Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20busckii_20[refseq_20GCF_5F001277935.1_202015-09-02]
6 sequences; 135,748,557 total letters
Query= NC_020104.1
Length=1021348
Score E
Sequences producing significant alignments: (Bits) Value
seq4 194 1e-43
seq1 118 7e-21
seq5 105 4e-17
>seq4
Length=26871514
Score = 194 bits (214), Expect = 1e-43
Identities = 377/548 (69%), Gaps = 8/548 (1%)
Strand=Plus/Minus
Query 474333 TTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTAG 474392
||||||||||||| || || || ||| ||| || | ||| | || |||| || || |
Sbjct 23615461 TTGGTATTGATTTGGGCACCACCTACTCTTGCGTGGGTGTGTTCCAGCATGGCAAGGTTG 23615402
Query 474393 AAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAAA 474452
| || |||||||| || || |||||| | || |||||||| |||||| | || || || |
Sbjct 23615401 AGATCATTGCCAACGATCAGGGTAATCGTACCACACCATCCTATGTTGCCTTCACGGACA 23615342
Query 474453 CTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACTA 474512
| || | | | ||||| |||||||| || | || | ||| || || | || |
Sbjct 23615341 CGGAGCGTTTGATTGGTGATGCTGCCAAGAACCAGGTGGCAATGAACCCAACCCAAACGA 23615282
Query 474513 TTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGATA 474572
| || ||||| || | | |||||||| || || || ||| | |||| || || || |
Sbjct 23615281 TCTTCGATGCCAAGCGTCTTATTGGTCGCAAATTCGAGGATTCGGCTGTGCAGTCGGACA 23615222
Query 474573 TGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAGCAA--T 474630
|| || ||||| ||| | || | | |||| ||| || || | || || | | |
Sbjct 23615221 TGAAGCACTGGCCCTTTGATGTTGTCAGCGTTGATGGCAAGCCCAAGATTGAGGTTACGT 23615162
Query 474631 ACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAA 474690
||| | | | | || | || | ||| || || | || || || ||||| || ||||
Sbjct 23615161 ACAAGGATGAG-AAGAAGACTTTCTTC-CCCGAGGAGATCTCCTCCATGGTGTTGACCAA 23615104
Query 474691 AATGAAACAAACCG-CGAGCTCATATCTTGGACAAGA-AGTAACTGATGCAGTAATTACT 474748
||||| | |||| |||| | || ||||| ||||| || || |||| || || |||
Sbjct 23615103 GATGAAGGAGACCGCCGAG-GCGTACCTTGG-CAAGACGGTGACAAATGCCGTCATCACT 23615046
Query 474749 GTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCA 474808
|| || || ||||| || || || || ||||| || || |||||||| || | |||||
Sbjct 23615045 GTGCCCGCTTATTTCAACGACTCGCAGCGTCAGGCGACCAAAGATGCTGGTACCATTGCC 23614986
Query 474809 GGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTT 474868
||| | ||||| | |||||||| || || || || || || || |||| ||||||||
Sbjct 23614985 GGTTTGAATGTGCTGCGTATTATCAACGAGCCCACGGCCGCGGCTATTGCCTATGGTCTG 23614926
Query 474869 GATAAGAA 474876
|| |||||
Sbjct 23614925 GACAAGAA 23614918
Score = 132 bits (146), Expect = 3e-25
Identities = 361/551 (66%), Gaps = 4/551 (1%)
Strand=Plus/Plus
Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388
|| ||||||||||| || || || || ||| ||||| | ||| | ||| | || ||
Sbjct 17075539 GCGATTGGTATTGACTTGGGCACCACATACTCATGTGTGGGTGTCTATCAACACGGCAAG 17075598
Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448
|| || || |||||||| ||||| || ||| | |||||||| ||||| | |||||
Sbjct 17075599 GTGGAGATCATTGCCAACGACCAGGGCAATCGCACAACACCCAGCTATGTGGCGTTTACA 17075658
Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAAT 474508
|| | || | | | |||||||| ||||| || | || | ||| ||||| ||
Sbjct 17075659 GATTCGGAGCGTTTGATTGGAGACGCTGCCAAGAACCAGGTGGCAATGAATCCCAGAAAC 17075718
Query 474509 ACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCT 474568
|| | |||||||| || | ||||||| || || | ||| ||| | | |
Sbjct 17075719 ACAGTATTTGATGCAAAGCGCCTGATTGGCCGCAAGTATGACGATCCTAAGATTGCGGAG 17075778
Query 474569 GATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAG--AAG 474626
|| || || ||||| || || ||| | | || || || || || | || | |
Sbjct 17075779 GACATCAAGCACTGGCCCTTCAAAGTGGTTAGTGAAGGAGGCAAGCCTAAGATTGGCATC 17075838
Query 474627 CAATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAG 474686
||| || | || ||| || | ||| |||| ||| | | || ||||| | |
Sbjct 17075839 GAATTCAAG--GGAGAACAGAAGCGCTTTGCACCTGAAGAGGTCAGCTCGATGGTGCTGG 17075896
Query 474687 CCAAAATGAAACAAACCGCGAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATTA 474746
|| ||||| | || || | ||||| || ||| | || || ||||| || |
Sbjct 17075897 TGAAGATGAAGGAGACGGCTGAAGCGTATCTGGGTCAAAGCATCACAGACGCAGTCATCA 17075956
Query 474747 CTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTG 474806
| || || || ||||| ||||| |||||| | || |||||||| || || || ||||
Sbjct 17075957 CAGTGCCCGCCTATTTCAATGACTCTCAAAGGCAGGCAACTAAGGAAGCCGGTCACATTG 17076016
Query 474807 CAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTC 474866
| || ||||| ||| | | || || || || || || || || ||||| |||||||| |
Sbjct 17076017 CCGGGCTTAACGTTCTGAGAATCATCAACGAGCCTACTGCGGCGGCACTGGCTTATGGAC 17076076
Query 474867 TTGATAAGAAT 474877
| |||||||||
Sbjct 17076077 TAGATAAGAAT 17076087
Score = 122 bits (134), Expect = 6e-22
Identities = 257/377 (68%), Gaps = 10/377 (3%)
Strand=Plus/Plus
Query 474506 AATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAA 474565
||||| | |||||||| || | |||||||| || || ||||||||| | | | |
Sbjct 21271314 AATACGGTCTTTGATGCAAAGCGTTTGATTGGACGCAAGTTTGATGATCCGAAAATAAAG 21271373
Query 474566 TCTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAA 474625
|| | |||||||| ||||||||| | | | ||| || || || | || |||
Sbjct 21271374 GAGGACCTCAAGCATTGGCCCTTTAAGGTGGTCAGCGATGGCGGCAAGCCCAAGATCGAA 21271433
Query 474626 GC--AATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTT 474683
| | | || | || ||| || | ||| |||| || | ||| || ||||| |
Sbjct 21271434 GTGGAGTTCAAG--GGCGAACGCAAGCGCTTTGCACCCGAGGAGATTAGCTCCATGGTGT 21271491
Query 474684 TAGCCAAAATGAAACAAACCGC-GAGCTCATATCTTGGA--CAAGAAGTAACTGATGCAG 474740
| |||||||| | || || ||| | ||||| || |||| || | ||||| |
Sbjct 21271492 TGACCAAAATGCGTGAGACTGCCGAGGTG-TATCTGGGTGCCAAG--GTGAAGGATGCGG 21271548
Query 474741 TAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAA 474800
| ||||| || ||||| ||||| ||||| || |||||||| || || |||||||||||
Sbjct 21271549 TGATTACGGTGCCAGCCTATTTCAATGACTCGCAACGTCAGGCCACCAAAGATGCGGGCT 21271608
Query 474801 GAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTT 474860
||||| || | ||||| | || ||||| ||||| |||||||| || || | || |
Sbjct 21271609 CCATTGCGGGCTTGAATGTGCTGCGCATTATCAATGAGCCAACAGCGGCTGCCTTGGCCT 21271668
Query 474861 ATGGTCTTGATAAGAAT 474877
|||| || || ||||||
Sbjct 21271669 ATGGCCTGGACAAGAAT 21271685
>seq1
Length=33300182
Score = 118 bits (130), Expect = 7e-21
Identities = 161/221 (73%), Gaps = 4/221 (2%)
Strand=Plus/Minus
Query 480551 ACGAAGACGGAGTACAAGATGAAGTGT--ACTTTCTTTAGAAACATTATAATCAGCTAGA 480608
||| || ||||| || | || || || ||| |||| ||| |||||| || | |||
Sbjct 5269463 ACGGAGGCGGAGCACCAAGTGCAGGGTGGACTC-CTTTTGAAT-ATTATAGTCGGACAGA 5269406
Query 480609 GTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATT 480668
|| | |||||| | |||||| ||||| || || | |||||||||||| |||||||||
Sbjct 5269405 GTACGACCATCTTCCAATTGCTTGCCAGCGAAGATTAAACGTTGTTGATCTGGAGGAATT 5269346
Query 480669 CCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCA 480728
||||| ||||| |||||||| ||||||| ||| |||||||| | || |||
Sbjct 5269345 CCTTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTATCCGATGGTTCGACCTCA 5269286
Query 480729 AGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
|| || || || ||||| || || || |||||||| || ||
Sbjct 5269285 AGAGTGATGGTCTTACCCGTAAGGGTTTTAACGAAGATCTG 5269245
>seq5
Length=23724088
Score = 105 bits (116), Expect = 4e-17
Identities = 131/177 (74%), Gaps = 2/177 (1%)
Strand=Plus/Minus
Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653
|||||||||| ||||| | ||| ||||| ||||| ||||||||||| | ||| ||
Sbjct 5413750 TTATAATCAGAAAGAGTACGTCCATCCTCAAGCTGCTTGCCAGCAAAAATCAAACGCTGC 5413691
Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713
|| || || ||||| || |||||||| |||||||| |||||| ||||| ||||||
Sbjct 5413690 TGGTCTGGGGGAATACCCTCCTTGTCCTGAATCTTGGCCTTGACATTCTCAATGGTATCA 5413631
Query 480714 G-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
| | | || || ||| ||| || || || || || | ||| || |||||||| ||
Sbjct 5413630 GAAGGCTCAACTTCCAA-GGTGATTGTCTTGCCAGTTAAAGTTTTGACGAAAATCTG 5413575
Score = 98.7 bits (108), Expect = 6e-15
Identities = 121/163 (74%), Gaps = 2/163 (1%)
Strand=Plus/Minus
Query 817100 GATTTTTCATCTCCAAATATTGCAAAGGAAATGCATATTGGACACTTGAGATCTACAATA 817159
|| ||||| || ||||| || |||||| |||||||| ||||||| ||| | ||||| ||
Sbjct 19402073 GACTTTTCGTCGCCAAACATCGCAAAGCAAATGCATGTTGGACATTTGCGTTCTACCATT 19402014
Query 817160 ATTGGTGAATCTCTTTGTAGAATATATGAATTTTGTGGATG-TGAAGTACAAAGAATAAA 817218
|||||||| || |||| | | ||| || | || | ||| || | | |||||
Sbjct 19402013 ATTGGTGAGTCCATTTGCCGCCTGCTTGAGTTCT-TGCAGCATGATGTTATACGCATAAA 19401955
Query 817219 TCATATTGGTGATTGGGGAACACAATTTGGTATGTTAATTGCA 817261
|||| | || |||||||| || |||||||||||| | ||||||
Sbjct 19401954 TCATCTGGGAGATTGGGGCACGCAATTTGGTATGCTTATTGCA 19401912
Score = 96.9 bits (106), Expect = 2e-14
Identities = 127/176 (72%), Gaps = 0/176 (0%)
Strand=Plus/Minus
Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653
|||||||||| ||||| | ||| || || ||||| ||||| ||||| | ||| ||
Sbjct 5413978 TTATAATCAGAAAGAGTACGTCCATCCTCCAGCTGCTTGCCAGCGAAAATCAAACGCTGC 5413919
Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713
||||| || ||||| ||||||||||| |||||||| || || ||||| ||||||
Sbjct 5413918 TGATCTGGGGGAATACCTTCCTTGTCCTGAATCTTGGCCTTAACGTTCTCAATGGTATCA 5413859
Query 480714 GTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
| | | | || ||||| || || || || || | ||||| ||||| |||||
Sbjct 5413858 GAGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGTCAAGGTCTTGACGAAGATTTG 5413803
Score = 96.9 bits (106), Expect = 2e-14
Identities = 127/176 (72%), Gaps = 0/176 (0%)
Strand=Plus/Minus
Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653
|||||||||| ||||| | ||| || || ||||| ||||| ||||| | ||| ||
Sbjct 5414206 TTATAATCAGAAAGAGTACGTCCATCCTCCAGCTGCTTGCCAGCGAAAATCAAACGCTGC 5414147
Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713
||||| || ||||| ||||||||||| |||||||| || || ||||| ||||||
Sbjct 5414146 TGATCTGGGGGAATACCTTCCTTGTCCTGAATCTTGGCCTTAACGTTCTCAATGGTATCA 5414087
Query 480714 GTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
| | | | || ||||| || || || || || | ||||| ||||| |||||
Sbjct 5414086 GAGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGTCAAGGTCTTGACGAAGATTTG 5414031
Score = 89.7 bits (98), Expect = 3e-12
Identities = 126/177 (71%), Gaps = 0/177 (0%)
Strand=Plus/Minus
Query 480593 ATTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTG 480652
||| || |||| ||||| | ||| || || ||||| ||||| ||||| | ||| ||
Sbjct 5414435 ATTGTAGTCAGAAAGAGTACGTCCATCCTCCAGCTGCTTGCCAGCGAAAATCAAACGCTG 5414376
Query 480653 TTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATC 480712
||||| || ||||| ||||||||||| |||||||| || || ||||| |||||
Sbjct 5414375 CTGATCTGGGGGAATACCTTCCTTGTCCTGAATCTTGGCCTTAACGTTCTCAATGGTATC 5414316
Query 480713 AGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
|| | | | || ||||| || || || || || | ||||| ||||| |||||
Sbjct 5414315 AGAGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGTCAAGGTCTTGACGAAGATTTG 5414259
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3268178942630888
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