Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20busckii_20[refseq_20GCF_5F001277935.1_202015-09-02]
6 sequences; 135,748,557 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq2 232 9e-56
seq1 84.2 3e-11
>seq2
Length=22510139
Score = 232 bits (256), Expect = 9e-56
Identities = 538/807 (67%), Gaps = 7/807 (1%)
Strand=Plus/Minus
Query 39347 TTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTA 39406
||||| || || |||||||| || ||||| || || |||||||||| || |||||
Sbjct 3319283 TTCTCAAAGAAGTTAGTTTTTCCGTCCAACGAAATCATTTCCATGAATGTCAATGGATTC 3319224
Query 39407 GTTGCATTATAtttttttttAAATCCTAATTCTGAAATCAATCTATCTGCAACAAATTCT 39466
||| |||||| ||||| | || | || | || | ||| || || || ||
Sbjct 3319223 TTTGTATTATAGATTTTTCCCACACCAAGCTCCACCAGCAGGCGATCAGCCACGAACTCA 3319164
Query 39467 ATGTATGTTTTCATCATTTCACAATTCATTCCTATGAGTTTAACTGGTAGAGCCTCCGTT 39526
||||| | ||||| | || ||||| || || | |||||||| ||||| || ||
Sbjct 3319163 ATGTACTCTGACATCAGAGCGCAGTTCATGCCAATCAAGTTAACTGGCAGAGCATCTGTG 3319104
Query 39527 AGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTATCG--ATGTTACTACCTCATCAC 39584
|| ||||| | ||| || | || || || || || | ||| | | |||| |
Sbjct 3319103 AGGAACTCCTGTTCAATCTTGACAGCATCCTCAATAATTGCAATGATGCG--CTCACGGC 3319046
Query 39585 TCGGTGGATGCAATAAATGTTTAAACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCAT 39644
| || | |||| ||||| ||||| || ||| |||||||| || | ||||||||
Sbjct 3319045 TGGGACGTTGCACCAAATGGCGGAACATCAACACGGCAAAGTCACAGTGCAAGCCCTCAT 3318986
Query 39645 CTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCC 39704
| | |||| || || || || || | |||||||| || |||||||| || ||||
Sbjct 3318985 CGCGCGAGATTAGCTCATTGGAGAAGGTCAAGCCAGGCATGAGGCCACGCTTCTTTAGCC 3318926
Query 39705 AAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAA 39764
| || |||| || || || |||||| ||||| || || || || || |||| ||
Sbjct 3318925 AGAAAATGGAGGCGAAGCTGCCGCTAAAGAAAATGCCCTCAACGGCGGCGAAGGCAATAA 3318866
Query 39765 GTCTCTCTCCGTAACTTGTATCATT--ATG-TATCCACTTCTGTGCCCAATCAGCTTTCT 39821
| ||| || | | | | | || | | |||||| |||||| ||||| ||
Sbjct 3318865 TCCGCTCGCCAAAGTTGGCAGCCTTGGAGGATATCCATGATAATGCCCAGTCAGCCTTGC 3318806
Query 39822 TCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATAATGTTTTTCATCACTATCTT 39881
||| ||| ||||||||||| || ||||| || ||||| | | | |||
Sbjct 3318805 GCTTCACAGCCGGCATTGTTTCAATTGCATTGAACAGATAGTCACGCTGTTGGGGATCAC 3318746
Query 39882 TAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCT 39941
||||| ||||| || | || ||||||||| || || |||| || || ||||| ||||
Sbjct 3318745 GGACATACGTATCAATGAGCACACTATACATCTCCGAGTGGACATTCTCCATCGCAATCT 3318686
Query 39942 GAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCA 40001
| ||||| ||||| || | ||| || || || || || ||| || ||| | || |||
Sbjct 3318685 GGAATCCATAAAAGCAGCGTGCCTCTGTTATCTGCACTTCTTGACTAAAGCGCTCAACCA 3318626
Query 40002 AATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAAT 40061
|| ||||| || || |||||| || || ||||||||||| |||||| |||||| |
Sbjct 3318625 GGTTCTCATTGACAATGCCATCAGAGGCTGCGAAAAATGCCAACACATGTGAAATAAAGT 3318566
Query 40062 ATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTT 40121
|||| | ||| | | ||||||| | || || || || | ||| |||||||
Sbjct 3318565 GACGCTCATTGTCTGTAAGACGTTCCCAGTCAGTCATGTCCTTAGACAGATCCACTTCTT 3318506
Query 40122 CAGCTGTCCAAAACGACGCCTCTGCCT 40148
| | |||||||| || || || ||||
Sbjct 3318505 CCACAGTCCAAAATGAGGCTTCGGCCT 3318479
>seq1
Length=33300182
Score = 84.2 bits (92), Expect = 3e-11
Identities = 85/110 (77%), Gaps = 2/110 (2%)
Strand=Plus/Minus
Query 34709 TCCTTGACCTGTGTTAGAGAACGCCAATCCATATTAGCACTTCCTAGATAAATGTGTGCA 34768
||||||||||| ||||| | |||||||||||||||||| || || || |||| |||
Sbjct 18554136 TCCTTGACCTGCGTTAGTGCACGCCAATCCATATTAGCGCTGCCCAGGTAAAAGTGCTGT 18554077
Query 34769 TTATCCGATATCCAAAATTTTGTATGAAGAACACCGC--CTAAAATATTT 34816
|||| ||||||| |||||| || | || ||||| | |||||||||
Sbjct 18554076 CCATCCACAATCCAAAGTTTTGTGTGCAAAATACCGCCACCAAAATATTT 18554027
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686908748481840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |