Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20busckii_20[refseq_20GCF_5F001277935.1_202015-09-02]
6 sequences; 135,748,557 total letters
Query= NC_026511.1
Length=140913
Score E
Sequences producing significant alignments: (Bits) Value
seq3 131 2e-25
seq5 104 2e-17
seq1 98.7 9e-16
>seq3
Length=28180402
Score = 131 bits (144), Expect = 2e-25
Identities = 165/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569
|||||||| | | | |||||| || | || |||||| ||||||||||| |||| |
Sbjct 22369933 CCACCACGCAGACGGAGCACCAAGTGGAGGGTTGACTCCTTCTGAATGTTGTAGTCGGAC 22369992
Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629
| || || | || |||| |||||| || || || |||| ||||||||||| | ||
Sbjct 22369993 AGAGTGCGTCCATCCTCCAACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGG 22370052
Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689
| || ||||||||| |||||| ||||| | | | | |||||||| | || |||
Sbjct 22370053 ATGCCCTCCTTGTCTTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCAACC 22370112
Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736
|||| ||||| || || || ||||| || |||||||| ||||||||
Sbjct 22370113 TCCAAGGTGATGGTCTTGCCAGTCAATGTCTTCACAAAGATCTGCAT 22370159
Score = 125 bits (138), Expect = 6e-24
Identities = 164/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569
|||||||| | | | |||||| || | ||| |||||| ||||||||||| |||| |
Sbjct 22368793 CCACCACGCAGACGGAGCACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGAC 22368852
Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629
| || || | || |||| |||||| || || || |||| ||||||||||| | ||
Sbjct 22368853 AGAGTGCGTCCATCCTCCAACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGG 22368912
Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689
| || ||||||||| |||||| ||||| | | | | |||||||| | || |||
Sbjct 22368913 ATGCCCTCCTTGTCTTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCAACC 22368972
Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736
|||| ||||| || || || |||| || ||||| || ||||||||
Sbjct 22368973 TCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 22369019
Score = 125 bits (138), Expect = 6e-24
Identities = 164/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569
|||||||| | | | |||||| || | ||| |||||| ||||||||||| |||| |
Sbjct 22369021 CCACCACGCAGACGGAGCACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGAC 22369080
Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629
| || || | || |||| |||||| || || || |||| ||||||||||| | ||
Sbjct 22369081 AGAGTGCGTCCATCCTCCAACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGG 22369140
Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689
| || ||||||||| |||||| ||||| | | | | |||||||| | || |||
Sbjct 22369141 ATGCCCTCCTTGTCTTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCAACC 22369200
Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736
|||| ||||| || || || |||| || ||||| || ||||||||
Sbjct 22369201 TCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 22369247
Score = 125 bits (138), Expect = 6e-24
Identities = 164/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569
|||||||| | | | |||||| || | ||| |||||| ||||||||||| |||| |
Sbjct 22369249 CCACCACGCAGACGGAGCACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGAC 22369308
Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629
| || || | || |||| |||||| || || || |||| ||||||||||| | ||
Sbjct 22369309 AGAGTGCGTCCATCCTCCAACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGG 22369368
Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689
| || ||||||||| |||||| ||||| | | | | |||||||| | || |||
Sbjct 22369369 ATGCCCTCCTTGTCTTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCAACC 22369428
Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736
|||| ||||| || || || |||| || ||||| || ||||||||
Sbjct 22369429 TCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 22369475
Score = 125 bits (138), Expect = 6e-24
Identities = 164/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569
|||||||| | | | |||||| || | ||| |||||| ||||||||||| |||| |
Sbjct 22369477 CCACCACGCAGACGGAGCACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGAC 22369536
Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629
| || || | || |||| |||||| || || || |||| ||||||||||| | ||
Sbjct 22369537 AGAGTGCGTCCATCCTCCAACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGG 22369596
Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689
| || ||||||||| |||||| ||||| | | | | |||||||| | || |||
Sbjct 22369597 ATGCCCTCCTTGTCTTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCAACC 22369656
Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736
|||| ||||| || || || |||| || ||||| || ||||||||
Sbjct 22369657 TCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 22369703
Score = 125 bits (138), Expect = 6e-24
Identities = 164/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569
|||||||| | | | |||||| || | ||| |||||| ||||||||||| |||| |
Sbjct 22369705 CCACCACGCAGACGGAGCACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGAC 22369764
Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629
| || || | || |||| |||||| || || || |||| ||||||||||| | ||
Sbjct 22369765 AGAGTGCGTCCATCCTCCAACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGG 22369824
Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689
| || ||||||||| |||||| ||||| | | | | |||||||| | || |||
Sbjct 22369825 ATGCCCTCCTTGTCTTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCAACC 22369884
Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736
|||| ||||| || || || |||| || ||||| || ||||||||
Sbjct 22369885 TCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 22369931
Score = 123 bits (136), Expect = 2e-23
Identities = 166/231 (72%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 35506 ATTTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATC 35565
|| ||||||||| | | | ||||| || | ||| |||||| ||||||||||| ||
Sbjct 22368561 ATGTCCACCACGCAGACGGAGAACCAAGTGAAGGGTAGACTCCTTCTGAATGTTGTAGTC 22368620
Query 35566 GGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGA 35625
|| || || || | || |||| |||||| || || || |||| ||||||||||| |
Sbjct 22368621 GGACAGAGTGCGTCCATCCTCCAACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGG 22368680
Query 35626 AGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTC 35685
|| | || ||||||||| |||||| ||||| | | | | |||||||| | ||
Sbjct 22368681 GGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTC 22368740
Query 35686 CACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736
||||||| ||||| || || || |||| || ||||| || ||||||||
Sbjct 22368741 AACCTCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 22368791
>seq5
Length=23724088
Score = 104 bits (114), Expect = 2e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569
|||||||| | | ||||||||| || | || |||||| || ||||| ||||| |
Sbjct 5413798 CCACCACGCAGACGCAACACCAAGTGGAGGGTTGACTCCTTCTGGATGTTATAATCAGAA 5413739
Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629
| || || | || || |||||||| || ||||| ||||| ||||||||||| | |||
Sbjct 5413738 AGAGTACGTCCATCCTCAAGCTGCTTGCCAGCAAAAATCAAACGCTGCTGGTCTGGGGGA 5413679
Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689
| | |||||||||| ||||| ||| | | | | | || || | || ||
Sbjct 5413678 ATACCCTCCTTGTCCTGAATCTTGGCCTTGACATTCTCAATGGTATCAGAAGGCTCAACT 5413619
Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736
|||| ||||| || || || || |||||||| || || ||||||||
Sbjct 5413618 TCCAAGGTGATTGTCTTGCCAGTTAAAGTTTTGACGAAAATCTGCAT 5413572
>seq1
Length=33300182
Score = 98.7 bits (108), Expect = 9e-16
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569
|||||||| | | | |||||| || | || |||||| || |||||||| |||| |
Sbjct 90658 CCACCACGCAGACGGAGCACCAAGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAC 90717
Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629
| || || | || ||||||||||| || || || ||||| |||||||| || | |||
Sbjct 90718 AGAGTACGGCCATCTTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGA 90777
Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689
| | ||| ||||| |||||| ||| | | | | | ||||| | || |||
Sbjct 90778 ATTCCCTCTTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACC 90837
Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736
|||| ||||| || || || || | ||||||||||| || |||||
Sbjct 90838 TCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTCACAAAGATTTGCAT 90884
Score = 98.7 bits (108), Expect = 9e-16
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569
|||||||| | | | |||||| || | || |||||| || |||||||| |||| |
Sbjct 2542954 CCACCACGCAGACGGAGCACCAAGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAC 2542895
Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629
| || || | || ||||||||||| || || || ||||| |||||||| || | |||
Sbjct 2542894 AGAGTACGGCCATCTTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGA 2542835
Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689
| | ||| ||||| |||||| ||| | | | | | ||||| | || |||
Sbjct 2542834 ATTCCCTCTTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACC 2542775
Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736
|||| ||||| || || || || | ||||||||||| || |||||
Sbjct 2542774 TCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTCACAAAGATTTGCAT 2542728
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 450793566190480
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