Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20busckii_20[refseq_20GCF_5F001277935.1_202015-09-02] 6 sequences; 135,748,557 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq1 113 5e-20 seq5 105 7e-18 >seq1 Length=33300182 Score = 113 bits (124), Expect = 5e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | ||| | ||| || ||||| ||||||||||| || |||||| Sbjct 5269468 CCACCACGGAGGCGGAGCACCAAGTGCAGGGTGGACTCCTTTTGAATATTATAGTCGGAC 5269409 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || || || || | || ||||| || || || ||||| || ||||| || || Sbjct 5269408 AGAGTACGACCATCTTCCAATTGCTTGCCAGCGAAGATTAAACGTTGTTGATCTGGAGGA 5269349 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || |||||||| || ||||| || |||||| || | || || || | ||| || Sbjct 5269348 ATTCCTTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTATCCGATGGTTCGACC 5269289 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTT 134716 || ||||| ||||| ||||| || | ||||||||||| || ||||| || Sbjct 5269288 TCAAGAGTGATGGTCTTACCCGTAAGGGTTTTAACGAAGATCTGCATCTT 5269239 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||| | ||| || || || ||||| || |||||||||||| | || | Sbjct 90667 AGACGGAGCACCAAGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTACGG 90726 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || ||||| ||||| || || ||||||||||||||||| || || || || ||| Sbjct 90727 CCATCTTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATTCCCTCT 90786 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || ||||| || || ||||| || | ||||| || | || || || | || Sbjct 90787 TTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACCTCCAAGGTG 90846 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTGTTTTTG 134723 ||||| || ||||| | ||||| || || |||||||| ||| | ||| Sbjct 90847 ATGGTCTTGCCGGTGAGGGTTTTCACAAAGATTTGCATCTTGGTATTG 90894 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||| | ||| || || || ||||| || |||||||||||| | || | Sbjct 2542945 AGACGGAGCACCAAGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTACGG 2542886 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || ||||| ||||| || || ||||||||||||||||| || || || || ||| Sbjct 2542885 CCATCTTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATTCCCTCT 2542826 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || ||||| || || ||||| || | ||||| || | || || || | || Sbjct 2542825 TTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACCTCCAAGGTG 2542766 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTGTTTTTG 134723 ||||| || ||||| | ||||| || || |||||||| ||| | ||| Sbjct 2542765 ATGGTCTTGCCGGTGAGGGTTTTCACAAAGATTTGCATCTTGGTATTG 2542718 >seq5 Length=23724088 Score = 105 bits (116), Expect = 7e-18 Identities = 156/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||||||| | ||| || || || ||||| || ||||| || || || || | Sbjct 5413789 AGACGCAACACCAAGTGGAGGGTTGACTCCTTCTGGATGTTATAATCAGAAAGAGTACGT 5413730 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || ||||| ||||| |||||||||||||||||||| || || || || || || Sbjct 5413729 CCATCCTCAAGCTGCTTGCCAGCAAAAATCAAACGCTGCTGGTCTGGGGGAATACCCTCC 5413670 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || ||||| || ||||| || | || || || | || || || | || Sbjct 5413669 TTGTCCTGAATCTTGGCCTTGACATTCTCAATGGTATCAGAAGGCTCAACTTCCAAGGTG 5413610 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTT 134716 || || || || ||||||||||| |||||||| ||||| || Sbjct 5413609 ATTGTCTTGCCAGTTAAAGTTTTGACGAAAATCTGCATCTT 5413569 Score = 105 bits (116), Expect = 7e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||||||| | ||| || || || ||||| || ||||| || || || || | Sbjct 5414017 AGACGCAACACCAAGTGGAGGGTTGACTCCTTCTGGATGTTATAATCAGAAAGAGTACGT 5413958 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || ||||| ||||| || |||||||||||||||||||| || || || ||||| Sbjct 5413957 CCATCCTCCAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGATCTGGGGGAATACCTTCC 5413898 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || ||||| || || || || | || || || | || || ||||| || Sbjct 5413897 TTGTCCTGAATCTTGGCCTTAACGTTCTCAATGGTATCAGAGGGCTCAACCTCGAGGGTG 5413838 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || || || || || || ||||| |||||||| Sbjct 5413837 ATGGTCTTGCCAGTCAAGGTCTTGACGAAGATTTGCAT 5413800 Score = 105 bits (116), Expect = 7e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||||||| | ||| || || || ||||| || ||||| || || || || | Sbjct 5414245 AGACGCAACACCAAGTGGAGGGTTGACTCCTTCTGGATGTTATAATCAGAAAGAGTACGT 5414186 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || ||||| ||||| || |||||||||||||||||||| || || || ||||| Sbjct 5414185 CCATCCTCCAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGATCTGGGGGAATACCTTCC 5414126 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || ||||| || || || || | || || || | || || ||||| || Sbjct 5414125 TTGTCCTGAATCTTGGCCTTAACGTTCTCAATGGTATCAGAGGGCTCAACCTCGAGGGTG 5414066 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || || || || || || ||||| |||||||| Sbjct 5414065 ATGGTCTTGCCAGTCAAGGTCTTGACGAAGATTTGCAT 5414028 Score = 102 bits (112), Expect = 8e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 |||| || | || ||||| || | || || || || ||||| || || |||||||| Sbjct 5414484 TTCCGCCGCGAAGACGCAAAACCAAATGGAGGGTTGACTCCTTCTGGATATTGTAGTCAG 5414425 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 || || | || || ||||| ||||| || |||||||||||||||||||| || | Sbjct 5414424 AAAGAGTACGTCCATCCTCCAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGATCTGGGG 5414365 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | || ||||| || || ||||| || || || || | || || || | || | Sbjct 5414364 GAATACCTTCCTTGTCCTGAATCTTGGCCTTAACGTTCTCAATGGTATCAGAGGGCTCAA 5414305 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 | ||||| || ||||| || || || || || || ||||| |||||||| Sbjct 5414304 CCTCGAGGGTGATGGTCTTGCCAGTCAAGGTCTTGACGAAGATTTGCAT 5414256 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505398362095120