Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20busckii_20[refseq_20GCF_5F001277935.1_202015-09-02] 6 sequences; 135,748,557 total letters Query= NC_024450.1 Length=204054 Score E Sequences producing significant alignments: (Bits) Value seq5 95.1 2e-14 seq2 95.1 2e-14 seq1 95.1 2e-14 seq3 89.7 7e-13 >seq5 Length=23724088 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||||||||| |||| ||||| | |||||||||||||||| |||| Sbjct 19324665 TCCTCGATAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTC 19324724 Query 8718 CCCGACGAGGAG 8729 |||| || |||| Sbjct 19324725 CCCGTCGGGGAG 19324736 Score = 91.5 bits (100), Expect = 2e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||| ||||| |||| ||||| | |||||||||||||||| |||| Sbjct 19313526 TCCTCGATAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTC 19313585 Query 8718 CCCGACGAGGAGCAG 8732 |||| || |||| || Sbjct 19313586 CCCGTCGGGGAGGAG 19313600 Score = 91.5 bits (100), Expect = 2e-13 Identities = 66/75 (88%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 11727 CAGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGA 11785 ||||||||| |||||||||||| ||||| |||| ||||| | |||||||||||||||| | Sbjct 19324662 CAGTCCTCGATAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAA 19324721 Query 11786 TTCCCCGACGAGGAG 11800 ||||||| || |||| Sbjct 19324722 TTCCCCGTCGGGGAG 19324736 Score = 89.7 bits (98), Expect = 7e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 11729 GTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 11787 ||||||| |||||||||||| ||||| |||| ||||| | |||||||||||||||| ||| Sbjct 19313525 GTCCTCGATAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATT 19313584 Query 11788 CCCCGACGAGGAGG 11801 ||||| || ||||| Sbjct 19313585 CCCCGTCGGGGAGG 19313598 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 139352 ACTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACT 139411 ||||| || |||||| | |||||||||||||||| | |||| |||||||| |||||||| Sbjct 19324737 ACTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 19324678 Query 139412 ATACTAACGAGGA 139424 |||||| |||||| Sbjct 19324677 ATACTATCGAGGA 19324665 >seq2 Length=22510139 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||||||||| |||| ||||| | |||||||||||||||| |||| Sbjct 21407673 TCCTCGATAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTC 21407732 Query 8718 CCCGACGAGGAG 8729 |||| || |||| Sbjct 21407733 CCCGTCGGGGAG 21407744 Score = 89.7 bits (98), Expect = 7e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| || |||||| | |||||||||||||||| | |||| |||||||| ||||||||| Sbjct 21407744 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 21407685 Query 139413 TACTAACGAGGATT 139426 ||||| |||||||| Sbjct 21407684 TACTATCGAGGATT 21407671 Score = 87.8 bits (96), Expect = 2e-12 Identities = 67/78 (86%), Gaps = 1/78 (1%) Strand=Plus/Plus Query 11727 CAGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGA 11785 || |||||| |||||||||||| ||||| |||| ||||| | |||||||||||||||| | Sbjct 21407670 CAATCCTCGATAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAA 21407729 Query 11786 TTCCCCGACGAGGAGGGA 11803 ||||||| || |||| || Sbjct 21407730 TTCCCCGTCGGGGAGAGA 21407747 >seq1 Length=33300182 Score = 95.1 bits (104), Expect = 2e-14 Identities = 69/79 (87%), Gaps = 1/79 (1%) Strand=Plus/Plus Query 8656 ATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGAT 8715 |||||||| |||||||||||| ||||| |||| ||||| | |||||||||||||||| || Sbjct 14569837 ATTCCTCGATAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAAT 14569896 Query 8716 TCCCCGACGAGGAGCAGAG 8734 |||||| || |||| |||| Sbjct 14569897 TCCCCGTCGGGGAG-AGAG 14569914 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||||||||| |||| ||||| | |||||||||||||||| |||| Sbjct 14574723 TCCTCGATAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTC 14574664 Query 8718 CCCGACGAGGAG 8729 |||| || |||| Sbjct 14574663 CCCGTCGGGGAG 14574652 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||||||||| |||| ||||| | |||||||||||||||| |||| Sbjct 17026325 TCCTCGATAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTC 17026266 Query 8718 CCCGACGAGGAG 8729 |||| || |||| Sbjct 17026265 CCCGTCGGGGAG 17026254 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||||||||| |||| ||||| | |||||||||||||||| |||| Sbjct 17026791 TCCTCGATAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTC 17026850 Query 8718 CCCGACGAGGAG 8729 |||| || |||| Sbjct 17026851 CCCGTCGGGGAG 17026862 Score = 93.3 bits (102), Expect = 6e-14 Identities = 68/78 (87%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 11724 ACCCAGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTT 11782 || ||||||||| |||||||||||| ||||| |||| ||||| | ||||||||||||||| Sbjct 12686590 ACACAGTCCTCGATAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTT 12686531 Query 11783 CGATTCCCCGACGAGGAG 11800 | |||||||| || |||| Sbjct 12686530 CAATTCCCCGTCGGGGAG 12686513 Score = 91.5 bits (100), Expect = 2e-13 Identities = 75/90 (83%), Gaps = 1/90 (1%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| || |||||| | |||||||||||||||| | |||| |||||||| ||||||||| Sbjct 17026254 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 17026313 Query 139413 TACTAACGAGGATTTTGGTACACGC-TGAA 139441 ||||| ||||||| ||| ||||| |||| Sbjct 17026314 TACTATCGAGGATGTTGACGCACGCGTGAA 17026343 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 8657 TTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 8716 ||||||| |||||||||||| ||||| |||| ||||| | |||||||||||||||| ||| Sbjct 17027201 TTCCTCGATAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATT 17027142 Query 8717 CCCCGACGAGGAG 8729 ||||| || |||| Sbjct 17027141 CCCCGTCGGGGAG 17027129 Score = 89.7 bits (98), Expect = 7e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||| ||||| |||| ||||| | |||||||||||||||| |||| Sbjct 12686584 TCCTCGATAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTC 12686525 Query 8718 CCCGACGAGGAG 8729 |||| || |||| Sbjct 12686524 CCCGTCGGGGAG 12686513 Score = 89.7 bits (98), Expect = 7e-13 Identities = 68/79 (86%), Gaps = 1/79 (1%) Strand=Plus/Plus Query 11727 CAGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGA 11785 || |||||| |||||||||||| ||||| |||| ||||| | |||||||||||||||| | Sbjct 14569836 CATTCCTCGATAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAA 14569895 Query 11786 TTCCCCGACGAGGAGGGAG 11804 ||||||| || |||| ||| Sbjct 14569896 TTCCCCGTCGGGGAGAGAG 14569914 Score = 89.7 bits (98), Expect = 7e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| || |||||| | |||||||||||||||| | |||| |||||||| ||||||||| Sbjct 17026862 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 17026803 Query 139413 TACTAACGAGGATTTTG 139429 ||||| ||||||| ||| Sbjct 17026802 TACTATCGAGGATGTTG 17026786 Score = 87.8 bits (96), Expect = 2e-12 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| || |||||| | |||||||||||||||| | |||| |||||||| ||||||||| Sbjct 14574652 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 14574711 Query 139413 TACTAACGAGGATTTTGG 139430 ||||| |||||| |||| Sbjct 14574712 TACTATCGAGGACGTTGG 14574729 Score = 87.8 bits (96), Expect = 2e-12 Identities = 64/73 (88%), Gaps = 1/73 (1%) Strand=Plus/Minus Query 11729 GTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 11787 ||||||| |||||||||||| ||||| |||| ||||| | |||||||||||||||| ||| Sbjct 14574724 GTCCTCGATAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATT 14574665 Query 11788 CCCCGACGAGGAG 11800 ||||| || |||| Sbjct 14574664 CCCCGTCGGGGAG 14574652 Score = 86.0 bits (94), Expect = 8e-12 Identities = 63/72 (88%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 |||||| |||||||||||| ||||| |||| ||||| | |||||||||||||||| |||| Sbjct 17026325 TCCTCGATAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTC 17026266 Query 11789 CCCGACGAGGAG 11800 |||| || |||| Sbjct 17026265 CCCGTCGGGGAG 17026254 Score = 86.0 bits (94), Expect = 8e-12 Identities = 63/72 (88%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 |||||| |||||||||||| ||||| |||| ||||| | |||||||||||||||| |||| Sbjct 17026791 TCCTCGATAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTC 17026850 Query 11789 CCCGACGAGGAG 11800 |||| || |||| Sbjct 17026851 CCCGTCGGGGAG 17026862 Score = 86.0 bits (94), Expect = 8e-12 Identities = 63/72 (88%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 |||||| |||||||||||| ||||| |||| ||||| | |||||||||||||||| |||| Sbjct 17027200 TCCTCGATAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTC 17027141 Query 11789 CCCGACGAGGAG 11800 |||| || |||| Sbjct 17027140 CCCGTCGGGGAG 17027129 >seq3 Length=28180402 Score = 89.7 bits (98), Expect = 7e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||| ||||| |||| ||||| | |||||||||||||||| |||| Sbjct 16426389 TCCTCGATAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTC 16426448 Query 8718 CCCGACGAGGAG 8729 |||| || |||| Sbjct 16426449 CCCGTCGGGGAG 16426460 Score = 86.0 bits (94), Expect = 8e-12 Identities = 63/72 (88%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 |||||| |||||||||||| ||||| |||| ||||| | |||||||||||||||| |||| Sbjct 16426389 TCCTCGATAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTC 16426448 Query 11789 CCCGACGAGGAG 11800 |||| || |||| Sbjct 16426449 CCCGTCGGGGAG 16426460 Score = 84.2 bits (92), Expect = 3e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| || |||||| | |||||||||||||||| | |||| |||||||| | ||||||| Sbjct 16426460 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 16426401 Query 139413 TACTAACGAGGATTTT 139428 ||||| ||||||| || Sbjct 16426400 TACTATCGAGGATGTT 16426385 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 652844751036640