Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20busckii_20[refseq_20GCF_5F001277935.1_202015-09-02] 6 sequences; 135,748,557 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq5 100 5e-15 seq2 95.1 2e-13 >seq5 Length=23724088 Score = 100 bits (110), Expect = 5e-15 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 429032 GTCGGGCAAGCCCACCAAGGGCGTCGTGGAGCGATTCAAGGGCAAGGAGGGCCGGATCCG 429091 ||||||||||||| |||| | || || ||| |||||||||||||||| || || || Sbjct 1427411 GTCGGGCAAGCCCTTGAAGGCCATCAAGGCGCGTCTCAAGGGCAAGGAGGGACGCATTCG 1427470 Query 429092 CGGCAATTGCATGGGCAAGCGCGTCAACTTTACGGCGCGCGCCGTCATCAGTCCCGACCC 429151 ||||| | ||||| || || || |||| | ||||| | ||||||| ||||| || Sbjct 1427471 TGGCAACTTGATGGGTAAACGTGTGGACTTCTCCGCGCGTACTGTCATCACACCCGATCC 1427530 Query 429152 CGAAATCGACATTGACGAGGTGGGCGTGCCCTATGAGATCGTCAAGACGCTCACCTTTCC 429211 | | | |||||| ||||||||||||| || | ||| | |||||||| Sbjct 1427531 CAATTTGCGTATTGACCAGGTGGGCGTGCCGCGCTCCATTGCACAGAATTTAACCTTTCC 1427590 Query 429212 CGAGCGCGTGACGCCCTT 429229 ||||| ||||| ||||| Sbjct 1427591 CGAGCTGGTGACTCCCTT 1427608 >seq2 Length=22510139 Score = 95.1 bits (104), Expect = 2e-13 Identities = 100/132 (76%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 2035625 CACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTT 2035684 ||| ||||||||| | ||| | || ||||| || || || |||||| ||| || || | Sbjct 19548262 CACACTCTTTGAGCTCATCTTGGCGGCCAATTATCTGGATATCAAGGGCCTGCTGGAGCT 19548203 Query 2035685 GGGGTGCAAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGAC 2035744 ||||||||||||||||| | || |||||||| | |||||||| || |||||||| Sbjct 19548202 AACATGCAAGACCGTGGCCAATATGATTAAGGGCAAAACTCCCGAGGATATACGCAAGAC 19548143 Query 2035745 CTTTAACATCAA 2035756 || ||||| || Sbjct 19548142 GTTCAACATTAA 19548131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916245761752634