Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20busckii_20[refseq_20GCF_5F001277935.1_202015-09-02] 6 sequences; 135,748,557 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq4 194 1e-43 seq1 118 7e-21 seq5 105 4e-17 >seq4 Length=26871514 Score = 194 bits (214), Expect = 1e-43 Identities = 377/548 (69%), Gaps = 8/548 (1%) Strand=Plus/Minus Query 474333 TTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTAG 474392 ||||||||||||| || || || ||| ||| || | ||| | || |||| || || | Sbjct 23615461 TTGGTATTGATTTGGGCACCACCTACTCTTGCGTGGGTGTGTTCCAGCATGGCAAGGTTG 23615402 Query 474393 AAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAAA 474452 | || |||||||| || || |||||| | || |||||||| |||||| | || || || | Sbjct 23615401 AGATCATTGCCAACGATCAGGGTAATCGTACCACACCATCCTATGTTGCCTTCACGGACA 23615342 Query 474453 CTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACTA 474512 | || | | | ||||| |||||||| || | || | ||| || || | || | Sbjct 23615341 CGGAGCGTTTGATTGGTGATGCTGCCAAGAACCAGGTGGCAATGAACCCAACCCAAACGA 23615282 Query 474513 TTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGATA 474572 | || ||||| || | | |||||||| || || || ||| | |||| || || || | Sbjct 23615281 TCTTCGATGCCAAGCGTCTTATTGGTCGCAAATTCGAGGATTCGGCTGTGCAGTCGGACA 23615222 Query 474573 TGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAGCAA--T 474630 || || ||||| ||| | || | | |||| ||| || || | || || | | | Sbjct 23615221 TGAAGCACTGGCCCTTTGATGTTGTCAGCGTTGATGGCAAGCCCAAGATTGAGGTTACGT 23615162 Query 474631 ACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAA 474690 ||| | | | | || | || | ||| || || | || || || ||||| || |||| Sbjct 23615161 ACAAGGATGAG-AAGAAGACTTTCTTC-CCCGAGGAGATCTCCTCCATGGTGTTGACCAA 23615104 Query 474691 AATGAAACAAACCG-CGAGCTCATATCTTGGACAAGA-AGTAACTGATGCAGTAATTACT 474748 ||||| | |||| |||| | || ||||| ||||| || || |||| || || ||| Sbjct 23615103 GATGAAGGAGACCGCCGAG-GCGTACCTTGG-CAAGACGGTGACAAATGCCGTCATCACT 23615046 Query 474749 GTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCA 474808 || || || ||||| || || || || ||||| || || |||||||| || | ||||| Sbjct 23615045 GTGCCCGCTTATTTCAACGACTCGCAGCGTCAGGCGACCAAAGATGCTGGTACCATTGCC 23614986 Query 474809 GGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTT 474868 ||| | ||||| | |||||||| || || || || || || || |||| |||||||| Sbjct 23614985 GGTTTGAATGTGCTGCGTATTATCAACGAGCCCACGGCCGCGGCTATTGCCTATGGTCTG 23614926 Query 474869 GATAAGAA 474876 || ||||| Sbjct 23614925 GACAAGAA 23614918 Score = 132 bits (146), Expect = 3e-25 Identities = 361/551 (66%), Gaps = 4/551 (1%) Strand=Plus/Plus Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388 || ||||||||||| || || || || ||| ||||| | ||| | ||| | || || Sbjct 17075539 GCGATTGGTATTGACTTGGGCACCACATACTCATGTGTGGGTGTCTATCAACACGGCAAG 17075598 Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448 || || || |||||||| ||||| || ||| | |||||||| ||||| | ||||| Sbjct 17075599 GTGGAGATCATTGCCAACGACCAGGGCAATCGCACAACACCCAGCTATGTGGCGTTTACA 17075658 Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAAT 474508 || | || | | | |||||||| ||||| || | || | ||| ||||| || Sbjct 17075659 GATTCGGAGCGTTTGATTGGAGACGCTGCCAAGAACCAGGTGGCAATGAATCCCAGAAAC 17075718 Query 474509 ACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCT 474568 || | |||||||| || | ||||||| || || | ||| ||| | | | Sbjct 17075719 ACAGTATTTGATGCAAAGCGCCTGATTGGCCGCAAGTATGACGATCCTAAGATTGCGGAG 17075778 Query 474569 GATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAG--AAG 474626 || || || ||||| || || ||| | | || || || || || | || | | Sbjct 17075779 GACATCAAGCACTGGCCCTTCAAAGTGGTTAGTGAAGGAGGCAAGCCTAAGATTGGCATC 17075838 Query 474627 CAATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAG 474686 ||| || | || ||| || | ||| |||| ||| | | || ||||| | | Sbjct 17075839 GAATTCAAG--GGAGAACAGAAGCGCTTTGCACCTGAAGAGGTCAGCTCGATGGTGCTGG 17075896 Query 474687 CCAAAATGAAACAAACCGCGAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATTA 474746 || ||||| | || || | ||||| || ||| | || || ||||| || | Sbjct 17075897 TGAAGATGAAGGAGACGGCTGAAGCGTATCTGGGTCAAAGCATCACAGACGCAGTCATCA 17075956 Query 474747 CTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTG 474806 | || || || ||||| ||||| |||||| | || |||||||| || || || |||| Sbjct 17075957 CAGTGCCCGCCTATTTCAATGACTCTCAAAGGCAGGCAACTAAGGAAGCCGGTCACATTG 17076016 Query 474807 CAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTC 474866 | || ||||| ||| | | || || || || || || || || ||||| |||||||| | Sbjct 17076017 CCGGGCTTAACGTTCTGAGAATCATCAACGAGCCTACTGCGGCGGCACTGGCTTATGGAC 17076076 Query 474867 TTGATAAGAAT 474877 | ||||||||| Sbjct 17076077 TAGATAAGAAT 17076087 Score = 122 bits (134), Expect = 6e-22 Identities = 257/377 (68%), Gaps = 10/377 (3%) Strand=Plus/Plus Query 474506 AATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAA 474565 ||||| | |||||||| || | |||||||| || || ||||||||| | | | | Sbjct 21271314 AATACGGTCTTTGATGCAAAGCGTTTGATTGGACGCAAGTTTGATGATCCGAAAATAAAG 21271373 Query 474566 TCTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAA 474625 || | |||||||| ||||||||| | | | ||| || || || | || ||| Sbjct 21271374 GAGGACCTCAAGCATTGGCCCTTTAAGGTGGTCAGCGATGGCGGCAAGCCCAAGATCGAA 21271433 Query 474626 GC--AATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTT 474683 | | | || | || ||| || | ||| |||| || | ||| || ||||| | Sbjct 21271434 GTGGAGTTCAAG--GGCGAACGCAAGCGCTTTGCACCCGAGGAGATTAGCTCCATGGTGT 21271491 Query 474684 TAGCCAAAATGAAACAAACCGC-GAGCTCATATCTTGGA--CAAGAAGTAACTGATGCAG 474740 | |||||||| | || || ||| | ||||| || |||| || | ||||| | Sbjct 21271492 TGACCAAAATGCGTGAGACTGCCGAGGTG-TATCTGGGTGCCAAG--GTGAAGGATGCGG 21271548 Query 474741 TAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAA 474800 | ||||| || ||||| ||||| ||||| || |||||||| || || ||||||||||| Sbjct 21271549 TGATTACGGTGCCAGCCTATTTCAATGACTCGCAACGTCAGGCCACCAAAGATGCGGGCT 21271608 Query 474801 GAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTT 474860 ||||| || | ||||| | || ||||| ||||| |||||||| || || | || | Sbjct 21271609 CCATTGCGGGCTTGAATGTGCTGCGCATTATCAATGAGCCAACAGCGGCTGCCTTGGCCT 21271668 Query 474861 ATGGTCTTGATAAGAAT 474877 |||| || || |||||| Sbjct 21271669 ATGGCCTGGACAAGAAT 21271685 >seq1 Length=33300182 Score = 118 bits (130), Expect = 7e-21 Identities = 161/221 (73%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGT--ACTTTCTTTAGAAACATTATAATCAGCTAGA 480608 ||| || ||||| || | || || || ||| |||| ||| |||||| || | ||| Sbjct 5269463 ACGGAGGCGGAGCACCAAGTGCAGGGTGGACTC-CTTTTGAAT-ATTATAGTCGGACAGA 5269406 Query 480609 GTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATT 480668 || | |||||| | |||||| ||||| || || | |||||||||||| ||||||||| Sbjct 5269405 GTACGACCATCTTCCAATTGCTTGCCAGCGAAGATTAAACGTTGTTGATCTGGAGGAATT 5269346 Query 480669 CCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCA 480728 ||||| ||||| |||||||| ||||||| ||| |||||||| | || ||| Sbjct 5269345 CCTTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTATCCGATGGTTCGACCTCA 5269286 Query 480729 AGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || ||||| || || || |||||||| || || Sbjct 5269285 AGAGTGATGGTCTTACCCGTAAGGGTTTTAACGAAGATCTG 5269245 >seq5 Length=23724088 Score = 105 bits (116), Expect = 4e-17 Identities = 131/177 (74%), Gaps = 2/177 (1%) Strand=Plus/Minus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 |||||||||| ||||| | ||| ||||| ||||| ||||||||||| | ||| || Sbjct 5413750 TTATAATCAGAAAGAGTACGTCCATCCTCAAGCTGCTTGCCAGCAAAAATCAAACGCTGC 5413691 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 || || || ||||| || |||||||| |||||||| |||||| ||||| |||||| Sbjct 5413690 TGGTCTGGGGGAATACCCTCCTTGTCCTGAATCTTGGCCTTGACATTCTCAATGGTATCA 5413631 Query 480714 G-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | | | || || ||| ||| || || || || || | ||| || |||||||| || Sbjct 5413630 GAAGGCTCAACTTCCAA-GGTGATTGTCTTGCCAGTTAAAGTTTTGACGAAAATCTG 5413575 Score = 98.7 bits (108), Expect = 6e-15 Identities = 121/163 (74%), Gaps = 2/163 (1%) Strand=Plus/Minus Query 817100 GATTTTTCATCTCCAAATATTGCAAAGGAAATGCATATTGGACACTTGAGATCTACAATA 817159 || ||||| || ||||| || |||||| |||||||| ||||||| ||| | ||||| || Sbjct 19402073 GACTTTTCGTCGCCAAACATCGCAAAGCAAATGCATGTTGGACATTTGCGTTCTACCATT 19402014 Query 817160 ATTGGTGAATCTCTTTGTAGAATATATGAATTTTGTGGATG-TGAAGTACAAAGAATAAA 817218 |||||||| || |||| | | ||| || | || | ||| || | | ||||| Sbjct 19402013 ATTGGTGAGTCCATTTGCCGCCTGCTTGAGTTCT-TGCAGCATGATGTTATACGCATAAA 19401955 Query 817219 TCATATTGGTGATTGGGGAACACAATTTGGTATGTTAATTGCA 817261 |||| | || |||||||| || |||||||||||| | |||||| Sbjct 19401954 TCATCTGGGAGATTGGGGCACGCAATTTGGTATGCTTATTGCA 19401912 Score = 96.9 bits (106), Expect = 2e-14 Identities = 127/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 |||||||||| ||||| | ||| || || ||||| ||||| ||||| | ||| || Sbjct 5413978 TTATAATCAGAAAGAGTACGTCCATCCTCCAGCTGCTTGCCAGCGAAAATCAAACGCTGC 5413919 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 ||||| || ||||| ||||||||||| |||||||| || || ||||| |||||| Sbjct 5413918 TGATCTGGGGGAATACCTTCCTTGTCCTGAATCTTGGCCTTAACGTTCTCAATGGTATCA 5413859 Query 480714 GTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | | | | || ||||| || || || || || | ||||| ||||| ||||| Sbjct 5413858 GAGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGTCAAGGTCTTGACGAAGATTTG 5413803 Score = 96.9 bits (106), Expect = 2e-14 Identities = 127/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 |||||||||| ||||| | ||| || || ||||| ||||| ||||| | ||| || Sbjct 5414206 TTATAATCAGAAAGAGTACGTCCATCCTCCAGCTGCTTGCCAGCGAAAATCAAACGCTGC 5414147 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 ||||| || ||||| ||||||||||| |||||||| || || ||||| |||||| Sbjct 5414146 TGATCTGGGGGAATACCTTCCTTGTCCTGAATCTTGGCCTTAACGTTCTCAATGGTATCA 5414087 Query 480714 GTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | | | | || ||||| || || || || || | ||||| ||||| ||||| Sbjct 5414086 GAGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGTCAAGGTCTTGACGAAGATTTG 5414031 Score = 89.7 bits (98), Expect = 3e-12 Identities = 126/177 (71%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 480593 ATTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTG 480652 ||| || |||| ||||| | ||| || || ||||| ||||| ||||| | ||| || Sbjct 5414435 ATTGTAGTCAGAAAGAGTACGTCCATCCTCCAGCTGCTTGCCAGCGAAAATCAAACGCTG 5414376 Query 480653 TTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATC 480712 ||||| || ||||| ||||||||||| |||||||| || || ||||| ||||| Sbjct 5414375 CTGATCTGGGGGAATACCTTCCTTGTCCTGAATCTTGGCCTTAACGTTCTCAATGGTATC 5414316 Query 480713 AGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || | | | || ||||| || || || || || | ||||| ||||| ||||| Sbjct 5414315 AGAGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGTCAAGGTCTTGACGAAGATTTG 5414259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268178942630888