Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20busckii_20[refseq_20GCF_5F001277935.1_202015-09-02]
6 sequences; 135,748,557 total letters
Query= NC_025257.1
Length=102759
Score E
Sequences producing significant alignments: (Bits) Value
seq3 120 2e-22
seq1 102 5e-17
seq5 98.7 7e-16
>seq3
Length=28180402
Score = 120 bits (132), Expect = 2e-22
Identities = 168/233 (72%), Gaps = 2/233 (1%)
Strand=Plus/Plus
Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581
|||||| | || ||| | |||||| || || || ||| || || |||||||| |||||
Sbjct 22369932 ACCACCACGCAGACGGAGCACCAAGTGGAGGGTTGACTCCTTCTGAATGTTGTAGTCGGA 22369991
Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641
|| |||||| | || ||||| || || ||||| || |||| ||||||||| ||| | ||
Sbjct 22369992 CAGAGTGCGTCCATCCTCCAACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGG 22370051
Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCA 33700
| || || ||||| || || |||| ||| ||| ||||||||| | || |
Sbjct 22370052 GATGCCCTCCTTGTCTTGGATCTTGGCCTTCA-CATTCTCAATGGTGTCGCTGGGCTCAA 22370110
Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGTT 33753
| || | ||||| || || || || || || || |||||||||||||| |||
Sbjct 22370111 CCTCCAAGGTGATGGTCTTGCCAGTCAATGTCTTCACAAAGATCTGCATGGTT 22370163
Score = 111 bits (122), Expect = 1e-19
Identities = 164/230 (71%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581
|||||| | || ||| | |||||| || || || ||| || || |||||||| |||||
Sbjct 22368792 ACCACCACGCAGACGGAGCACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGA 22368851
Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641
|| |||||| | || ||||| || || ||||| || |||| ||||||||| ||| | ||
Sbjct 22368852 CAGAGTGCGTCCATCCTCCAACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGG 22368911
Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCA 33700
| || || ||||| || || |||| ||| ||| ||||||||| | || |
Sbjct 22368912 GATGCCCTCCTTGTCTTGGATCTTGGCCTTCA-CATTCTCAATGGTGTCGCTGGGCTCAA 22368970
Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750
| || | ||||| || || || || | || || || ||||||||||||
Sbjct 22368971 CCTCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATA 22369020
Score = 111 bits (122), Expect = 1e-19
Identities = 164/230 (71%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581
|||||| | || ||| | |||||| || || || ||| || || |||||||| |||||
Sbjct 22369020 ACCACCACGCAGACGGAGCACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGA 22369079
Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641
|| |||||| | || ||||| || || ||||| || |||| ||||||||| ||| | ||
Sbjct 22369080 CAGAGTGCGTCCATCCTCCAACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGG 22369139
Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCA 33700
| || || ||||| || || |||| ||| ||| ||||||||| | || |
Sbjct 22369140 GATGCCCTCCTTGTCTTGGATCTTGGCCTTCA-CATTCTCAATGGTGTCGCTGGGCTCAA 22369198
Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750
| || | ||||| || || || || | || || || ||||||||||||
Sbjct 22369199 CCTCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATA 22369248
Score = 111 bits (122), Expect = 1e-19
Identities = 164/230 (71%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581
|||||| | || ||| | |||||| || || || ||| || || |||||||| |||||
Sbjct 22369248 ACCACCACGCAGACGGAGCACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGA 22369307
Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641
|| |||||| | || ||||| || || ||||| || |||| ||||||||| ||| | ||
Sbjct 22369308 CAGAGTGCGTCCATCCTCCAACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGG 22369367
Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCA 33700
| || || ||||| || || |||| ||| ||| ||||||||| | || |
Sbjct 22369368 GATGCCCTCCTTGTCTTGGATCTTGGCCTTCA-CATTCTCAATGGTGTCGCTGGGCTCAA 22369426
Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750
| || | ||||| || || || || | || || || ||||||||||||
Sbjct 22369427 CCTCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATA 22369476
Score = 111 bits (122), Expect = 1e-19
Identities = 164/230 (71%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581
|||||| | || ||| | |||||| || || || ||| || || |||||||| |||||
Sbjct 22369476 ACCACCACGCAGACGGAGCACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGA 22369535
Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641
|| |||||| | || ||||| || || ||||| || |||| ||||||||| ||| | ||
Sbjct 22369536 CAGAGTGCGTCCATCCTCCAACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGG 22369595
Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCA 33700
| || || ||||| || || |||| ||| ||| ||||||||| | || |
Sbjct 22369596 GATGCCCTCCTTGTCTTGGATCTTGGCCTTCA-CATTCTCAATGGTGTCGCTGGGCTCAA 22369654
Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750
| || | ||||| || || || || | || || || ||||||||||||
Sbjct 22369655 CCTCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATA 22369704
Score = 111 bits (122), Expect = 1e-19
Identities = 164/230 (71%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581
|||||| | || ||| | |||||| || || || ||| || || |||||||| |||||
Sbjct 22369704 ACCACCACGCAGACGGAGCACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGA 22369763
Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641
|| |||||| | || ||||| || || ||||| || |||| ||||||||| ||| | ||
Sbjct 22369764 CAGAGTGCGTCCATCCTCCAACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGG 22369823
Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCA 33700
| || || ||||| || || |||| ||| ||| ||||||||| | || |
Sbjct 22369824 GATGCCCTCCTTGTCTTGGATCTTGGCCTTCA-CATTCTCAATGGTGTCGCTGGGCTCAA 22369882
Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750
| || | ||||| || || || || | || || || ||||||||||||
Sbjct 22369883 CCTCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATA 22369932
Score = 104 bits (114), Expect = 2e-17
Identities = 162/229 (71%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582
||||| | || ||| | ||||| || || || ||| || || |||||||| |||||
Sbjct 22368565 CCACCACGCAGACGGAGAACCAAGTGAAGGGTAGACTCCTTCTGAATGTTGTAGTCGGAC 22368624
Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642
|| |||||| | || ||||| || || ||||| || |||| ||||||||| ||| | ||
Sbjct 22368625 AGAGTGCGTCCATCCTCCAACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGG 22368684
Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCAC 33701
| || || ||||| || || |||| ||| ||| ||||||||| | || ||
Sbjct 22368685 ATGCCCTCCTTGTCTTGGATCTTGGCCTTCA-CATTCTCAATGGTGTCGCTGGGCTCAAC 22368743
Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750
|| | ||||| || || || || | || || || ||||||||||||
Sbjct 22368744 CTCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATA 22368792
>seq1
Length=33300182
Score = 102 bits (112), Expect = 5e-17
Identities = 162/230 (70%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580
||||||| | | || | |||||| || || ||| ||| ||||| || || || ||||
Sbjct 5269470 CACCACCACGGAGGCGGAGCACCAAGTGCAGGGTGGACTCCTTTTGAATATTATAGTCGG 5269411
Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640
| || || || | || |||||||| || || || || || ||||| || |||||| | |
Sbjct 5269410 ACAGAGTACGACCATCTTCCAATTGCTTGCCAGCGAAGATTAAACGTTGTTGATCTGGAG 5269351
Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699
| | ||||||||||| ||| || | || |||| || | || || || |||
Sbjct 5269350 GAATTCCTTCTTTGTCCTGAATCTT-GGCTTTGACATTTTCGATAGTATCCGATGGTTCG 5269292
Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|| |||| ||||| || ||||| || | ||||| || |||||||||||
Sbjct 5269291 ACCTCAAGAGTGATGGTCTTACCCGTAAGGGTTTTAACGAAGATCTGCAT 5269242
Score = 100 bits (110), Expect = 2e-16
Identities = 161/229 (70%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581
|||||| | || ||| | |||||| || ||||| ||| || || |||||||| |||||
Sbjct 90657 ACCACCACGCAGACGGAGCACCAAGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGA 90716
Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641
|| || || | || |||| || || ||||| || |||||||||||||||||| | ||
Sbjct 90717 CAGAGTACGGCCATCTTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGG 90776
Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700
| || |||||||| || || | | |||| || | |||||| | || |
Sbjct 90777 AATTCCCTCTTTGTCTTGGATCTT-GGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGA 90835
Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
| || | ||||| || || || || | ||||| |||||||| |||||
Sbjct 90836 CCTCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTCACAAAGATTTGCAT 90884
Score = 100 bits (110), Expect = 2e-16
Identities = 161/229 (70%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581
|||||| | || ||| | |||||| || ||||| ||| || || |||||||| |||||
Sbjct 2542955 ACCACCACGCAGACGGAGCACCAAGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGA 2542896
Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641
|| || || | || |||| || || ||||| || |||||||||||||||||| | ||
Sbjct 2542895 CAGAGTACGGCCATCTTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGG 2542836
Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700
| || |||||||| || || | | |||| || | |||||| | || |
Sbjct 2542835 AATTCCCTCTTTGTCTTGGATCTT-GGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGA 2542777
Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
| || | ||||| || || || || | ||||| |||||||| |||||
Sbjct 2542776 CCTCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTCACAAAGATTTGCAT 2542728
>seq5
Length=23724088
Score = 98.7 bits (108), Expect = 7e-16
Identities = 160/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582
||||| | || ||| |||||||| || || || ||| || || ||||| ||||| ||
Sbjct 5413798 CCACCACGCAGACGCAACACCAAGTGGAGGGTTGACTCCTTCTGGATGTTATAATCAGAA 5413739
Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642
|| || ||| | || || | || || || |||||||||||||||||||| ||| | ||
Sbjct 5413738 AGAGTACGTCCATCCTCAAGCTGCTTGCCAGCAAAAATCAAACGCTGCTGGTCTGGGGGA 5413679
Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701
| ||| || ||||| ||| || | | |||| || | ||| || | || ||
Sbjct 5413678 ATACCCTCCTTGTCCTGAATCTT-GGCCTTGACATTCTCAATGGTATCAGAAGGCTCAAC 5413620
Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|| | ||||| || || || ||||| ||||| || || ||||||||
Sbjct 5413619 TTCCAAGGTGATTGTCTTGCCAGTTAAAGTTTTGACGAAAATCTGCAT 5413572
Score = 98.7 bits (108), Expect = 7e-16
Identities = 102/134 (76%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582
||||| | || ||| |||||||| || || || ||| || || ||||| ||||| ||
Sbjct 5414026 CCACCACGCAGACGCAACACCAAGTGGAGGGTTGACTCCTTCTGGATGTTATAATCAGAA 5413967
Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642
|| || ||| | || |||| || || || || ||||||||||||||||||||| | ||
Sbjct 5413966 AGAGTACGTCCATCCTCCAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGATCTGGGGGA 5413907
Query 33643 ACACCTTCTTTGTC 33656
| |||||| |||||
Sbjct 5413906 ATACCTTCCTTGTC 5413893
Score = 98.7 bits (108), Expect = 7e-16
Identities = 102/134 (76%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582
||||| | || ||| |||||||| || || || ||| || || ||||| ||||| ||
Sbjct 5414254 CCACCACGCAGACGCAACACCAAGTGGAGGGTTGACTCCTTCTGGATGTTATAATCAGAA 5414195
Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642
|| || ||| | || |||| || || || || ||||||||||||||||||||| | ||
Sbjct 5414194 AGAGTACGTCCATCCTCCAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGATCTGGGGGA 5414135
Query 33643 ACACCTTCTTTGTC 33656
| |||||| |||||
Sbjct 5414134 ATACCTTCCTTGTC 5414121
Score = 87.8 bits (96), Expect = 1e-12
Identities = 93/123 (76%), Gaps = 0/123 (0%)
Strand=Plus/Minus
Query 33534 ACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTC 33593
||| || |||||||| || || ||| || || || ||||| || || || || ||| |
Sbjct 5414471 ACGCAAAACCAAATGGAGGGTTGACTCCTTCTGGATATTGTAGTCAGAAAGAGTACGTCC 5414412
Query 33594 GTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTT 33653
|| |||| || || || || ||||||||||||||||||||| | || | |||||| ||
Sbjct 5414411 ATCCTCCAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGATCTGGGGGAATACCTTCCTT 5414352
Query 33654 GTC 33656
|||
Sbjct 5414351 GTC 5414349
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 328703975963520
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