Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20busckii_20[refseq_20GCF_5F001277935.1_202015-09-02] 6 sequences; 135,748,557 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq1 125 1e-23 seq2 93.3 8e-14 seq5 87.8 4e-12 >seq1 Length=33300182 Score = 125 bits (138), Expect = 1e-23 Identities = 145/194 (75%), Gaps = 1/194 (1%) Strand=Plus/Minus Query 192347 CTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGA 192406 |||| || |||||||| || || | || || |||| |||||||| || ||||| |||| Sbjct 5269430 CTTTTGA-ATATTATAGTCGGACAGAGTACGACCATCTTCCAATTGCTTGCCAGCGAAGA 5269372 Query 192407 TTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAG 192466 |||| | |||||||| || || ||||||||||| || || || || ||| ||||| Sbjct 5269371 TTAAACGTTGTTGATCTGGAGGAATTCCTTCTTTGTCCTGAATCTTGGCTTTGACATTTT 5269312 Query 192467 TTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAA 192526 |||| ||| || | ||| || || ||||| ||||| ||||| || | ||||||| | Sbjct 5269311 CGATAGTATCCGATGGTTCGACCTCAAGAGTGATGGTCTTACCCGTAAGGGTTTTAACGA 5269252 Query 192527 ATATCTGCATTTTA 192540 | |||||||| ||| Sbjct 5269251 AGATCTGCATCTTA 5269238 >seq2 Length=22510139 Score = 93.3 bits (102), Expect = 8e-14 Identities = 166/240 (69%), Gaps = 2/240 (1%) Strand=Plus/Minus Query 50117 ATACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTCTTGCTTC 50176 |||||| || || || ||| ||||| || || || ||| |||||| | ||| || Sbjct 3318720 ATACATCTCCGAGTGGACATTCTCCATCGCAATCTGGAATCCATAAAAGCAGCGTGCCTC 3318661 Query 50177 TGAATACTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGA 50236 || ||| ||||| | || || ||||| | |||||| ||||| |||||||| Sbjct 3318660 TGTTATCTGCACTTCTTGACTAAAGCGCTCAACCAGGTTCTCATTGACAATGCCATCAGA 3318601 Query 50237 TGCTGCGAAGAATGCTAAAACGTATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTC 50296 |||||||| ||||| || || | | |||||| || ||||| ||| | | | ||| Sbjct 3318600 GGCTGCGAAAAATGCCAACACATGTGAAATAAAGTGACGCTCATTGTCTGTAAGACGTTC 3318541 Query 50297 CCAAG-ATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAATGATGCTACGG 50355 ||| | ||| | || || || | ||| |||||||| | ||||||||||| ||| ||| Sbjct 3318540 CCAGTCAGTCATG-TCCTTAGACAGATCCACTTCTTCCACAGTCCAAAATGAGGCTTCGG 3318482 >seq5 Length=23724088 Score = 87.8 bits (96), Expect = 4e-12 Identities = 159/233 (68%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | ||||| || || || || | || | ||| || ||| ||||||||| Sbjct 5413801 ATGCCACCACGCAGACGCAACACCAAGTGGAGGGTTGACTCCTTCTGGATGTTATAATCA 5413742 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || ||| |||| || | || || |||||||| || || | ||| || || || Sbjct 5413741 GAAAGAGTACGTCCATCCTCAAGCTGCTTGCCAGCAAAAATCAAACGCTGCTGGTCTGGG 5413682 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || || || || || || || ||||| || | ||| || | || Sbjct 5413681 GGAATACCCTCCTTGTCCTGAATCTTGGCCTTGACATTCTCAATGGTATCAGAAGGCTCA 5413622 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 ||||| | || || || || |||||||| ||||| | || |||||||| || Sbjct 5413621 ACTTCCAAGGTGATTGTCTTGCCAGTTAAAGTTTTGACGAAAATCTGCATCTT 5413569 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984479924318100