Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20busckii_20[refseq_20GCF_5F001277935.1_202015-09-02] 6 sequences; 135,748,557 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq1 93.3 4e-14 >seq1 Length=33300182 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 28551 AAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCT 28610 || ||||| || || || ||||| | |||||||| ||||| || || ||||| Sbjct 5269239 AAGATGCAGATCTTCGTTAAAACCCTTACGGGTAAGACCATCACTCTTGAGGTCGAACCA 5269298 Query 28611 TCAGAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGA 28669 || || || | | || |||| || || | || |||||||| ||| | || ||| Sbjct 5269299 TCGGATACTATCGAAAATGTCAAAGCCAAGATTCAG-GACAAAGAAGGAATTCCTCCAGA 5269357 Query 28670 TCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTA 28729 |||||| | | ||||| || ||||| |||||||||||| | ||| || |||| || Sbjct 5269358 TCAACAACGTTTAATCTTCGCTGGCAAGCAATTGGAAGATGGTCGTACTCTGTCCGACTA 5269417 Query 28730 TAACATTCAAAAAGAATCTACTCTGCACATGGT 28762 ||| |||||||| || || || |||||| |||| Sbjct 5269418 TAATATTCAAAAGGAGTCCACCCTGCACTTGGT 5269450 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 28551 AAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCT 28610 || |||||||| ||||| ||||| | || || || ||||| ||| || || || Sbjct 90887 AAGATGCAAATCTTTGTGAAAACCCTCACCGGCAAGACCATCACCTTGGAGGTCGAGCCC 90828 Query 28611 TCAGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGAT 28670 || || || | | || ||||| || ||| |||||||||||| | ||| |||| Sbjct 90827 TCTGACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAAGAGGGAATTCCCCCAGAT 90768 Query 28671 CAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTAT 28730 || ||| | | ||||| || ||||| || |||||||| ||| || |||| || Sbjct 90767 CAGCAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAAGATGGCCGTACTCTGTCCGACTAC 90708 Query 28731 AACATTCAAAAAGAATCTACTCTGCACATGGT 28762 ||||| || || || || ||||||||| |||| Sbjct 90707 AACATCCAGAAGGAGTCGACTCTGCACTTGGT 90676 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 28551 AAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCT 28610 || |||||||| ||||| ||||| | || || || ||||| ||| || || || Sbjct 2542725 AAGATGCAAATCTTTGTGAAAACCCTCACCGGCAAGACCATCACCTTGGAGGTCGAGCCC 2542784 Query 28611 TCAGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGAT 28670 || || || | | || ||||| || ||| |||||||||||| | ||| |||| Sbjct 2542785 TCTGACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAAGAGGGAATTCCCCCAGAT 2542844 Query 28671 CAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTAT 28730 || ||| | | ||||| || ||||| || |||||||| ||| || |||| || Sbjct 2542845 CAGCAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAAGATGGCCGTACTCTGTCCGACTAC 2542904 Query 28731 AACATTCAAAAAGAATCTACTCTGCACATGGT 28762 ||||| || || || || ||||||||| |||| Sbjct 2542905 AACATCCAGAAGGAGTCGACTCTGCACTTGGT 2542936 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425404768892274