Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20busckii_20[refseq_20GCF_5F001277935.1_202015-09-02]
6 sequences; 135,748,557 total letters
Query= NC_022646.1
Length=101818
Score E
Sequences producing significant alignments: (Bits) Value
seq3 138 7e-28
seq1 120 2e-22
seq5 82.4 5e-11
>seq3
Length=28180402
Score = 138 bits (152), Expect = 7e-28
Identities = 174/237 (73%), Gaps = 4/237 (2%)
Strand=Plus/Plus
Query 34743 AATCATTTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTAT 34802
|| ||| ||| || | || | || |||| ||||| ||| ||||||||||||||| |
Sbjct 22368557 AAGCATGTCCACCACGCAGACGGAGAACCAAGTGAAGGGTAGACTCCTTCTGAATGTTGT 22368616
Query 34803 AGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGT 34862
|||| || || |||| |||| |||| ||||| |||||||||||||| || |||||||
Sbjct 22368617 AGTCGGACAGAGTGCGTCCATCCTCCAACTGCTTGCCGGCGAAGATCAGACGCTGCTGGT 22368676
Query 34863 CTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATT 34920
|| | || | ||||||||||| | || || || || || || || | || |
Sbjct 22368677 CTGGGGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTCAC--ATTCTCAATGGTGTCGCT 22368734
Query 34921 GGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
|| ||| || || | ||| |||||||| || || |||||||| || |||||||||||
Sbjct 22368735 GGGCTCAACCTCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 22368791
Score = 132 bits (146), Expect = 3e-26
Identities = 159/214 (74%), Gaps = 4/214 (2%)
Strand=Plus/Plus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
|| |||| ||| | ||| ||||||||||||||| ||||| || || |||| ||||
Sbjct 22368808 AGCACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCATCC 22368867
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|||| ||||| |||||||||||||| || ||||||||| | || | |||||||||||
Sbjct 22368868 TCCAACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCT 22368927
Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943
| || || || || || || || | || ||| ||| || || | ||| ||||
Sbjct 22368928 TGGATCTTGGCCTTCAC--ATTCTCAATGGTGTCGCTGGGCTCAACCTCCAAGGTGATGG 22368985
Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
|||| || || |||||||| || |||||||||||
Sbjct 22368986 TCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 22369019
Score = 132 bits (146), Expect = 3e-26
Identities = 159/214 (74%), Gaps = 4/214 (2%)
Strand=Plus/Plus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
|| |||| ||| | ||| ||||||||||||||| ||||| || || |||| ||||
Sbjct 22369036 AGCACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCATCC 22369095
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|||| ||||| |||||||||||||| || ||||||||| | || | |||||||||||
Sbjct 22369096 TCCAACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCT 22369155
Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943
| || || || || || || || | || ||| ||| || || | ||| ||||
Sbjct 22369156 TGGATCTTGGCCTTCAC--ATTCTCAATGGTGTCGCTGGGCTCAACCTCCAAGGTGATGG 22369213
Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
|||| || || |||||||| || |||||||||||
Sbjct 22369214 TCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 22369247
Score = 132 bits (146), Expect = 3e-26
Identities = 159/214 (74%), Gaps = 4/214 (2%)
Strand=Plus/Plus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
|| |||| ||| | ||| ||||||||||||||| ||||| || || |||| ||||
Sbjct 22369264 AGCACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCATCC 22369323
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|||| ||||| |||||||||||||| || ||||||||| | || | |||||||||||
Sbjct 22369324 TCCAACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCT 22369383
Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943
| || || || || || || || | || ||| ||| || || | ||| ||||
Sbjct 22369384 TGGATCTTGGCCTTCAC--ATTCTCAATGGTGTCGCTGGGCTCAACCTCCAAGGTGATGG 22369441
Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
|||| || || |||||||| || |||||||||||
Sbjct 22369442 TCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 22369475
Score = 132 bits (146), Expect = 3e-26
Identities = 159/214 (74%), Gaps = 4/214 (2%)
Strand=Plus/Plus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
|| |||| ||| | ||| ||||||||||||||| ||||| || || |||| ||||
Sbjct 22369492 AGCACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCATCC 22369551
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|||| ||||| |||||||||||||| || ||||||||| | || | |||||||||||
Sbjct 22369552 TCCAACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCT 22369611
Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943
| || || || || || || || | || ||| ||| || || | ||| ||||
Sbjct 22369612 TGGATCTTGGCCTTCAC--ATTCTCAATGGTGTCGCTGGGCTCAACCTCCAAGGTGATGG 22369669
Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
|||| || || |||||||| || |||||||||||
Sbjct 22369670 TCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 22369703
Score = 132 bits (146), Expect = 3e-26
Identities = 159/214 (74%), Gaps = 4/214 (2%)
Strand=Plus/Plus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
|| |||| ||| | ||| ||||||||||||||| ||||| || || |||| ||||
Sbjct 22369720 AGCACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCATCC 22369779
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|||| ||||| |||||||||||||| || ||||||||| | || | |||||||||||
Sbjct 22369780 TCCAACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCT 22369839
Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943
| || || || || || || || | || ||| ||| || || | ||| ||||
Sbjct 22369840 TGGATCTTGGCCTTCAC--ATTCTCAATGGTGTCGCTGGGCTCAACCTCCAAGGTGATGG 22369897
Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
|||| || || |||||||| || |||||||||||
Sbjct 22369898 TCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 22369931
Score = 131 bits (144), Expect = 1e-25
Identities = 159/215 (74%), Gaps = 4/215 (2%)
Strand=Plus/Plus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
|| |||| ||| | ||| ||||||||||||||| ||||| || || |||| ||||
Sbjct 22369948 AGCACCAAGTGGAGGGTTGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCATCC 22370007
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|||| ||||| |||||||||||||| || ||||||||| | || | |||||||||||
Sbjct 22370008 TCCAACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCT 22370067
Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943
| || || || || || || || | || ||| ||| || || | ||| ||||
Sbjct 22370068 TGGATCTTGGCCTTCAC--ATTCTCAATGGTGTCGCTGGGCTCAACCTCCAAGGTGATGG 22370125
Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978
|||| || || | ||||| |||||||||||||||
Sbjct 22370126 TCTTGCCAGTCAATGTCTTCACAAAGATCTGCATG 22370160
>seq1
Length=33300182
Score = 120 bits (132), Expect = 2e-22
Identities = 144/194 (74%), Gaps = 4/194 (2%)
Strand=Plus/Plus
Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845
||||||||| ||||| ||||| || || | || |||| ||||| ||||| ||||||||
Sbjct 90693 CTCCTTCTGGATGTTGTAGTCGGACAGAGTACGGCCATCTTCCAGCTGCTTGCCGGCGAA 90752
Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905
||||| || ||||| ||| | || | ||||| ||||| | || || ||||| |
Sbjct 90753 GATCAAACGCTGCTGATCTGGGGGAATTCCCTCTTTGTCTTGGATCTTGGCCTTGAC--A 90810
Query 34906 TGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963
| || || | ||| || |||||| || | ||| |||||||| || |||||||| ||
Sbjct 90811 TTCTCGATGGTGTCAGAGGGCTCGACCTCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTC 90870
Query 34964 ACAAAGATCTGCAT 34977
|||||||| |||||
Sbjct 90871 ACAAAGATTTGCAT 90884
Score = 120 bits (132), Expect = 2e-22
Identities = 144/194 (74%), Gaps = 4/194 (2%)
Strand=Plus/Minus
Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845
||||||||| ||||| ||||| || || | || |||| ||||| ||||| ||||||||
Sbjct 2542919 CTCCTTCTGGATGTTGTAGTCGGACAGAGTACGGCCATCTTCCAGCTGCTTGCCGGCGAA 2542860
Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905
||||| || ||||| ||| | || | ||||| ||||| | || || ||||| |
Sbjct 2542859 GATCAAACGCTGCTGATCTGGGGGAATTCCCTCTTTGTCTTGGATCTTGGCCTTGAC--A 2542802
Query 34906 TGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963
| || || | ||| || |||||| || | ||| |||||||| || |||||||| ||
Sbjct 2542801 TTCTCGATGGTGTCAGAGGGCTCGACCTCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTC 2542742
Query 34964 ACAAAGATCTGCAT 34977
|||||||| |||||
Sbjct 2542741 ACAAAGATTTGCAT 2542728
Score = 111 bits (122), Expect = 1e-19
Identities = 154/213 (72%), Gaps = 2/213 (1%)
Strand=Plus/Minus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
|| |||| ||| | |||| |||||| ||||| |||||||| || || | || ||||
Sbjct 5269453 AGCACCAAGTGCAGGGTGGACTCCTTTTGAATATTATAGTCGGACAGAGTACGACCATCT 5269394
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|||| |||||| || |||||||| | ||||| || ||| | || | || || |||||
Sbjct 5269393 TCCAATTGCTTGCCAGCGAAGATTAAACGTTGTTGATCTGGAGGAATTCCTTCTTTGTCC 5269334
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCG-ATTCATTGGCCTCGACATCAACGGTTATGGT 34944
| || || |||||| | | || | || | ||| ||||| |||| || |||||
Sbjct 5269333 TGAATCTTGGCTTTGACATTTTCGATAGTATCCGATGGT-TCGACCTCAAGAGTGATGGT 5269275
Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
||| ||||| ||||| || || |||||||||||
Sbjct 5269274 CTTACCCGTAAGGGTTTTAACGAAGATCTGCAT 5269242
>seq5
Length=23724088
Score = 82.4 bits (90), Expect = 5e-11
Identities = 146/211 (69%), Gaps = 4/211 (2%)
Strand=Plus/Minus
Query 34769 ACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCC 34828
|||| ||| | ||| ||||||||| |||||||| || || || | || |||| ||
Sbjct 5413780 ACCAAGTGGAGGGTTGACTCCTTCTGGATGTTATAATCAGAAAGAGTACGTCCATCCTCA 5413721
Query 34829 AGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTT 34888
|| ||||| || || || |||| || ||||||||| | || | ||||||||||| |
Sbjct 5413720 AGCTGCTTGCCAGCAAAAATCAAACGCTGCTGGTCTGGGGGAATACCCTCCTTGTCCTGA 5413661
Query 34889 ATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCT 34946
|| || ||||| || || || | ||| | ||| || || | ||| || ||||
Sbjct 5413660 ATCTTGGCCTTGAC--ATTCTCAATGGTATCAGAAGGCTCAACTTCCAAGGTGATTGTCT 5413603
Query 34947 TTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
| || || | || || || || ||||||||
Sbjct 5413602 TGCCAGTTAAAGTTTTGACGAAAATCTGCAT 5413572
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 325692776183714
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