Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20busckii_20[refseq_20GCF_5F001277935.1_202015-09-02] 6 sequences; 135,748,557 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq2 192 5e-44 seq4 122 7e-23 seq1 105 5e-18 >seq2 Length=22510139 Score = 192 bits (212), Expect = 5e-44 Identities = 555/840 (66%), Gaps = 22/840 (3%) Strand=Plus/Plus Query 43757 GCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGG-ATTGC 43815 || ||||||||||| | |||||||| ||| || |||| ||| | | | ||| | | Sbjct 3318487 GCCTCATTTTGGACTGTGGAAGAAGTGGATCTGTCTAAGGACATGACTGACTGGGAACGT 3318546 Query 43816 ATTAAAACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGA 43875 ||| | || | || || ||||| || || ||||| ||||| || || || Sbjct 3318547 CTTACAGACA-ATGAGCGTCACTTTATTTCACATGTGTTGGCATTTTTCGCAGCCTCTGA 3318605 Query 43876 CGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGC 43935 || || |||||||| || ||||| || ||| |||||||| || || |||| || Sbjct 3318606 TGGCATTGTCAATGAGAACCTGGTTGAGCGCTTTAGTCAAGAAGTGCAGATAACAGAGGC 3318665 Query 43936 ACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCT 43995 ||| || |||||||| || || ||||| || || ||| | || ||||| ||||| ||| | Sbjct 3318666 ACGCTGCTTTTATGGATTCCAGATTGCGATGGAGAATGTCCACTCGGAGATGTATAGTGT 3318725 Query 43996 TCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCAT--CGAT-TGTTTAATGCGAT 44052 || || |||||||| || ||| | | | ||| | | || |||| ||||| || Sbjct 3318726 GCTCATTGATACGTATGTCCGTGAT---CCCCAACAGCGTGACTATCTGTTCAATGCAAT 3318782 Query 44053 AGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAA 44112 |||||| | || || | || | || || |||||||| | ||||||| || || Sbjct 3318783 TGAAACAATGCCGGCTGTGAAGCGCAAGGCTGACTGGGCATTATCATGGATATCCTCCAA 3318842 Query 44113 TGATTCT---TTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTC 44169 | | | ||||| || || || | || || || | || || |||||||||||| Sbjct 3318843 GGCTGCCAACTTTGGCGAGCGGATTATTGCCTTCGCCGCCGTTGAGGGCATTTTCTTTAG 3318902 Query 44170 AGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTT 44229 || || || |||| || ||| ||||||| || || | |||||||| ||||| || Sbjct 3318903 CGGCAGCTTCGCCTCCATTTTCTGGCTAAAGAAGCGTGGCCTCATGCCTGGCTTGACCTT 3318962 Query 44230 TTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTTACT 44289 || |||||| |||| || ||||| ||||| || || || ||||| ||| | | Sbjct 3318963 CTCCAATGAGCTAATCTCGCGCGATGAGGGCTTGCACTGTGACTTTGCCGTGTTGATGTT 3319022 Query 44290 TGGATATCTAG-GAGACG-ATAAGCCTTCATGTAAGACAATTACAGATATTGTTGTAGAG 44347 | || | | | ||| |||| || || || | | ||| ||| || Sbjct 3319023 CCGCCATTTGGTGCAACGTCCCAGCC-----GTGAGCGCATCATTGCAATTATTGAGGAT 3319077 Query 44348 GCAGTAAAGATAGAACAAGAATTTATGACAACAGCATTACCTGTAAATTTAATAGGAATG 44407 || || ||||| ||||| || || | ||| || | || || || || || || ||| Sbjct 3319078 GCTGTCAAGATTGAACAGGAGTTCCTCACAGATGCTCTGCCAGTTAACTTGATTGGCATG 3319137 Query 44408 AA-TGAACTTTTGATGAACCAATATATTGAATACATTGCAGATCGTTTACTTTTGGAACT 44466 || || | | ||||| | || ||||| | | | || ||||| | || |||| || Sbjct 3319138 AACTGCGC-TCTGATGTCAGAGTACATTGAGTTCGTGGCTGATCGCCTGCTGGTGGAGCT 3319196 Query 44467 GGGT-TGCGATAAACACTATATTGTACAAAACCCGTTTGATTTTATGGAAAATATTTCGT 44525 ||| || || ||| ||||| | | | || || || || ||||||| ||||||| Sbjct 3319197 TGGTGTGGGA-AAAATCTATAATACAAAGAATCCATTGACATTCATGGAAATGATTTCGT 3319255 Query 44526 TGGAAGGCAAAACAAACTTTTTTGAAAAACGCGTTGGAGAATATCAGCGAATGGGCGTCA 44585 |||| || ||||| ||||| ||||| || || || || ||||| || ||||| |||| Sbjct 3319256 TGGACGGAAAAACTAACTTCTTTGAGAAGAAAGTGGGCGAGTATCAACGCATGGGTGTCA 3319315 >seq4 Length=26871514 Score = 122 bits (134), Expect = 7e-23 Identities = 337/515 (65%), Gaps = 10/515 (2%) Strand=Plus/Minus Query 19243 ATTGGAGGATTGAGTAAAGAGTTTTCTGAAATCTTTCGTAGAGCATTTGTGTCGCGTGTT 19302 ||||| || ||| ||||| ||| || |||||||| | || |||| |||||||| Sbjct 14979185 ATTGGTGGCTTGGACAAAGAATTTAATGCTATCTTTCGACGCGCCTTTGCATCGCGTGTG 14979126 Query 19303 TTTTCTGCAGATGTCATTAAACAATTGGGATGTAAACATGTTCGTGGACTTTTGCTTTAT 19362 ||| | |||| || || | |||||||| ||| || || || | || |||||| Sbjct 14979125 TTTCCACCAGAGCTCGTTGAGCAATTGGGCATTAAGCACGTCAAGGGCATCTTACTTTAT 14979066 Query 19363 GGGCCACCGGGTTGTGGAAAAACATTAATTGCGAGAGAACTTAGTAAATTACTTACAAAA 19422 || ||||| || || || ||| | || || || || | | | | || | Sbjct 14979065 GGACCACCTGGCACCGGCAAGACACTGATGGCTCGACAAATCGGCACCATGCTGAATGCG 14979006 Query 19423 CAACCTCCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAA 19482 | ||||| ||||| ||||| || | || | |||||||||| ||| | || || Sbjct 14979005 CGTGAGCCCAAGATTGTGAATGGCCCGCAGATTCTGGATAAATATGTTGGTGAGTCCGAG 14978946 Query 19483 GAAAATGTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCGCAAA 19542 | || |||| || |||||||| || || || ||||| | |||||| | || | ||| Sbjct 14978945 GCCAACATACGTCGCTTGTTTGCCGAGGCGGAGGAAGAGGAGAAACGTCTGGGCCCCAAC 14978886 Query 19543 AGTTCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTCT 19602 || | ||||||| || ||| | || ||| | || || || || ||| | || ||| Sbjct 14978885 AGCGGTCTGCACATAATTATATTTGACGAAATCGATGCTATTTGCAAGGCGCGTGGCTCT 14978826 Query 19603 GGTGTA------AATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGAC 19656 | | | ||| || ||||| || ||||||||||| || || | ||| | || Sbjct 14978825 GTAGCCGGCAACAGTGGTGTCCATGATACCGTTGTCAATCAGCTGTTGGCCAAAATCGAT 14978766 Query 19657 GGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATA 19716 || || | |||||||| || || | || || |||||||| ||| | | ||| | || Sbjct 14978765 GGCGTGGAACAACTGAACAACATACTGGTCATCGGCATGACCAATCGTCGGGATATGATT 14978706 Query 19717 GA--CAGCGCCTTATTACGACCCGGTCGGTTGGAA 19749 || ||||| | | ||||| ||||| ||||| Sbjct 14978705 GATGAAGCGC--TGCTGCGACCTGGTCGTCTGGAA 14978673 >seq1 Length=33300182 Score = 105 bits (116), Expect = 5e-18 Identities = 290/440 (66%), Gaps = 12/440 (3%) Strand=Plus/Plus Query 40860 GATGAAGGTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAATAT 40919 || ||||||||| | ||||| || ||||| || |||| ||| || ||||| || | ||| Sbjct 20734668 GAGGAAGGTGATTTGGGTCCCGTGTATGGTTTCCAGTGGCGTCACTTTGGTGCGGAGTAT 20734727 Query 40920 GACACTATGTACTC-TGATTATACCAATAAAGGAATGGATCAATTACAGTGCGTTATAGA 40978 ||| |||| | ||| || | | |||| || ||||| | ||| ||||| | Sbjct 20734728 CGCACC-TGTAATGATGAATACAGCGGCCAAGGCATTGATCAGCTCCAGGAGGTTATTAA 20734786 Query 40979 TACGATTA-----AATCCGATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCA 41033 ||| | ||||| | | ||| || || || ||| ||| ||| ||||| || Sbjct 20734787 TACCTTGCGCAAGAATCCAA--CTGAT---CGTCGCATCATAATGTCCGCCTGGAATCCC 20734841 Query 41034 ACGGACGTACATTTGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGC 41093 | || ||| |||||| |||| ||||| || | | ||||| || || | Sbjct 20734842 ATTGATATACCCAAAATGGCACTGCCGCCTTGCCACTGCCTGGTGCAGTTCTATGTGGCC 20734901 Query 41094 AATGGTGAACTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCG 41153 ||||||||||| || ||||| | |||||| | | ||||||||||| || || || Sbjct 20734902 AATGGTGAACTCTCCTGTCAGCTTTATCAACGCAGCGCCGACATGGGACTGGGAGTTCCC 20734961 Query 41154 TTTAACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCACACGTTACCAATTTAAAA 41213 || ||||| || ||||| | || || |||||||| || || || || || || Sbjct 20734962 TTCAACATTGCATCCTATGCGTTTCTTACCTATATGATAGCCCATGTAACGGGCTTGAAG 20735021 Query 41214 CCTGGTGAATTTGTTCACACGTTAGGAGATGGACATATTTACATTAATCACATAGAGCCG 41273 | || || ||| | || ||| | || |||| ||| | || | ||||| | ||||| Sbjct 20735022 ACAGGCGACTTTATCCATACGCTTGGCGATGCTCATGTCTATAAGAATCATGTGGAGCCA 20735081 Query 41274 TTAACAGAACAACTGACACG 41293 || | |||||| || | ||| Sbjct 20735082 TTGAGAGAACAGCTCAAACG 20735101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397455970936030