Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20busckii_20[refseq_20GCF_5F001277935.1_202015-09-02]
6 sequences; 135,748,557 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq1 138 1e-27
>seq1
Length=33300182
Score = 138 bits (152), Expect = 1e-27
Identities = 196/274 (72%), Gaps = 4/274 (1%)
Strand=Plus/Minus
Query 117304 AGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTG 117363
|||||| || ||||||| ||| || |||||||||||| | ||||| |||||||| ||
Sbjct 19593935 AGTGAATATATAACGAGCGCTAGCGCTATCCTTGCCACCTGTTAGACGTGTACCGAACTG 19593876
Query 117364 TCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGAC 117423
|||| ||||| | | || | ||||| | |||||||||||| || ||||| |||||
Sbjct 19593875 ACCACGGGGCTCTAGTAAATTAATATTGTTCGAGCCCACAAAGTTCTGTGCCAAATTGAC 19593816
Query 117424 AATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCC 117483
||| || || | | |||| || || ||||| || | |||||| ||||| ||||
Sbjct 19593815 AATAGTCATCTGCAATGACACCTCGCCGTGATGATAGGCAGACTGCTCTGCCACAGAGCC 19593756
Query 117484 CGCCAGCTGAGCCACCTTCATGTCTGACGTCAG--GTTCTTCTTGAGGCAGGCATAAATC 117541
| || || ||||| || | || |||| | ||| ||||| ||| | | | ||
Sbjct 19593755 AGAGAGTTGTGCCACTTTAA--CCTCACGTTTGTCGTTACGCTTGAAGCAAGTAAACATA 19593698
Query 117542 ACCTTGCGCTGACTTGGCTTCAGACCATCCGCCA 117575
||||||||||| | ||||| || |||||| |||
Sbjct 19593697 ACCTTGCGCTGTCCAGGCTTAAGGCCATCCACCA 19593664
Score = 95.1 bits (104), Expect = 1e-14
Identities = 123/170 (72%), Gaps = 0/170 (0%)
Strand=Plus/Minus
Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088
||||| || || || | ||| || |||||||||||||| || || || || |||||
Sbjct 19593934 GTGAATATATAACGAGCGCTAGCGCTATCCTTGCCACCTGTTAGACGTGTACCGAACTGA 19593875
Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148
||| |||||| || | || | ||||| | |||||| || ||||| |||||||| |||
Sbjct 19593874 CCACGGGGCTCTAGTAAATTAATATTGTTCGAGCCCACAAAGTTCTGTGCCAAATTGACA 19593815
Query 152149 ATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGC 152198
|| || ||||| | | || ||||| ||||| || | |||||| ||
Sbjct 19593814 ATAGTCATCTGCAATGACACCTCGCCGTGATGATAGGCAGACTGCTCTGC 19593765
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547215958958800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |