Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20busckii_20[refseq_20GCF_5F001277935.1_202015-09-02] 6 sequences; 135,748,557 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq1 116 9e-21 seq3 93.3 1e-13 >seq1 Length=33300182 Score = 116 bits (128), Expect = 9e-21 Identities = 139/189 (74%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| ||||| || || || ||||| ||||| || || |||||||| |||| Sbjct 90869 AAAACCCTCACCGGCAAGACCATCACCTTGGAGGTCGAGCCCTCTGACACCATCGAGAAT 90810 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| ||||| ||||| |||||| || || || | | |||||| Sbjct 90809 GTCAAGGCCAAGATCCAAGACAAAGAGGGAATTCCCCCAGATCAGCAGCGTTTGATCTTC 90750 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| |||||||||| | ||| || |||| |||||| ||||||| ||||| Sbjct 90749 GCCGGCAAGCAGCTGGAAGATGGCCGTACTCTGTCCGACTACAACATCCAGAAGGAGTCG 90690 Query 206365 ACTCTTCAC 206373 ||||| ||| Sbjct 90689 ACTCTGCAC 90681 Score = 116 bits (128), Expect = 9e-21 Identities = 139/189 (74%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| ||||| || || || ||||| ||||| || || |||||||| |||| Sbjct 2542743 AAAACCCTCACCGGCAAGACCATCACCTTGGAGGTCGAGCCCTCTGACACCATCGAGAAT 2542802 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| ||||| ||||| |||||| || || || | | |||||| Sbjct 2542803 GTCAAGGCCAAGATCCAAGACAAAGAGGGAATTCCCCCAGATCAGCAGCGTTTGATCTTC 2542862 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| |||||||||| | ||| || |||| |||||| ||||||| ||||| Sbjct 2542863 GCCGGCAAGCAGCTGGAAGATGGCCGTACTCTGTCCGACTACAACATCCAGAAGGAGTCG 2542922 Query 206365 ACTCTTCAC 206373 ||||| ||| Sbjct 2542923 ACTCTGCAC 2542931 Score = 87.8 bits (96), Expect = 4e-12 Identities = 135/190 (71%), Gaps = 2/190 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || || || || |||||| | || || ||| || || || ||||| Sbjct 5269257 AAAACCCTTACGGGTAAGACCATCACTCTTGAGGTCGAACCATCGGATACTATCGAAAAT 5269316 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| || |||||| || |||||||||||| || || ||| | | ||||| Sbjct 5269317 GTCAAAGCCAA-GATTCAGGACAAAGAAGGAATTCCTCCAGATCAACAACGTTTAATCTT 5269375 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||| || ||||| ||||||||||| | ||| || |||| || || | || || ||||| Sbjct 5269376 CGCTGGCAAGCAATTGGAAGATGGTCGTACTCTGTCCGACTATAATATTCAAAAGGAGTC 5269435 Query 206364 TACTCTTCAC 206373 || || ||| Sbjct 5269436 CACCCTGCAC 5269445 >seq3 Length=28180402 Score = 93.3 bits (102), Expect = 1e-13 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| ||||| || || || || || ||| || | || ||||||||||| ||| Sbjct 22368707 AAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAGCAGCGTCTGATCTTCGCCGGCAAG 22368648 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 |||||||| |||||| | ||| || |||| |||||| | ||||| |||||||| |||||| Sbjct 22368647 CAGTTGGAGGATGGACGCACTCTGTCCGACTACAACATTCAGAAGGAGTCTACCCTTCAC 22368588 Query 206374 CTTGTT 206379 | ||| Sbjct 22368587 TTGGTT 22368582 Score = 86.0 bits (94), Expect = 1e-11 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| ||||| || || || || || ||| || | || ||||||||||| ||| Sbjct 22368935 AAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAGCAGCGTCTGATCTTCGCCGGCAAG 22368876 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 |||||||| |||||| | ||| || |||| |||||| | ||||| |||||||| || ||| Sbjct 22368875 CAGTTGGAGGATGGACGCACTCTGTCCGACTACAACATTCAGAAGGAGTCTACCCTCCAC 22368816 Score = 86.0 bits (94), Expect = 1e-11 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| ||||| || || || || || ||| || | || ||||||||||| ||| Sbjct 22369163 AAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAGCAGCGTCTGATCTTCGCCGGCAAG 22369104 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 |||||||| |||||| | ||| || |||| |||||| | ||||| |||||||| || ||| Sbjct 22369103 CAGTTGGAGGATGGACGCACTCTGTCCGACTACAACATTCAGAAGGAGTCTACCCTCCAC 22369044 Score = 86.0 bits (94), Expect = 1e-11 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| ||||| || || || || || ||| || | || ||||||||||| ||| Sbjct 22369391 AAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAGCAGCGTCTGATCTTCGCCGGCAAG 22369332 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 |||||||| |||||| | ||| || |||| |||||| | ||||| |||||||| || ||| Sbjct 22369331 CAGTTGGAGGATGGACGCACTCTGTCCGACTACAACATTCAGAAGGAGTCTACCCTCCAC 22369272 Score = 86.0 bits (94), Expect = 1e-11 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| ||||| || || || || || ||| || | || ||||||||||| ||| Sbjct 22369619 AAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAGCAGCGTCTGATCTTCGCCGGCAAG 22369560 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 |||||||| |||||| | ||| || |||| |||||| | ||||| |||||||| || ||| Sbjct 22369559 CAGTTGGAGGATGGACGCACTCTGTCCGACTACAACATTCAGAAGGAGTCTACCCTCCAC 22369500 Score = 86.0 bits (94), Expect = 1e-11 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| ||||| || || || || || ||| || | || ||||||||||| ||| Sbjct 22369847 AAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAGCAGCGTCTGATCTTCGCCGGCAAG 22369788 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 |||||||| |||||| | ||| || |||| |||||| | ||||| |||||||| || ||| Sbjct 22369787 CAGTTGGAGGATGGACGCACTCTGTCCGACTACAACATTCAGAAGGAGTCTACCCTCCAC 22369728 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181820709147526