Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20busckii_20[refseq_20GCF_5F001277935.1_202015-09-02] 6 sequences; 135,748,557 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq5 96.9 4e-14 seq2 95.1 1e-13 >seq5 Length=23724088 Score = 96.9 bits (106), Expect = 4e-14 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 507077 TCGGGCAAGCCCACCAAGGGCCTCGTGGAGCGGTTCAAGGGCAAGGAGGGTAGGATCCGC 507136 |||||||||||| |||| | || || ||| |||||||||||||||| | || || Sbjct 1427412 TCGGGCAAGCCCTTGAAGGCCATCAAGGCGCGTCTCAAGGGCAAGGAGGGACGCATTCGT 1427471 Query 507137 GGCAATTGCATGGGCAAGCGCGTCAACTTTACCGCGCGCGCCGTCATCAGCCCCGACCCC 507196 ||||| | ||||| || || || |||| ||||||| | ||||||| ||||| ||| Sbjct 1427472 GGCAACTTGATGGGTAAACGTGTGGACTTCTCCGCGCGTACTGTCATCACACCCGATCCC 1427531 Query 507197 GAGATCGACATTGACGAGGTGGGCGTGCCCTATGAGATCGTCAAGACGCTCACCTTTCCC 507256 | | |||||| ||||||||||||| || | ||| | ||||||||| Sbjct 1427532 AATTTGCGTATTGACCAGGTGGGCGTGCCGCGCTCCATTGCACAGAATTTAACCTTTCCC 1427591 Query 507257 GAGCGCGTGACGCCCCTTACCAT 507279 |||| ||||| ||| | | ||| Sbjct 1427592 GAGCTGGTGACTCCCTTCAACAT 1427614 >seq2 Length=22510139 Score = 95.1 bits (104), Expect = 1e-13 Identities = 122/168 (73%), Gaps = 3/168 (2%) Strand=Plus/Minus Query 869156 ACGGCAAAGAGGGCACTATGCGAACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCG 869215 ||||||||| ||| ||| | || || ||||| ||| | || ||| |||| Sbjct 3319013 ACGGCAAAGT---CACAGTGCAAGCCCTCATCGCGCGAGATTAGCTCATTGGAGAAGGTC 3318957 Query 869216 AGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAA 869275 | ||| ||||||||||| |||||||| ||||| || |||| | ||| ||||| || Sbjct 3318956 AAGCCAGGCATGAGGCCACGCTTCTTTAGCCAGAAAATGGAGGCGAAGCTGCCGCTAAAG 3318897 Query 869276 AAGATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAGGTG 869323 || |||||||| |||||||| ||| | || | ||||||| ||||| || Sbjct 3318896 AAAATGCCCTCAACGGCGGCGAAGGCAATAATCCGCTCGCCAAAGTTG 3318849 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107138707611902