Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20busckii_20[refseq_20GCF_5F001277935.1_202015-09-02] 6 sequences; 135,748,557 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq2 232 9e-56 seq1 84.2 3e-11 >seq2 Length=22510139 Score = 232 bits (256), Expect = 9e-56 Identities = 538/807 (67%), Gaps = 7/807 (1%) Strand=Plus/Minus Query 39347 TTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTA 39406 ||||| || || |||||||| || ||||| || || |||||||||| || ||||| Sbjct 3319283 TTCTCAAAGAAGTTAGTTTTTCCGTCCAACGAAATCATTTCCATGAATGTCAATGGATTC 3319224 Query 39407 GTTGCATTATAtttttttttAAATCCTAATTCTGAAATCAATCTATCTGCAACAAATTCT 39466 ||| |||||| ||||| | || | || | || | ||| || || || || Sbjct 3319223 TTTGTATTATAGATTTTTCCCACACCAAGCTCCACCAGCAGGCGATCAGCCACGAACTCA 3319164 Query 39467 ATGTATGTTTTCATCATTTCACAATTCATTCCTATGAGTTTAACTGGTAGAGCCTCCGTT 39526 ||||| | ||||| | || ||||| || || | |||||||| ||||| || || Sbjct 3319163 ATGTACTCTGACATCAGAGCGCAGTTCATGCCAATCAAGTTAACTGGCAGAGCATCTGTG 3319104 Query 39527 AGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTATCG--ATGTTACTACCTCATCAC 39584 || ||||| | ||| || | || || || || || | ||| | | |||| | Sbjct 3319103 AGGAACTCCTGTTCAATCTTGACAGCATCCTCAATAATTGCAATGATGCG--CTCACGGC 3319046 Query 39585 TCGGTGGATGCAATAAATGTTTAAACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCAT 39644 | || | |||| ||||| ||||| || ||| |||||||| || | |||||||| Sbjct 3319045 TGGGACGTTGCACCAAATGGCGGAACATCAACACGGCAAAGTCACAGTGCAAGCCCTCAT 3318986 Query 39645 CTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCC 39704 | | |||| || || || || || | |||||||| || |||||||| || |||| Sbjct 3318985 CGCGCGAGATTAGCTCATTGGAGAAGGTCAAGCCAGGCATGAGGCCACGCTTCTTTAGCC 3318926 Query 39705 AAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAA 39764 | || |||| || || || |||||| ||||| || || || || || |||| || Sbjct 3318925 AGAAAATGGAGGCGAAGCTGCCGCTAAAGAAAATGCCCTCAACGGCGGCGAAGGCAATAA 3318866 Query 39765 GTCTCTCTCCGTAACTTGTATCATT--ATG-TATCCACTTCTGTGCCCAATCAGCTTTCT 39821 | ||| || | | | | | || | | |||||| |||||| ||||| || Sbjct 3318865 TCCGCTCGCCAAAGTTGGCAGCCTTGGAGGATATCCATGATAATGCCCAGTCAGCCTTGC 3318806 Query 39822 TCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATAATGTTTTTCATCACTATCTT 39881 ||| ||| ||||||||||| || ||||| || ||||| | | | ||| Sbjct 3318805 GCTTCACAGCCGGCATTGTTTCAATTGCATTGAACAGATAGTCACGCTGTTGGGGATCAC 3318746 Query 39882 TAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCT 39941 ||||| ||||| || | || ||||||||| || || |||| || || ||||| |||| Sbjct 3318745 GGACATACGTATCAATGAGCACACTATACATCTCCGAGTGGACATTCTCCATCGCAATCT 3318686 Query 39942 GAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCA 40001 | ||||| ||||| || | ||| || || || || || ||| || ||| | || ||| Sbjct 3318685 GGAATCCATAAAAGCAGCGTGCCTCTGTTATCTGCACTTCTTGACTAAAGCGCTCAACCA 3318626 Query 40002 AATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAAT 40061 || ||||| || || |||||| || || ||||||||||| |||||| |||||| | Sbjct 3318625 GGTTCTCATTGACAATGCCATCAGAGGCTGCGAAAAATGCCAACACATGTGAAATAAAGT 3318566 Query 40062 ATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTT 40121 |||| | ||| | | ||||||| | || || || || | ||| ||||||| Sbjct 3318565 GACGCTCATTGTCTGTAAGACGTTCCCAGTCAGTCATGTCCTTAGACAGATCCACTTCTT 3318506 Query 40122 CAGCTGTCCAAAACGACGCCTCTGCCT 40148 | | |||||||| || || || |||| Sbjct 3318505 CCACAGTCCAAAATGAGGCTTCGGCCT 3318479 >seq1 Length=33300182 Score = 84.2 bits (92), Expect = 3e-11 Identities = 85/110 (77%), Gaps = 2/110 (2%) Strand=Plus/Minus Query 34709 TCCTTGACCTGTGTTAGAGAACGCCAATCCATATTAGCACTTCCTAGATAAATGTGTGCA 34768 ||||||||||| ||||| | |||||||||||||||||| || || || |||| ||| Sbjct 18554136 TCCTTGACCTGCGTTAGTGCACGCCAATCCATATTAGCGCTGCCCAGGTAAAAGTGCTGT 18554077 Query 34769 TTATCCGATATCCAAAATTTTGTATGAAGAACACCGC--CTAAAATATTT 34816 |||| ||||||| |||||| || | || ||||| | ||||||||| Sbjct 18554076 CCATCCACAATCCAAAGTTTTGTGTGCAAAATACCGCCACCAAAATATTT 18554027 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686908748481840