Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20busckii_20[refseq_20GCF_5F001277935.1_202015-09-02] 6 sequences; 135,748,557 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq5 127 1e-24 seq1 107 1e-18 seq3 105 4e-18 >seq5 Length=23724088 Score = 127 bits (140), Expect = 1e-24 Identities = 163/222 (73%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 |||||||||||||| ||||| || |||||| || ||||||||||| ||||| || || Sbjct 5413789 AGACGCAACACCAAGTGGAGGGTTGACTCCTTCTGGATGTTATAATCAGAAAGAGTACGT 5413730 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || ||||| || || || ||||| || |||||||| ||||| || || | |||||| Sbjct 5413729 CCATCCTCAAGCTGCTTGCCAGCAAAAATCAAACGCTGCTGGTCTGGGGGAATACCCTCC 5413670 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| ||| || | || || | ||| || || ||| ||||||| ||| Sbjct 5413669 TTGTC-CTGAATCTTGGCCTTGACATTCTCAATGGTATCAGAAGGCTCAACTTCCAAGGT 5413611 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709 || || || || ||||| ||||| || ||||||||||| || Sbjct 5413610 GATTGTCTTGCCAGTTAAAGTTTTGACGAAAATCTGCATCTT 5413569 Score = 96.9 bits (106), Expect = 2e-15 Identities = 155/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 |||||||||||||| ||||| || |||||| || ||||||||||| ||||| || || Sbjct 5414017 AGACGCAACACCAAGTGGAGGGTTGACTCCTTCTGGATGTTATAATCAGAAAGAGTACGT 5413958 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || || || || || || || || |||||||| || || || || | || ||| Sbjct 5413957 CCATCCTCCAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGATCTGGGGGAATACCTTCC 5413898 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| ||| || | |||||| | ||| || || | ||| || || | ||| Sbjct 5413897 TTGTC-CTGAATCTTGGCCTTAACGTTCTCAATGGTATCAGAGGGCTCAACCTCGAGGGT 5413839 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || || || || || || || || || || || |||||| Sbjct 5413838 GATGGTCTTGCCAGTCAAGGTCTTGACGAAGATTTGCATG 5413799 Score = 96.9 bits (106), Expect = 2e-15 Identities = 155/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 |||||||||||||| ||||| || |||||| || ||||||||||| ||||| || || Sbjct 5414245 AGACGCAACACCAAGTGGAGGGTTGACTCCTTCTGGATGTTATAATCAGAAAGAGTACGT 5414186 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || || || || || || || || |||||||| || || || || | || ||| Sbjct 5414185 CCATCCTCCAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGATCTGGGGGAATACCTTCC 5414126 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| ||| || | |||||| | ||| || || | ||| || || | ||| Sbjct 5414125 TTGTC-CTGAATCTTGGCCTTAACGTTCTCAATGGTATCAGAGGGCTCAACCTCGAGGGT 5414067 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || || || || || || || || || || || |||||| Sbjct 5414066 GATGGTCTTGCCAGTCAAGGTCTTGACGAAGATTTGCATG 5414027 Score = 91.5 bits (100), Expect = 9e-14 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | ||||||||| ||||||||||| || |||||| || || || || || ||| Sbjct 5414482 CCGCCGCGAAGACGCAAAACCAAATGGAGGGTTGACTCCTTCTGGATATTGTAGTCAGAA 5414423 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | || || || || || || || || || |||||||| || || || || Sbjct 5414422 AGAGTACGTCCATCCTCCAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGATCTGGGGGA 5414363 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | || |||||||| ||| || | |||||| | ||| || || | ||| || Sbjct 5414362 ATACCTTCCTTGTC-CTGAATCTTGGCCTTAACGTTCTCAATGGTATCAGAGGGCTCAAC 5414304 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || | ||| || || || || || || || || || || || |||||| Sbjct 5414303 CTCGAGGGTGATGGTCTTGCCAGTCAAGGTCTTGACGAAGATTTGCATG 5414255 >seq1 Length=33300182 Score = 107 bits (118), Expect = 1e-18 Identities = 159/223 (71%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||||| || ||||| |||||| || ||||| || || || || || || Sbjct 90667 AGACGGAGCACCAAGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTACGG 90726 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| || || || ||||| || || |||||||| || || || || | |||||| Sbjct 90727 CCATCTTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATTCCCTCT 90786 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| |||||| | || || | || ||||| | ||| || |||| ||| Sbjct 90787 TTGTCTTGGATCTTG-GCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACCTCCAAGGT 90845 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710 || || || ||||| | ||||||||||| || ||||| ||| Sbjct 90846 GATGGTCTTGCCGGTGAGGGTTTTCACAAAGATTTGCATCTTG 90888 Score = 107 bits (118), Expect = 1e-18 Identities = 159/223 (71%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||||| || ||||| |||||| || ||||| || || || || || || Sbjct 2542945 AGACGGAGCACCAAGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTACGG 2542886 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| || || || ||||| || || |||||||| || || || || | |||||| Sbjct 2542885 CCATCTTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATTCCCTCT 2542826 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| |||||| | || || | || ||||| | ||| || |||| ||| Sbjct 2542825 TTGTCTTGGATCTTG-GCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACCTCCAAGGT 2542767 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710 || || || ||||| | ||||||||||| || ||||| ||| Sbjct 2542766 GATGGTCTTGCCGGTGAGGGTTTTCACAAAGATTTGCATCTTG 2542724 Score = 82.4 bits (90), Expect = 5e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 || || | |||||| || || ||| |||||||||||| ||||| || || || || || Sbjct 5269459 AGGCGGAGCACCAAGTGCAGGGTGGACTCCTTTTGAATATTATAGTCGGACAGAGTACGA 5269400 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| | ||| || || || || |||||||| ||||| || || || | ||| || Sbjct 5269399 CCATCTTCCAATTGCTTGCCAGCGAAGATTAAACGTTGTTGATCTGGAGGAATTCCTTCT 5269340 Query 34609 TTGTC 34613 ||||| Sbjct 5269339 TTGTC 5269335 >seq3 Length=28180402 Score = 105 bits (116), Expect = 4e-18 Identities = 157/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||||| ||||| || |||||| |||||||| || || || || || || Sbjct 22369942 AGACGGAGCACCAAGTGGAGGGTTGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGT 22370001 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || | || || ||||| || || | |||||| ||||| || || | |||||| Sbjct 22370002 CCATCCTCCAACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCC 22370061 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| |||| || | || || | ||| ||||| | ||| || |||| ||| Sbjct 22370062 TTGTCTTGGATC-TTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCAACCTCCAAGGT 22370120 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || || || || || || || |||||||| ||||||||| Sbjct 22370121 GATGGTCTTGCCAGTCAATGTCTTCACAAAGATCTGCATG 22370160 Score = 95.1 bits (104), Expect = 8e-15 Identities = 154/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||||| ||||| || |||||| |||||||| || || || || || || Sbjct 22368802 AGACGGAGCACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGT 22368861 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || | || || ||||| || || | |||||| ||||| || || | |||||| Sbjct 22368862 CCATCCTCCAACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCC 22368921 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| |||| || | || || | ||| ||||| | ||| || |||| ||| Sbjct 22368922 TTGTCTTGGATC-TTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCAACCTCCAAGGT 22368980 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || || | || ||||| || |||||||| Sbjct 22368981 GATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 22369019 Score = 95.1 bits (104), Expect = 8e-15 Identities = 154/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||||| ||||| || |||||| |||||||| || || || || || || Sbjct 22369030 AGACGGAGCACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGT 22369089 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || | || || ||||| || || | |||||| ||||| || || | |||||| Sbjct 22369090 CCATCCTCCAACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCC 22369149 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| |||| || | || || | ||| ||||| | ||| || |||| ||| Sbjct 22369150 TTGTCTTGGATC-TTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCAACCTCCAAGGT 22369208 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || || | || ||||| || |||||||| Sbjct 22369209 GATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 22369247 Score = 95.1 bits (104), Expect = 8e-15 Identities = 154/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||||| ||||| || |||||| |||||||| || || || || || || Sbjct 22369258 AGACGGAGCACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGT 22369317 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || | || || ||||| || || | |||||| ||||| || || | |||||| Sbjct 22369318 CCATCCTCCAACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCC 22369377 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| |||| || | || || | ||| ||||| | ||| || |||| ||| Sbjct 22369378 TTGTCTTGGATC-TTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCAACCTCCAAGGT 22369436 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || || | || ||||| || |||||||| Sbjct 22369437 GATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 22369475 Score = 95.1 bits (104), Expect = 8e-15 Identities = 154/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||||| ||||| || |||||| |||||||| || || || || || || Sbjct 22369486 AGACGGAGCACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGT 22369545 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || | || || ||||| || || | |||||| ||||| || || | |||||| Sbjct 22369546 CCATCCTCCAACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCC 22369605 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| |||| || | || || | ||| ||||| | ||| || |||| ||| Sbjct 22369606 TTGTCTTGGATC-TTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCAACCTCCAAGGT 22369664 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || || | || ||||| || |||||||| Sbjct 22369665 GATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 22369703 Score = 95.1 bits (104), Expect = 8e-15 Identities = 154/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||||| ||||| || |||||| |||||||| || || || || || || Sbjct 22369714 AGACGGAGCACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGT 22369773 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || | || || ||||| || || | |||||| ||||| || || | |||||| Sbjct 22369774 CCATCCTCCAACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCC 22369833 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| |||| || | || || | ||| ||||| | ||| || |||| ||| Sbjct 22369834 TTGTCTTGGATC-TTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCAACCTCCAAGGT 22369892 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || || | || ||||| || |||||||| Sbjct 22369893 GATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 22369931 Score = 86.0 bits (94), Expect = 4e-12 Identities = 152/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||||| || || || |||||| |||||||| || || || || || || Sbjct 22368574 AGACGGAGAACCAAGTGAAGGGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGT 22368633 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || | || || ||||| || || | |||||| ||||| || || | |||||| Sbjct 22368634 CCATCCTCCAACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCC 22368693 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| |||| || | || || | ||| ||||| | ||| || |||| ||| Sbjct 22368694 TTGTCTTGGATC-TTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCAACCTCCAAGGT 22368752 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || || | || ||||| || |||||||| Sbjct 22368753 GATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 22368791 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314729576985398