Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20busckii_20[refseq_20GCF_5F001277935.1_202015-09-02] 6 sequences; 135,748,557 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq1 104 3e-17 >seq1 Length=33300182 Score = 104 bits (114), Expect = 3e-17 Identities = 177/253 (70%), Gaps = 3/253 (1%) Strand=Plus/Plus Query 14352 CCCA-TATGGCGGATGGTCTCAAGCCTTCACAGAGGAAAGTGATGTATGCTTGCTTCCAT 14410 |||| ||||| |||||| || |||||| |||| | || || |||| | |||||||| | Sbjct 19593657 CCCAGTATGGTGGATGGCCTTAAGCCTGGACAGCGCAAGGTTATGTTTACTTGCTTCAAG 19593716 Query 14411 AAGAATCTCAAGGATGAAATGAAGGTGGCACAACTGGCGGCATATGTCGCGGACAAGTCT 14470 || ||| ||| | || ||||||||||| | | | ||| || || ||||| Sbjct 19593717 CGTAACGACAAACGTGAGGTTAAAGTGGCACAACTCTCTGGCTCTGTGGCAGAGCAGTCT 19593776 Query 14471 GCGTACCACCATGGTGAAGTATCCTTAGCGGA-CACGATTGTTAAGTTGGCAAACGACTA 14529 || || || || || || || || || || || || ||||| || |||||| | ||| Sbjct 19593777 GCCTATCATCACGGCGAGGTGTCATT-GCAGATGACTATTGTCAATTTGGCACAGAACTT 19593835 Query 14530 CACGGGTTCAAACAACATTAACCTTCTTGAACCGTGTGGTCAATTTGGTACGCGTCTCAT 14589 ||| || ||||| ||||| | || || || ||||||| || ||||| ||||| | Sbjct 19593836 TGTGGGCTCGAACAATATTAATTTACTAGAGCCCCGTGGTCAGTTCGGTACACGTCTAAC 19593895 Query 14590 GGGTGGTAAGGAT 14602 ||||| |||||| Sbjct 19593896 AGGTGGCAAGGAT 19593908 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596569555257280