Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20busckii_20[refseq_20GCF_5F001277935.1_202015-09-02] 6 sequences; 135,748,557 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq1 104 2e-17 seq3 98.7 9e-16 seq5 84.2 2e-11 >seq1 Length=33300182 Score = 104 bits (114), Expect = 2e-17 Identities = 156/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||| | ||| | ||||| || | | | ||||| |||||||| || |||||| || || Sbjct 5269463 ACGGAGGCGGAGCACCAAGTGCAGGGTGGACTCCTTTTGAATATTATAGTCGGACAGAGT 5269404 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 ||| |||||| | || || || | |||||| ||| |||||||||||||| || || Sbjct 5269403 ACGACCATCTTCCAATTGCTTGCCAGCGAAGATTAAACGTTGTTGATCTGGAGGAATTCC 5269344 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 |||||| || ||| || ||| | | ||| | |||||| | || || || || | Sbjct 5269343 TTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTATCCGATGGTTCGACCTCAAG 5269284 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | || ||||| || || ||||| | ||| |||||||| Sbjct 5269283 AGTGATGGTCTTACCCGTAAGGGTTTTAACGAAGATCTGCAT 5269242 >seq3 Length=28180402 Score = 98.7 bits (108), Expect = 9e-16 Identities = 225/338 (67%), Gaps = 3/338 (1%) Strand=Plus/Plus Query 51541 CAATACCGATGATGCCGCAGCCGAGACGTCCGCCCGAGTTGCCCGTGGTCTTGCTCAGCG 51600 |||| || |||| ||||| || | || |||| | ||| || || |||||||| ||| Sbjct 13367449 CAATGCCAATGACACCGCATCCAATGCGAGCGCCAGCGTTTCCAGTTGTCTTGCTTAGCT 13367508 Query 51601 GATGGTCGGTGAGGCCGAGATCGTCGCGCTTTGCGTGAACCACCAGACTGCGGCCAACGA 51660 || || ||| | ||| ||| | | || || || |||| | |||| |||| || Sbjct 13367509 CGTGTCCGCCCTTGCCCAAATCATCGGGATCCGCATGTACTACCACAGTGCGTCCAATGA 13367568 Query 51661 CGCTATTTTCGCCGAAAAGCGTCATCACGTTGTCGATCTTGTCCACTTCGGTGAGGGCGT 51720 ||| || | ||||| || || ||| | ||| |||||||| | ||| || | | Sbjct 13367569 TGCTGTTGGCACCGAACAGTGTAATCTTGCAATCGCAAATGTCCACTGCAGTGGGGCCAT 13367628 Query 51721 TGGACACTTTAGCCTCGACATTGCCCAAGTCGCCGACGTGGCGCATCGCCGCGTTCGGAG 51780 | || | || | |||||||| || || | ||||| || | | | || | Sbjct 13367629 CGC---CTGTGGCAGTTATGTTGCCCAAATCACCCAAATGGCGGTTCTCATCAGTGGGTG 13367685 Query 51781 CGCCGTGGTCGCTGCCGGTGGGGTTGAAGTGTTCGCCCGCCGACGTGCAGCCGTTGCTGG 51840 | || || || |||| ||| |||||||| ||| | |||| ||||||| || || Sbjct 13367686 CACCATGCTCCTTGCCTTGGGGATTGAAGTGGGGGCCAGACGACATGCAGCCATTTGTGT 13367745 Query 51841 TGTCGCCGAATTCGTGCACGTGGAATCCGTGCAGGCCC 51878 ||||||| ||||||||||| ||||| || ||||| ||| Sbjct 13367746 TGTCGCCAAATTCGTGCACATGGAAGCCATGCAGACCC 13367783 Score = 89.7 bits (98), Expect = 5e-13 Identities = 153/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| || | |||||| || | | | ||||| || ||||||||||||||| || || Sbjct 22368570 ACGCAGACGGAGAACCAAGTGAAGGGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGT 22368629 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || ||| || | ||| || |||| |||| |||||||| || ||||| || ||||| Sbjct 22368630 GCGTCCATCCTCCAACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCC 22368689 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || || || || || |||| | || | || ||| | ||||| || || | Sbjct 22368690 CTCCTTGTCTTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCAACCTCCAA 22368749 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | || || |||||||| || || | ||| |||||||| Sbjct 22368750 GGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 22368791 Score = 86.0 bits (94), Expect = 6e-12 Identities = 152/222 (68%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| || | ||||| || | | | ||||| || ||||||||||||||| || || Sbjct 22368798 ACGCAGACGGAGCACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGT 22368857 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || ||| || | ||| || |||| |||| |||||||| || ||||| || ||||| Sbjct 22368858 GCGTCCATCCTCCAACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCC 22368917 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || || || || || |||| | || | || ||| | ||||| || || | Sbjct 22368918 CTCCTTGTCTTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCAACCTCCAA 22368977 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | || || |||||||| || || | ||| |||||||| Sbjct 22368978 GGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 22369019 Score = 86.0 bits (94), Expect = 6e-12 Identities = 152/222 (68%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| || | ||||| || | | | ||||| || ||||||||||||||| || || Sbjct 22369026 ACGCAGACGGAGCACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGT 22369085 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || ||| || | ||| || |||| |||| |||||||| || ||||| || ||||| Sbjct 22369086 GCGTCCATCCTCCAACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCC 22369145 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || || || || || |||| | || | || ||| | ||||| || || | Sbjct 22369146 CTCCTTGTCTTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCAACCTCCAA 22369205 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | || || |||||||| || || | ||| |||||||| Sbjct 22369206 GGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 22369247 Score = 86.0 bits (94), Expect = 6e-12 Identities = 152/222 (68%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| || | ||||| || | | | ||||| || ||||||||||||||| || || Sbjct 22369254 ACGCAGACGGAGCACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGT 22369313 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || ||| || | ||| || |||| |||| |||||||| || ||||| || ||||| Sbjct 22369314 GCGTCCATCCTCCAACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCC 22369373 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || || || || || |||| | || | || ||| | ||||| || || | Sbjct 22369374 CTCCTTGTCTTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCAACCTCCAA 22369433 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | || || |||||||| || || | ||| |||||||| Sbjct 22369434 GGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 22369475 Score = 86.0 bits (94), Expect = 6e-12 Identities = 152/222 (68%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| || | ||||| || | | | ||||| || ||||||||||||||| || || Sbjct 22369482 ACGCAGACGGAGCACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGT 22369541 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || ||| || | ||| || |||| |||| |||||||| || ||||| || ||||| Sbjct 22369542 GCGTCCATCCTCCAACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCC 22369601 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || || || || || |||| | || | || ||| | ||||| || || | Sbjct 22369602 CTCCTTGTCTTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCAACCTCCAA 22369661 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | || || |||||||| || || | ||| |||||||| Sbjct 22369662 GGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 22369703 Score = 86.0 bits (94), Expect = 6e-12 Identities = 152/222 (68%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| || | ||||| || | | | ||||| || ||||||||||||||| || || Sbjct 22369710 ACGCAGACGGAGCACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGT 22369769 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || ||| || | ||| || |||| |||| |||||||| || ||||| || ||||| Sbjct 22369770 GCGTCCATCCTCCAACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCC 22369829 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || || || || || |||| | || | || ||| | ||||| || || | Sbjct 22369830 CTCCTTGTCTTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCAACCTCCAA 22369889 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | || || |||||||| || || | ||| |||||||| Sbjct 22369890 GGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 22369931 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| || | ||||| || | | ||||||| || ||||||||||||||| || || Sbjct 22369938 ACGCAGACGGAGCACCAAGTGGAGGGTTGACTCCTTCTGAATGTTGTAGTCGGACAGAGT 22369997 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || ||| || | ||| || |||| |||| |||||||| || ||||| || ||||| Sbjct 22369998 GCGTCCATCCTCCAACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCC 22370057 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || || || || || |||| | || | || ||| | ||||| || || | Sbjct 22370058 CTCCTTGTCTTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCAACCTCCAA 22370117 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATGACTTATTA 132132 || | || || ||||||| || || | || ||||||||| || ||| Sbjct 22370118 GGTGATGGTCTTGCCAGTCAATGTCTTCACAAAGATCTGCATGGTTTTTTA 22370168 >seq5 Length=23724088 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||||||||||||| | | ||||||| || || || |||||||| | ||||| | Sbjct 5414470 CGCAAAACCAAATGGAGGGTTGACTCCTTCTGGATATTGTAGTCAGAAAGAGTACGTCCA 5414411 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 || || ||||| || || | | || | |||||| |||||||| || || ||||| || Sbjct 5414410 TCCTCCAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGATCTGGGGGAATACCTTCCTTG 5414351 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||| || || | | || | ||||| | ||||| || |||| || | Sbjct 5414350 TCCTGAATCTTGGCCTTAACGTTCTCAATGGTATCAGAGGGCTCAACCTCGAGGGTGATG 5414291 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || || ||||||| || || | ||| || |||||| Sbjct 5414290 GTCTTGCCAGTCAAGGTCTTGACGAAGATTTGCATG 5414255 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476611164254160