Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20busckii_20[refseq_20GCF_5F001277935.1_202015-09-02] 6 sequences; 135,748,557 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq2 118 1e-21 >seq2 Length=22510139 Score = 118 bits (130), Expect = 1e-21 Identities = 248/367 (68%), Gaps = 2/367 (1%) Strand=Plus/Minus Query 129742 CTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATAAAATCAAATGGGTT 129801 |||||| |||||||| || || |||||||| || | ||||| || ||||| || Sbjct 3319284 CTTCTCAAAGAAGTTAGTTTTTCCGTCCAACGAAATCATTTCCATGAATGTCAATGGATT 3319225 Query 129802 CTTTGAGTTCCAAATTGCTGGCACTCCAATCTGTTTGAGGAGACGATCCGAGACGTACTC 129861 ||||| || | ||| | ||| |||| || || || ||||| | ||| |||| Sbjct 3319224 CTTTGTATTATAGATTTTTCCCACACCAAGCTCCACCAGCAGGCGATCAGCCACGAACTC 3319165 Query 129862 AATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACATGGGAGCGCGTCCAA 129921 ||||||||| |||||| || ||||||| || || | |||| ||| || || || Sbjct 3319164 AATGTACTCTGACATCAGAGCGCAGTTCATGCCAATCAAGTTAACTGGCAGAGCATCTGT 3319105 Query 129922 GATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTGAATGGTCTCCGTGCC 129981 || |||| ||| ||||| | ||||| ||| | || || ||| ||| || Sbjct 3319104 GAGGAACTCCTGTTCAATCTTGACAGCATCCTCAATAATTGCAATGATGCGCTCACGGCT 3319045 Query 129982 AGGTCTATTGC-GCAAAGTCTTGAAGAGTTCCACGGCAAACTCCTGGTGGAGACCCTCGT 130040 || | |||| |||| ||| | ||||||||| || ||| | ||||| | Sbjct 3319044 GGGAC-GTTGCACCAAATGGCGGAACATCAACACGGCAAAGTCACAGTGCAAGCCCTCAT 3318986 Query 130041 CACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCTTCAACC 130100 | || ||||| || ||||| |||||| || || |||||||| || |||||||| | || Sbjct 3318985 CGCGCGAGATTAGCTCATTGGAGAAGGTCAAGCCAGGCATGAGGCCACGCTTCTTTAGCC 3318926 Query 130101 AGAAAAT 130107 ||||||| Sbjct 3318925 AGAAAAT 3318919 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618435153617360