Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20busckii_20[refseq_20GCF_5F001277935.1_202015-09-02] 6 sequences; 135,748,557 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq3 141 9e-29 seq5 116 4e-21 seq1 102 8e-17 >seq3 Length=28180402 Score = 141 bits (156), Expect = 9e-29 Identities = 157/207 (76%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | ||| ||||| ||||| || ||||| ||| || ||| | | | ||||| | Sbjct 22368586 AAGTGAAGGGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCA-TCCTCCAA 22368644 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||||||||| ||| | || || ||||||||||| || |||||||| |||||||| ||| Sbjct 22368645 CTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGGAT 22368704 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||| | | ||||| |||||| ||||||| || || | ||||| ||| ||||| Sbjct 22368705 CTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCAACCTCCAAGGTGATGGTCTTGCC 22368764 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||||| || || ||||| |||||||| Sbjct 22368765 AGTCAGGGTCTTCACGAAGATCTGCAT 22368791 Score = 141 bits (156), Expect = 9e-29 Identities = 157/207 (76%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | ||| ||||| ||||| || ||||| ||| || ||| | | | ||||| | Sbjct 22368814 AAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCA-TCCTCCAA 22368872 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||||||||| ||| | || || ||||||||||| || |||||||| |||||||| ||| Sbjct 22368873 CTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGGAT 22368932 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||| | | ||||| |||||| ||||||| || || | ||||| ||| ||||| Sbjct 22368933 CTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCAACCTCCAAGGTGATGGTCTTGCC 22368992 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||||| || || ||||| |||||||| Sbjct 22368993 AGTCAGGGTCTTCACGAAGATCTGCAT 22369019 Score = 141 bits (156), Expect = 9e-29 Identities = 157/207 (76%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | ||| ||||| ||||| || ||||| ||| || ||| | | | ||||| | Sbjct 22369042 AAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCA-TCCTCCAA 22369100 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||||||||| ||| | || || ||||||||||| || |||||||| |||||||| ||| Sbjct 22369101 CTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGGAT 22369160 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||| | | ||||| |||||| ||||||| || || | ||||| ||| ||||| Sbjct 22369161 CTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCAACCTCCAAGGTGATGGTCTTGCC 22369220 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||||| || || ||||| |||||||| Sbjct 22369221 AGTCAGGGTCTTCACGAAGATCTGCAT 22369247 Score = 141 bits (156), Expect = 9e-29 Identities = 157/207 (76%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | ||| ||||| ||||| || ||||| ||| || ||| | | | ||||| | Sbjct 22369270 AAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCA-TCCTCCAA 22369328 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||||||||| ||| | || || ||||||||||| || |||||||| |||||||| ||| Sbjct 22369329 CTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGGAT 22369388 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||| | | ||||| |||||| ||||||| || || | ||||| ||| ||||| Sbjct 22369389 CTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCAACCTCCAAGGTGATGGTCTTGCC 22369448 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||||| || || ||||| |||||||| Sbjct 22369449 AGTCAGGGTCTTCACGAAGATCTGCAT 22369475 Score = 141 bits (156), Expect = 9e-29 Identities = 157/207 (76%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | ||| ||||| ||||| || ||||| ||| || ||| | | | ||||| | Sbjct 22369498 AAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCA-TCCTCCAA 22369556 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||||||||| ||| | || || ||||||||||| || |||||||| |||||||| ||| Sbjct 22369557 CTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGGAT 22369616 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||| | | ||||| |||||| ||||||| || || | ||||| ||| ||||| Sbjct 22369617 CTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCAACCTCCAAGGTGATGGTCTTGCC 22369676 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||||| || || ||||| |||||||| Sbjct 22369677 AGTCAGGGTCTTCACGAAGATCTGCAT 22369703 Score = 141 bits (156), Expect = 9e-29 Identities = 157/207 (76%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | ||| ||||| ||||| || ||||| ||| || ||| | | | ||||| | Sbjct 22369726 AAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCA-TCCTCCAA 22369784 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||||||||| ||| | || || ||||||||||| || |||||||| |||||||| ||| Sbjct 22369785 CTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGGAT 22369844 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||| | | ||||| |||||| ||||||| || || | ||||| ||| ||||| Sbjct 22369845 CTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCAACCTCCAAGGTGATGGTCTTGCC 22369904 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||||| || || ||||| |||||||| Sbjct 22369905 AGTCAGGGTCTTCACGAAGATCTGCAT 22369931 Score = 140 bits (154), Expect = 3e-28 Identities = 164/218 (75%), Gaps = 3/218 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | ||| ||||| ||||| || ||||| ||| || ||| | | | ||||| | Sbjct 22369954 AAGTGGAGGGTTGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCA-TCCTCCAA 22370012 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||||||||| ||| | || || ||||||||||| || |||||||| |||||||| ||| Sbjct 22370013 CTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGGAT 22370072 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||| | | ||||| |||||| ||||||| || || | ||||| ||| ||||| Sbjct 22370073 CTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCAACCTCCAAGGTGATGGTCTTGCC 22370132 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCATGGCTTATTTAT 133671 |||| || || || || |||||||||| || ||||| Sbjct 22370133 AGTCAATGTCTTCACAAAGATCTGCATGG-TTTTTTAT 22370169 >seq5 Length=23724088 Score = 116 bits (128), Expect = 4e-21 Identities = 152/208 (73%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | ||| ||||| ||||| |||||||| || | || | | | ||||| || Sbjct 5414461 AAATGGAGGGTTGACTCCTTCTGGATATTGTAGTCAGAAAGAGTACGTCCA-TCCTCCAG 5414403 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||||||||| ||| |||| | |||||||| || || || || ||||||||||| || Sbjct 5414402 CTGCTTGCCAGCGAAAATCAAACGCTGCTGATCTGGGGGAATACCTTCCTTGTCCTGAAT 5414343 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||| | | ||||| || || | |||||| || |||| ||||| ||| ||||| Sbjct 5414342 CTTGGCCTTAACGTTCTCAATGGTATCAGAGGGCTCAACCTCGAGGGTGATGGTCTTGCC 5414283 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCATG 133661 |||| || || ||||| || |||||| Sbjct 5414282 AGTCAAGGTCTTGACGAAGATTTGCATG 5414255 Score = 107 bits (118), Expect = 2e-18 Identities = 150/208 (72%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | ||| ||||| ||||| || || ||||| | || | | | ||||| || Sbjct 5414005 AAGTGGAGGGTTGACTCCTTCTGGATGTTATAATCAGAAAGAGTACGTCCA-TCCTCCAG 5413947 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||||||||| ||| |||| | |||||||| || || || || ||||||||||| || Sbjct 5413946 CTGCTTGCCAGCGAAAATCAAACGCTGCTGATCTGGGGGAATACCTTCCTTGTCCTGAAT 5413887 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||| | | ||||| || || | |||||| || |||| ||||| ||| ||||| Sbjct 5413886 CTTGGCCTTAACGTTCTCAATGGTATCAGAGGGCTCAACCTCGAGGGTGATGGTCTTGCC 5413827 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCATG 133661 |||| || || ||||| || |||||| Sbjct 5413826 AGTCAAGGTCTTGACGAAGATTTGCATG 5413799 Score = 107 bits (118), Expect = 2e-18 Identities = 150/208 (72%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | ||| ||||| ||||| || || ||||| | || | | | ||||| || Sbjct 5414233 AAGTGGAGGGTTGACTCCTTCTGGATGTTATAATCAGAAAGAGTACGTCCA-TCCTCCAG 5414175 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||||||||| ||| |||| | |||||||| || || || || ||||||||||| || Sbjct 5414174 CTGCTTGCCAGCGAAAATCAAACGCTGCTGATCTGGGGGAATACCTTCCTTGTCCTGAAT 5414115 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||| | | ||||| || || | |||||| || |||| ||||| ||| ||||| Sbjct 5414114 CTTGGCCTTAACGTTCTCAATGGTATCAGAGGGCTCAACCTCGAGGGTGATGGTCTTGCC 5414055 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCATG 133661 |||| || || ||||| || |||||| Sbjct 5414054 AGTCAAGGTCTTGACGAAGATTTGCATG 5414027 Score = 105 bits (116), Expect = 6e-18 Identities = 149/207 (72%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | ||| ||||| ||||| || || ||||| | || | | | ||||| || Sbjct 5413777 AAGTGGAGGGTTGACTCCTTCTGGATGTTATAATCAGAAAGAGTACGTCCA-TCCTCAAG 5413719 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||||||||| || |||| | ||||||||||| || || || || |||||||| || Sbjct 5413718 CTGCTTGCCAGCAAAAATCAAACGCTGCTGGTCTGGGGGAATACCCTCCTTGTCCTGAAT 5413659 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||||| | ||||| || || | ||||| || || | ||||| || ||||| Sbjct 5413658 CTTGGCCTTGACATTCTCAATGGTATCAGAAGGCTCAACTTCCAAGGTGATTGTCTTGCC 5413599 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 || | |||||| |||||||||||||| Sbjct 5413598 AGTTAAAGTTTTGACGAAAATCTGCAT 5413572 >seq1 Length=33300182 Score = 102 bits (112), Expect = 8e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| || ||||| ||| || || | | | || || ||||||||||| Sbjct 90688 GTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTACGGCCA-TCTTCCAGCTGCTTGCC 90746 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || | |||||||| || || || || || || ||||| |||||| ||| Sbjct 90747 GGCGAAGATCAAACGCTGCTGATCTGGGGGAATTCCCTCTTTGTCTTGGATCTTGGCCTT 90806 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||| | ||||| | |||||| || || | ||||| ||| |||||||| || || Sbjct 90807 GACATTCTCGATGGTGTCAGAGGGCTCGACCTCCAAGGTGATGGTCTTGCCGGTGAGGGT 90866 Query 133643 TTTTACGAAAATCTGCAT 133660 ||| || || || ||||| Sbjct 90867 TTTCACAAAGATTTGCAT 90884 Score = 102 bits (112), Expect = 8e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| || ||||| ||| || || | | | || || ||||||||||| Sbjct 2542924 GTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTACGGCCA-TCTTCCAGCTGCTTGCC 2542866 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || | |||||||| || || || || || || ||||| |||||| ||| Sbjct 2542865 GGCGAAGATCAAACGCTGCTGATCTGGGGGAATTCCCTCTTTGTCTTGGATCTTGGCCTT 2542806 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||| | ||||| | |||||| || || | ||||| ||| |||||||| || || Sbjct 2542805 GACATTCTCGATGGTGTCAGAGGGCTCGACCTCCAAGGTGATGGTCTTGCCGGTGAGGGT 2542746 Query 133643 TTTTACGAAAATCTGCAT 133660 ||| || || || ||||| Sbjct 2542745 TTTCACAAAGATTTGCAT 2542728 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483420763743440