Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20busckii_20[refseq_20GCF_5F001277935.1_202015-09-02] 6 sequences; 135,748,557 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq1 138 1e-27 >seq1 Length=33300182 Score = 138 bits (152), Expect = 1e-27 Identities = 196/274 (72%), Gaps = 4/274 (1%) Strand=Plus/Minus Query 117304 AGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTG 117363 |||||| || ||||||| ||| || |||||||||||| | ||||| |||||||| || Sbjct 19593935 AGTGAATATATAACGAGCGCTAGCGCTATCCTTGCCACCTGTTAGACGTGTACCGAACTG 19593876 Query 117364 TCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGAC 117423 |||| ||||| | | || | ||||| | |||||||||||| || ||||| ||||| Sbjct 19593875 ACCACGGGGCTCTAGTAAATTAATATTGTTCGAGCCCACAAAGTTCTGTGCCAAATTGAC 19593816 Query 117424 AATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCC 117483 ||| || || | | |||| || || ||||| || | |||||| ||||| |||| Sbjct 19593815 AATAGTCATCTGCAATGACACCTCGCCGTGATGATAGGCAGACTGCTCTGCCACAGAGCC 19593756 Query 117484 CGCCAGCTGAGCCACCTTCATGTCTGACGTCAG--GTTCTTCTTGAGGCAGGCATAAATC 117541 | || || ||||| || | || |||| | ||| ||||| ||| | | | || Sbjct 19593755 AGAGAGTTGTGCCACTTTAA--CCTCACGTTTGTCGTTACGCTTGAAGCAAGTAAACATA 19593698 Query 117542 ACCTTGCGCTGACTTGGCTTCAGACCATCCGCCA 117575 ||||||||||| | ||||| || |||||| ||| Sbjct 19593697 ACCTTGCGCTGTCCAGGCTTAAGGCCATCCACCA 19593664 Score = 95.1 bits (104), Expect = 1e-14 Identities = 123/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 ||||| || || || | ||| || |||||||||||||| || || || || ||||| Sbjct 19593934 GTGAATATATAACGAGCGCTAGCGCTATCCTTGCCACCTGTTAGACGTGTACCGAACTGA 19593875 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| |||||| || | || | ||||| | |||||| || ||||| |||||||| ||| Sbjct 19593874 CCACGGGGCTCTAGTAAATTAATATTGTTCGAGCCCACAAAGTTCTGTGCCAAATTGACA 19593815 Query 152149 ATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGC 152198 || || ||||| | | || ||||| ||||| || | |||||| || Sbjct 19593814 ATAGTCATCTGCAATGACACCTCGCCGTGATGATAGGCAGACTGCTCTGC 19593765 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215958958800