Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20busckii_20[refseq_20GCF_5F001277935.1_202015-09-02]
6 sequences; 135,748,557 total letters
Query= NC_025412.1
Length=369360
Score E
Sequences producing significant alignments: (Bits) Value
seq1 116 9e-21
seq3 93.3 1e-13
>seq1
Length=33300182
Score = 116 bits (128), Expect = 9e-21
Identities = 139/189 (74%), Gaps = 0/189 (0%)
Strand=Plus/Minus
Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244
||||| ||||| || || || ||||| ||||| || || |||||||| ||||
Sbjct 90869 AAAACCCTCACCGGCAAGACCATCACCTTGGAGGTCGAGCCCTCTGACACCATCGAGAAT 90810
Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304
|| ||| ||||| ||||| ||||| |||||| || || || | | ||||||
Sbjct 90809 GTCAAGGCCAAGATCCAAGACAAAGAGGGAATTCCCCCAGATCAGCAGCGTTTGATCTTC 90750
Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364
||||| |||||| |||||||||| | ||| || |||| |||||| ||||||| |||||
Sbjct 90749 GCCGGCAAGCAGCTGGAAGATGGCCGTACTCTGTCCGACTACAACATCCAGAAGGAGTCG 90690
Query 206365 ACTCTTCAC 206373
||||| |||
Sbjct 90689 ACTCTGCAC 90681
Score = 116 bits (128), Expect = 9e-21
Identities = 139/189 (74%), Gaps = 0/189 (0%)
Strand=Plus/Plus
Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244
||||| ||||| || || || ||||| ||||| || || |||||||| ||||
Sbjct 2542743 AAAACCCTCACCGGCAAGACCATCACCTTGGAGGTCGAGCCCTCTGACACCATCGAGAAT 2542802
Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304
|| ||| ||||| ||||| ||||| |||||| || || || | | ||||||
Sbjct 2542803 GTCAAGGCCAAGATCCAAGACAAAGAGGGAATTCCCCCAGATCAGCAGCGTTTGATCTTC 2542862
Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364
||||| |||||| |||||||||| | ||| || |||| |||||| ||||||| |||||
Sbjct 2542863 GCCGGCAAGCAGCTGGAAGATGGCCGTACTCTGTCCGACTACAACATCCAGAAGGAGTCG 2542922
Query 206365 ACTCTTCAC 206373
||||| |||
Sbjct 2542923 ACTCTGCAC 2542931
Score = 87.8 bits (96), Expect = 4e-12
Identities = 135/190 (71%), Gaps = 2/190 (1%)
Strand=Plus/Plus
Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244
||||| || || || || || |||||| | || || ||| || || || |||||
Sbjct 5269257 AAAACCCTTACGGGTAAGACCATCACTCTTGAGGTCGAACCATCGGATACTATCGAAAAT 5269316
Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303
|| ||||| || |||||| || |||||||||||| || || ||| | | |||||
Sbjct 5269317 GTCAAAGCCAA-GATTCAGGACAAAGAAGGAATTCCTCCAGATCAACAACGTTTAATCTT 5269375
Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363
||| || ||||| ||||||||||| | ||| || |||| || || | || || |||||
Sbjct 5269376 CGCTGGCAAGCAATTGGAAGATGGTCGTACTCTGTCCGACTATAATATTCAAAAGGAGTC 5269435
Query 206364 TACTCTTCAC 206373
|| || |||
Sbjct 5269436 CACCCTGCAC 5269445
>seq3
Length=28180402
Score = 93.3 bits (102), Expect = 1e-13
Identities = 96/126 (76%), Gaps = 0/126 (0%)
Strand=Plus/Minus
Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313
||||| ||||| || || || || || ||| || | || ||||||||||| |||
Sbjct 22368707 AAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAGCAGCGTCTGATCTTCGCCGGCAAG 22368648
Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373
|||||||| |||||| | ||| || |||| |||||| | ||||| |||||||| ||||||
Sbjct 22368647 CAGTTGGAGGATGGACGCACTCTGTCCGACTACAACATTCAGAAGGAGTCTACCCTTCAC 22368588
Query 206374 CTTGTT 206379
| |||
Sbjct 22368587 TTGGTT 22368582
Score = 86.0 bits (94), Expect = 1e-11
Identities = 91/120 (76%), Gaps = 0/120 (0%)
Strand=Plus/Minus
Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313
||||| ||||| || || || || || ||| || | || ||||||||||| |||
Sbjct 22368935 AAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAGCAGCGTCTGATCTTCGCCGGCAAG 22368876
Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373
|||||||| |||||| | ||| || |||| |||||| | ||||| |||||||| || |||
Sbjct 22368875 CAGTTGGAGGATGGACGCACTCTGTCCGACTACAACATTCAGAAGGAGTCTACCCTCCAC 22368816
Score = 86.0 bits (94), Expect = 1e-11
Identities = 91/120 (76%), Gaps = 0/120 (0%)
Strand=Plus/Minus
Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313
||||| ||||| || || || || || ||| || | || ||||||||||| |||
Sbjct 22369163 AAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAGCAGCGTCTGATCTTCGCCGGCAAG 22369104
Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373
|||||||| |||||| | ||| || |||| |||||| | ||||| |||||||| || |||
Sbjct 22369103 CAGTTGGAGGATGGACGCACTCTGTCCGACTACAACATTCAGAAGGAGTCTACCCTCCAC 22369044
Score = 86.0 bits (94), Expect = 1e-11
Identities = 91/120 (76%), Gaps = 0/120 (0%)
Strand=Plus/Minus
Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313
||||| ||||| || || || || || ||| || | || ||||||||||| |||
Sbjct 22369391 AAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAGCAGCGTCTGATCTTCGCCGGCAAG 22369332
Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373
|||||||| |||||| | ||| || |||| |||||| | ||||| |||||||| || |||
Sbjct 22369331 CAGTTGGAGGATGGACGCACTCTGTCCGACTACAACATTCAGAAGGAGTCTACCCTCCAC 22369272
Score = 86.0 bits (94), Expect = 1e-11
Identities = 91/120 (76%), Gaps = 0/120 (0%)
Strand=Plus/Minus
Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313
||||| ||||| || || || || || ||| || | || ||||||||||| |||
Sbjct 22369619 AAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAGCAGCGTCTGATCTTCGCCGGCAAG 22369560
Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373
|||||||| |||||| | ||| || |||| |||||| | ||||| |||||||| || |||
Sbjct 22369559 CAGTTGGAGGATGGACGCACTCTGTCCGACTACAACATTCAGAAGGAGTCTACCCTCCAC 22369500
Score = 86.0 bits (94), Expect = 1e-11
Identities = 91/120 (76%), Gaps = 0/120 (0%)
Strand=Plus/Minus
Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313
||||| ||||| || || || || || ||| || | || ||||||||||| |||
Sbjct 22369847 AAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAGCAGCGTCTGATCTTCGCCGGCAAG 22369788
Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373
|||||||| |||||| | ||| || |||| |||||| | ||||| |||||||| || |||
Sbjct 22369787 CAGTTGGAGGATGGACGCACTCTGTCCGACTACAACATTCAGAAGGAGTCTACCCTCCAC 22369728
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1181820709147526
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |