Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20busckii_20[refseq_20GCF_5F001277935.1_202015-09-02] 6 sequences; 135,748,557 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq2 109 8e-19 >seq2 Length=22510139 Score = 109 bits (120), Expect = 8e-19 Identities = 350/542 (65%), Gaps = 3/542 (1%) Strand=Plus/Minus Query 18153 ATAAACACG-CAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAAC 18211 || |||||| |||| ||| ||| || || ||||| | || |||| || || || Sbjct 3319019 ATCAACACGGCAAAGTCACAGTGCAAGCCCTCATCGCGCGAGATTAGCTCATTGGAGAAG 3318960 Query 18212 GTTAACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAA 18271 || || || ||||| | || | || |||||||| || || || ||||| || | | Sbjct 3318959 GTCAAGCCAGGCATGAGGCCACGCTTCTTTAGCCAGAAAATGGAGGCGAAGCTGCCGCTA 3318900 Query 18272 AAGAATATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTG 18331 ||||| || ||||||||| ||||| || || | | || |||| || ||| Sbjct 3318899 AAGAAAATGCCCTCAACGGCGGCGAAGGCAATAATCCGCTCGCCAAAGTTGGCAGCCTTG 3318840 Query 18332 CTCAGTATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATA 18391 ||||||| | |||||| || | | | | ||| || | || || Sbjct 3318839 GAGGATATCCATGATAATGCCCAGTCAGCCTTGCGCTTCACAGCCGGCATTGTTTCAATT 3318780 Query 18392 GCATTAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAA 18451 ||||| |||| || || | || || ||| | ||| || || || | || | | Sbjct 3318779 GCATTGAACAGATAGTCACGCTGTTGGGGATCACGGACATACGTATCAATGAGCACACTA 3318720 Query 18452 TACATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCG 18511 ||||| || || || | | ||||| || ||||| || | |||||| | | ||||| Sbjct 3318719 TACATCTCCGAGTGGACATTCTCCATCGCAATCTGGAATCCATAAAAGCAGCGTGCCTCT 3318660 Query 18512 GGATAT-TGAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGC 18570 | ||| || | || | ||| | || |||| |||||||| || || || |||| Sbjct 3318659 GT-TATCTGCACTTCTTGACTAAAGCGCTCAACCAGGTTCTCATTGACAATGCCATCAGA 3318601 Query 18571 AGATGCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGATTGTT 18630 | ||||||||||||||| |||| | ||| || || ||||| || | ||| | Sbjct 3318600 GGCTGCGAAAAATGCCAACACATGTGAAATAAAGTGACGCTCATTGTCTGTAAGACGTTC 3318541 Query 18631 CCATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGC 18690 ||| ||| || || || || ||||| ||||||||| |||||||| || | |||||| Sbjct 3318540 CCAGTCAGTCATGTCCTTAGACAGATCCACTTCTTCCACAGTCCAAAATGAGGCTTCGGC 3318481 Query 18691 CT 18692 || Sbjct 3318480 CT 3318479 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731871945109600