
Query 28611 TCAGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGAT 28670
|| || || | | || ||||| || ||| |||||||||||| | ||| ||||
Sbjct 90827 TCTGACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAAGAGGGAATTCCCCCAGAT 90768
Query 28671 CAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTAT 28730
|| ||| | | ||||| || ||||| || |||||||| ||| || |||| ||
Sbjct 90767 CAGCAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAAGATGGCCGTACTCTGTCCGACTAC 90708
Query 28731 AACATTCAAAAAGAATCTACTCTGCACATGGT 28762
||||| || || || || ||||||||| ||||
Sbjct 90707 AACATCCAGAAGGAGTCGACTCTGCACTTGGT 90676
Score = 89.7 bits (98), Expect = 4e-13
Identities = 147/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 28551 AAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCT 28610
|| |||||||| ||||| ||||| | || || || ||||| ||| || || ||
Sbjct 2542725 AAGATGCAAATCTTTGTGAAAACCCTCACCGGCAAGACCATCACCTTGGAGGTCGAGCCC 2542784
Query 28611 TCAGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGAT 28670
|| || || | | || ||||| || ||| |||||||||||| | ||| ||||
Sbjct 2542785 TCTGACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAAGAGGGAATTCCCCCAGAT 2542844
Query 28671 CAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTAT 28730
|| ||| | | ||||| || ||||| || |||||||| ||| || |||| ||
Sbjct 2542845 CAGCAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAAGATGGCCGTACTCTGTCCGACTAC 2542904
Query 28731 AACATTCAAAAAGAATCTACTCTGCACATGGT 28762
||||| || || || || ||||||||| ||||
Sbjct 2542905 AACATCCAGAAGGAGTCGACTCTGCACTTGGT 2542936
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 425404768892274
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |