Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20busckii_20[refseq_20GCF_5F001277935.1_202015-09-02]
6 sequences; 135,748,557 total letters
Query= NC_028491.1
Length=98392
Score E
Sequences producing significant alignments: (Bits) Value
seq5 127 1e-24
seq1 107 1e-18
seq3 105 4e-18
>seq5
Length=23724088
Score = 127 bits (140), Expect = 1e-24
Identities = 163/222 (73%), Gaps = 2/222 (1%)
Strand=Plus/Minus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
|||||||||||||| ||||| || |||||| || ||||||||||| ||||| || ||
Sbjct 5413789 AGACGCAACACCAAGTGGAGGGTTGACTCCTTCTGGATGTTATAATCAGAAAGAGTACGT 5413730
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
| || ||||| || || || ||||| || |||||||| ||||| || || | ||||||
Sbjct 5413729 CCATCCTCAAGCTGCTTGCCAGCAAAAATCAAACGCTGCTGGTCTGGGGGAATACCCTCC 5413670
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
||||| ||| || | || || | ||| || || ||| ||||||| |||
Sbjct 5413669 TTGTC-CTGAATCTTGGCCTTGACATTCTCAATGGTATCAGAAGGCTCAACTTCCAAGGT 5413611
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709
|| || || || ||||| ||||| || ||||||||||| ||
Sbjct 5413610 GATTGTCTTGCCAGTTAAAGTTTTGACGAAAATCTGCATCTT 5413569
Score = 96.9 bits (106), Expect = 2e-15
Identities = 155/220 (70%), Gaps = 2/220 (1%)
Strand=Plus/Minus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
|||||||||||||| ||||| || |||||| || ||||||||||| ||||| || ||
Sbjct 5414017 AGACGCAACACCAAGTGGAGGGTTGACTCCTTCTGGATGTTATAATCAGAAAGAGTACGT 5413958
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
| || || || || || || || || || |||||||| || || || || | || |||
Sbjct 5413957 CCATCCTCCAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGATCTGGGGGAATACCTTCC 5413898
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
||||| ||| || | |||||| | ||| || || | ||| || || | |||
Sbjct 5413897 TTGTC-CTGAATCTTGGCCTTAACGTTCTCAATGGTATCAGAGGGCTCAACCTCGAGGGT 5413839
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707
|| || || || || || || || || || || ||||||
Sbjct 5413838 GATGGTCTTGCCAGTCAAGGTCTTGACGAAGATTTGCATG 5413799
Score = 96.9 bits (106), Expect = 2e-15
Identities = 155/220 (70%), Gaps = 2/220 (1%)
Strand=Plus/Minus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
|||||||||||||| ||||| || |||||| || ||||||||||| ||||| || ||
Sbjct 5414245 AGACGCAACACCAAGTGGAGGGTTGACTCCTTCTGGATGTTATAATCAGAAAGAGTACGT 5414186
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
| || || || || || || || || || |||||||| || || || || | || |||
Sbjct 5414185 CCATCCTCCAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGATCTGGGGGAATACCTTCC 5414126
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
||||| ||| || | |||||| | ||| || || | ||| || || | |||
Sbjct 5414125 TTGTC-CTGAATCTTGGCCTTAACGTTCTCAATGGTATCAGAGGGCTCAACCTCGAGGGT 5414067
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707
|| || || || || || || || || || || ||||||
Sbjct 5414066 GATGGTCTTGCCAGTCAAGGTCTTGACGAAGATTTGCATG 5414027
Score = 91.5 bits (100), Expect = 9e-14
Identities = 159/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
||||| | ||||||||| ||||||||||| || |||||| || || || || || |||
Sbjct 5414482 CCGCCGCGAAGACGCAAAACCAAATGGAGGGTTGACTCCTTCTGGATATTGTAGTCAGAA 5414423
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
|| || || | || || || || || || || || || |||||||| || || || ||
Sbjct 5414422 AGAGTACGTCCATCCTCCAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGATCTGGGGGA 5414363
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658
| || |||||||| ||| || | |||||| | ||| || || | ||| ||
Sbjct 5414362 ATACCTTCCTTGTC-CTGAATCTTGGCCTTAACGTTCTCAATGGTATCAGAGGGCTCAAC 5414304
Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707
|| | ||| || || || || || || || || || || || ||||||
Sbjct 5414303 CTCGAGGGTGATGGTCTTGCCAGTCAAGGTCTTGACGAAGATTTGCATG 5414255
>seq1
Length=33300182
Score = 107 bits (118), Expect = 1e-18
Identities = 159/223 (71%), Gaps = 2/223 (1%)
Strand=Plus/Plus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||| | |||||| || ||||| |||||| || ||||| || || || || || ||
Sbjct 90667 AGACGGAGCACCAAGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTACGG 90726
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
| ||||| || || || ||||| || || |||||||| || || || || | ||||||
Sbjct 90727 CCATCTTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATTCCCTCT 90786
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
|||||| |||||| | || || | || ||||| | ||| || |||| |||
Sbjct 90787 TTGTCTTGGATCTTG-GCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACCTCCAAGGT 90845
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710
|| || || ||||| | ||||||||||| || ||||| |||
Sbjct 90846 GATGGTCTTGCCGGTGAGGGTTTTCACAAAGATTTGCATCTTG 90888
Score = 107 bits (118), Expect = 1e-18
Identities = 159/223 (71%), Gaps = 2/223 (1%)
Strand=Plus/Minus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||| | |||||| || ||||| |||||| || ||||| || || || || || ||
Sbjct 2542945 AGACGGAGCACCAAGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTACGG 2542886
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
| ||||| || || || ||||| || || |||||||| || || || || | ||||||
Sbjct 2542885 CCATCTTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATTCCCTCT 2542826
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
|||||| |||||| | || || | || ||||| | ||| || |||| |||
Sbjct 2542825 TTGTCTTGGATCTTG-GCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACCTCCAAGGT 2542767
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710
|| || || ||||| | ||||||||||| || ||||| |||
Sbjct 2542766 GATGGTCTTGCCGGTGAGGGTTTTCACAAAGATTTGCATCTTG 2542724
Score = 82.4 bits (90), Expect = 5e-11
Identities = 93/125 (74%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
|| || | |||||| || || ||| |||||||||||| ||||| || || || || ||
Sbjct 5269459 AGGCGGAGCACCAAGTGCAGGGTGGACTCCTTTTGAATATTATAGTCGGACAGAGTACGA 5269400
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
| ||||| | ||| || || || || |||||||| ||||| || || || | ||| ||
Sbjct 5269399 CCATCTTCCAATTGCTTGCCAGCGAAGATTAAACGTTGTTGATCTGGAGGAATTCCTTCT 5269340
Query 34609 TTGTC 34613
|||||
Sbjct 5269339 TTGTC 5269335
>seq3
Length=28180402
Score = 105 bits (116), Expect = 4e-18
Identities = 157/220 (71%), Gaps = 2/220 (1%)
Strand=Plus/Plus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||| | |||||| ||||| || |||||| |||||||| || || || || || ||
Sbjct 22369942 AGACGGAGCACCAAGTGGAGGGTTGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGT 22370001
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
| || || | || || ||||| || || | |||||| ||||| || || | ||||||
Sbjct 22370002 CCATCCTCCAACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCC 22370061
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
|||||| |||| || | || || | ||| ||||| | ||| || |||| |||
Sbjct 22370062 TTGTCTTGGATC-TTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCAACCTCCAAGGT 22370120
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707
|| || || || || || || |||||||| |||||||||
Sbjct 22370121 GATGGTCTTGCCAGTCAATGTCTTCACAAAGATCTGCATG 22370160
Score = 95.1 bits (104), Expect = 8e-15
Identities = 154/219 (70%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||| | |||||| ||||| || |||||| |||||||| || || || || || ||
Sbjct 22368802 AGACGGAGCACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGT 22368861
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
| || || | || || ||||| || || | |||||| ||||| || || | ||||||
Sbjct 22368862 CCATCCTCCAACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCC 22368921
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
|||||| |||| || | || || | ||| ||||| | ||| || |||| |||
Sbjct 22368922 TTGTCTTGGATC-TTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCAACCTCCAAGGT 22368980
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|| || || || || | || ||||| || ||||||||
Sbjct 22368981 GATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 22369019
Score = 95.1 bits (104), Expect = 8e-15
Identities = 154/219 (70%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||| | |||||| ||||| || |||||| |||||||| || || || || || ||
Sbjct 22369030 AGACGGAGCACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGT 22369089
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
| || || | || || ||||| || || | |||||| ||||| || || | ||||||
Sbjct 22369090 CCATCCTCCAACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCC 22369149
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
|||||| |||| || | || || | ||| ||||| | ||| || |||| |||
Sbjct 22369150 TTGTCTTGGATC-TTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCAACCTCCAAGGT 22369208
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|| || || || || | || ||||| || ||||||||
Sbjct 22369209 GATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 22369247
Score = 95.1 bits (104), Expect = 8e-15
Identities = 154/219 (70%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||| | |||||| ||||| || |||||| |||||||| || || || || || ||
Sbjct 22369258 AGACGGAGCACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGT 22369317
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
| || || | || || ||||| || || | |||||| ||||| || || | ||||||
Sbjct 22369318 CCATCCTCCAACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCC 22369377
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
|||||| |||| || | || || | ||| ||||| | ||| || |||| |||
Sbjct 22369378 TTGTCTTGGATC-TTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCAACCTCCAAGGT 22369436
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|| || || || || | || ||||| || ||||||||
Sbjct 22369437 GATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 22369475
Score = 95.1 bits (104), Expect = 8e-15
Identities = 154/219 (70%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||| | |||||| ||||| || |||||| |||||||| || || || || || ||
Sbjct 22369486 AGACGGAGCACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGT 22369545
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
| || || | || || ||||| || || | |||||| ||||| || || | ||||||
Sbjct 22369546 CCATCCTCCAACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCC 22369605
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
|||||| |||| || | || || | ||| ||||| | ||| || |||| |||
Sbjct 22369606 TTGTCTTGGATC-TTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCAACCTCCAAGGT 22369664
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|| || || || || | || ||||| || ||||||||
Sbjct 22369665 GATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 22369703
Score = 95.1 bits (104), Expect = 8e-15
Identities = 154/219 (70%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||| | |||||| ||||| || |||||| |||||||| || || || || || ||
Sbjct 22369714 AGACGGAGCACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGT 22369773
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
| || || | || || ||||| || || | |||||| ||||| || || | ||||||
Sbjct 22369774 CCATCCTCCAACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCC 22369833
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
|||||| |||| || | || || | ||| ||||| | ||| || |||| |||
Sbjct 22369834 TTGTCTTGGATC-TTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCAACCTCCAAGGT 22369892
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|| || || || || | || ||||| || ||||||||
Sbjct 22369893 GATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 22369931
Score = 86.0 bits (94), Expect = 4e-12
Identities = 152/219 (69%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||| | ||||| || || || |||||| |||||||| || || || || || ||
Sbjct 22368574 AGACGGAGAACCAAGTGAAGGGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGT 22368633
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
| || || | || || ||||| || || | |||||| ||||| || || | ||||||
Sbjct 22368634 CCATCCTCCAACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCC 22368693
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
|||||| |||| || | || || | ||| ||||| | ||| || |||| |||
Sbjct 22368694 TTGTCTTGGATC-TTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCAACCTCCAAGGT 22368752
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|| || || || || | || ||||| || ||||||||
Sbjct 22368753 GATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 22368791
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 314729576985398
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