Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20busckii_20[refseq_20GCF_5F001277935.1_202015-09-02] 6 sequences; 135,748,557 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq3 138 7e-28 seq1 120 2e-22 seq5 82.4 5e-11 >seq3 Length=28180402 Score = 138 bits (152), Expect = 7e-28 Identities = 174/237 (73%), Gaps = 4/237 (2%) Strand=Plus/Plus Query 34743 AATCATTTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTAT 34802 || ||| ||| || | || | || |||| ||||| ||| ||||||||||||||| | Sbjct 22368557 AAGCATGTCCACCACGCAGACGGAGAACCAAGTGAAGGGTAGACTCCTTCTGAATGTTGT 22368616 Query 34803 AGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGT 34862 |||| || || |||| |||| |||| ||||| |||||||||||||| || ||||||| Sbjct 22368617 AGTCGGACAGAGTGCGTCCATCCTCCAACTGCTTGCCGGCGAAGATCAGACGCTGCTGGT 22368676 Query 34863 CTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATT 34920 || | || | ||||||||||| | || || || || || || || | || | Sbjct 22368677 CTGGGGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTCAC--ATTCTCAATGGTGTCGCT 22368734 Query 34921 GGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || ||| || || | ||| |||||||| || || |||||||| || ||||||||||| Sbjct 22368735 GGGCTCAACCTCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 22368791 Score = 132 bits (146), Expect = 3e-26 Identities = 159/214 (74%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||| | ||| ||||||||||||||| ||||| || || |||| |||| Sbjct 22368808 AGCACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCATCC 22368867 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| ||||| |||||||||||||| || ||||||||| | || | ||||||||||| Sbjct 22368868 TCCAACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCT 22368927 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | || || || || || || || | || ||| ||| || || | ||| |||| Sbjct 22368928 TGGATCTTGGCCTTCAC--ATTCTCAATGGTGTCGCTGGGCTCAACCTCCAAGGTGATGG 22368985 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||| || || |||||||| || ||||||||||| Sbjct 22368986 TCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 22369019 Score = 132 bits (146), Expect = 3e-26 Identities = 159/214 (74%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||| | ||| ||||||||||||||| ||||| || || |||| |||| Sbjct 22369036 AGCACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCATCC 22369095 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| ||||| |||||||||||||| || ||||||||| | || | ||||||||||| Sbjct 22369096 TCCAACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCT 22369155 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | || || || || || || || | || ||| ||| || || | ||| |||| Sbjct 22369156 TGGATCTTGGCCTTCAC--ATTCTCAATGGTGTCGCTGGGCTCAACCTCCAAGGTGATGG 22369213 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||| || || |||||||| || ||||||||||| Sbjct 22369214 TCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 22369247 Score = 132 bits (146), Expect = 3e-26 Identities = 159/214 (74%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||| | ||| ||||||||||||||| ||||| || || |||| |||| Sbjct 22369264 AGCACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCATCC 22369323 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| ||||| |||||||||||||| || ||||||||| | || | ||||||||||| Sbjct 22369324 TCCAACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCT 22369383 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | || || || || || || || | || ||| ||| || || | ||| |||| Sbjct 22369384 TGGATCTTGGCCTTCAC--ATTCTCAATGGTGTCGCTGGGCTCAACCTCCAAGGTGATGG 22369441 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||| || || |||||||| || ||||||||||| Sbjct 22369442 TCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 22369475 Score = 132 bits (146), Expect = 3e-26 Identities = 159/214 (74%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||| | ||| ||||||||||||||| ||||| || || |||| |||| Sbjct 22369492 AGCACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCATCC 22369551 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| ||||| |||||||||||||| || ||||||||| | || | ||||||||||| Sbjct 22369552 TCCAACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCT 22369611 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | || || || || || || || | || ||| ||| || || | ||| |||| Sbjct 22369612 TGGATCTTGGCCTTCAC--ATTCTCAATGGTGTCGCTGGGCTCAACCTCCAAGGTGATGG 22369669 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||| || || |||||||| || ||||||||||| Sbjct 22369670 TCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 22369703 Score = 132 bits (146), Expect = 3e-26 Identities = 159/214 (74%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||| | ||| ||||||||||||||| ||||| || || |||| |||| Sbjct 22369720 AGCACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCATCC 22369779 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| ||||| |||||||||||||| || ||||||||| | || | ||||||||||| Sbjct 22369780 TCCAACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCT 22369839 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | || || || || || || || | || ||| ||| || || | ||| |||| Sbjct 22369840 TGGATCTTGGCCTTCAC--ATTCTCAATGGTGTCGCTGGGCTCAACCTCCAAGGTGATGG 22369897 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||| || || |||||||| || ||||||||||| Sbjct 22369898 TCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 22369931 Score = 131 bits (144), Expect = 1e-25 Identities = 159/215 (74%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||| | ||| ||||||||||||||| ||||| || || |||| |||| Sbjct 22369948 AGCACCAAGTGGAGGGTTGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCATCC 22370007 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| ||||| |||||||||||||| || ||||||||| | || | ||||||||||| Sbjct 22370008 TCCAACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCT 22370067 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | || || || || || || || | || ||| ||| || || | ||| |||| Sbjct 22370068 TGGATCTTGGCCTTCAC--ATTCTCAATGGTGTCGCTGGGCTCAACCTCCAAGGTGATGG 22370125 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 |||| || || | ||||| ||||||||||||||| Sbjct 22370126 TCTTGCCAGTCAATGTCTTCACAAAGATCTGCATG 22370160 >seq1 Length=33300182 Score = 120 bits (132), Expect = 2e-22 Identities = 144/194 (74%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||||||||| ||||| ||||| || || | || |||| ||||| ||||| |||||||| Sbjct 90693 CTCCTTCTGGATGTTGTAGTCGGACAGAGTACGGCCATCTTCCAGCTGCTTGCCGGCGAA 90752 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 ||||| || ||||| ||| | || | ||||| ||||| | || || ||||| | Sbjct 90753 GATCAAACGCTGCTGATCTGGGGGAATTCCCTCTTTGTCTTGGATCTTGGCCTTGAC--A 90810 Query 34906 TGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963 | || || | ||| || |||||| || | ||| |||||||| || |||||||| || Sbjct 90811 TTCTCGATGGTGTCAGAGGGCTCGACCTCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTC 90870 Query 34964 ACAAAGATCTGCAT 34977 |||||||| ||||| Sbjct 90871 ACAAAGATTTGCAT 90884 Score = 120 bits (132), Expect = 2e-22 Identities = 144/194 (74%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||||||||| ||||| ||||| || || | || |||| ||||| ||||| |||||||| Sbjct 2542919 CTCCTTCTGGATGTTGTAGTCGGACAGAGTACGGCCATCTTCCAGCTGCTTGCCGGCGAA 2542860 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 ||||| || ||||| ||| | || | ||||| ||||| | || || ||||| | Sbjct 2542859 GATCAAACGCTGCTGATCTGGGGGAATTCCCTCTTTGTCTTGGATCTTGGCCTTGAC--A 2542802 Query 34906 TGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963 | || || | ||| || |||||| || | ||| |||||||| || |||||||| || Sbjct 2542801 TTCTCGATGGTGTCAGAGGGCTCGACCTCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTC 2542742 Query 34964 ACAAAGATCTGCAT 34977 |||||||| ||||| Sbjct 2542741 ACAAAGATTTGCAT 2542728 Score = 111 bits (122), Expect = 1e-19 Identities = 154/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||| | |||| |||||| ||||| |||||||| || || | || |||| Sbjct 5269453 AGCACCAAGTGCAGGGTGGACTCCTTTTGAATATTATAGTCGGACAGAGTACGACCATCT 5269394 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| |||||| || |||||||| | ||||| || ||| | || | || || ||||| Sbjct 5269393 TCCAATTGCTTGCCAGCGAAGATTAAACGTTGTTGATCTGGAGGAATTCCTTCTTTGTCC 5269334 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCG-ATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | || || |||||| | | || | || | ||| ||||| |||| || ||||| Sbjct 5269333 TGAATCTTGGCTTTGACATTTTCGATAGTATCCGATGGT-TCGACCTCAAGAGTGATGGT 5269275 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||| ||||| ||||| || || ||||||||||| Sbjct 5269274 CTTACCCGTAAGGGTTTTAACGAAGATCTGCAT 5269242 >seq5 Length=23724088 Score = 82.4 bits (90), Expect = 5e-11 Identities = 146/211 (69%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 34769 ACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCC 34828 |||| ||| | ||| ||||||||| |||||||| || || || | || |||| || Sbjct 5413780 ACCAAGTGGAGGGTTGACTCCTTCTGGATGTTATAATCAGAAAGAGTACGTCCATCCTCA 5413721 Query 34829 AGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTT 34888 || ||||| || || || |||| || ||||||||| | || | ||||||||||| | Sbjct 5413720 AGCTGCTTGCCAGCAAAAATCAAACGCTGCTGGTCTGGGGGAATACCCTCCTTGTCCTGA 5413661 Query 34889 ATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCT 34946 || || ||||| || || || | ||| | ||| || || | ||| || |||| Sbjct 5413660 ATCTTGGCCTTGAC--ATTCTCAATGGTATCAGAAGGCTCAACTTCCAAGGTGATTGTCT 5413603 Query 34947 TTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | || || | || || || || |||||||| Sbjct 5413602 TGCCAGTTAAAGTTTTGACGAAAATCTGCAT 5413572 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325692776183714