Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20busckii_20[refseq_20GCF_5F001277935.1_202015-09-02] 6 sequences; 135,748,557 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq2 163 2e-35 seq1 152 4e-32 seq3 131 1e-25 seq5 123 2e-23 >seq2 Length=22510139 Score = 163 bits (180), Expect = 2e-35 Identities = 209/288 (73%), Gaps = 0/288 (0%) Strand=Plus/Plus Query 135476 TGGAACGCGGCACAACGGCAGCTTAAGCGAGAAGGCAAAATGCACGGATTTATGCGCATG 135535 |||||| |||| || | ||||||| || || ||||||||||| || ||| | |||||| Sbjct 17628671 TGGAACTCGGCGCAGCTGCAGCTTGTGCAGGAGGGCAAAATGCATGGCTTTTTACGCATG 17628730 Query 135536 TATTGGGCAAAAAAGATATTGGAATGGTCTGCATCGCCTGCAGAGGCGCTACAACACGCA 135595 |||||||| || || || | || ||| ||| | |||| ||| | | | || Sbjct 17628731 TATTGGGCCAAGAAAATTCTTGAGTGGACTGAGACTCCTGAGCTGGCTTTGGAGTATGCT 17628790 Query 135596 ATATTTTTTAATGATTACTACAGTTTAGATGGACGCGATTCAAATGGCTACGTAGGTTGT 135655 ||||| |||||||| | || ||| | ||||| || ||| | ||||| || || || || Sbjct 17628791 ATATTGCTTAATGATAAATATAGTCTCGATGGTCGTGATCCTAATGGTTATGTGGGCTGC 17628850 Query 135656 ATGTGGTCTATTTGCGGTGTACACGATCAAGGATGGAAGGAGCGCAAAGTGTTTGGCAAG 135715 |||||||| || |||| |||| |||||||| ||||| ||||| | ||||| ||| Sbjct 17628851 ATGTGGTCCATCGGCGGCATACATGATCAAGGTTGGAAAGAGCGTGCCATCTTTGGTAAG 17628910 Query 135716 ATTCGCTATATGAACTATGACGGTTGTACAAGAAAATTTAATGTAAAT 135763 |||||||||||||||||| | || || | | || ||| |||| ||| Sbjct 17628911 ATTCGCTATATGAACTATCAAGGCTGCAAGCGCAAGTTTGATGTGAAT 17628958 >seq1 Length=33300182 Score = 152 bits (168), Expect = 4e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || ||||| || || || ||| | || |||||||| || ||||| || Sbjct 5269242 ATGCAGATCTTCGTTAAAACCCTTACGGGTAAGACCATCACTCTTGAGGTCGAACCATCG 5269301 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | |||||| || ||||| ||||||||||| || || || |||||| Sbjct 5269302 GATACTATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCTCCAGATCAA 5269361 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || |||||||| | ||| ||||| ||||||||||| || || | ||||| || || Sbjct 5269362 CAACGTTTAATCTTCGCTGGCAAGCAATTGGAAGATGGTCGTACTCTGTCCGACTATAAT 5269421 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 |||||||||||||| ||| | || ||||| | || | || ||||| Sbjct 5269422 ATTCAAAAGGAGTCCACCCTGCACTTGGTGCTCCGCCTCCGTGGTGG 5269468 Score = 140 bits (154), Expect = 3e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| ||||| || ||||||||| | || || | || || || || || Sbjct 90884 ATGCAAATCTTTGTGAAAACCCTCACCGGCAAGACCATCACCTTGGAGGTCGAGCCCTCT 90825 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| ||||| || || ||||||||||| || || || || ||||| Sbjct 90824 GACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAAGAGGGAATTCCCCCAGATCAG 90765 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||||| || | ||||||||| || ||||||| | || | ||||| |||||| Sbjct 90764 CAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAAGATGGCCGTACTCTGTCCGACTACAAC 90705 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || ||||||||||| | || ||||| | ||| |||| ||||| || Sbjct 90704 ATCCAGAAGGAGTCGACTCTGCACTTGGTGCTCCGTCTGCGTGGTGGTAT 90655 Score = 140 bits (154), Expect = 3e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| ||||| || ||||||||| | || || | || || || || || Sbjct 2542728 ATGCAAATCTTTGTGAAAACCCTCACCGGCAAGACCATCACCTTGGAGGTCGAGCCCTCT 2542787 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| ||||| || || ||||||||||| || || || || ||||| Sbjct 2542788 GACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAAGAGGGAATTCCCCCAGATCAG 2542847 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||||| || | ||||||||| || ||||||| | || | ||||| |||||| Sbjct 2542848 CAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAAGATGGCCGTACTCTGTCCGACTACAAC 2542907 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || ||||||||||| | || ||||| | ||| |||| ||||| || Sbjct 2542908 ATCCAGAAGGAGTCGACTCTGCACTTGGTGCTCCGTCTGCGTGGTGGTAT 2542957 >seq3 Length=28180402 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || ||||| |||||| | || || | || || || || | Sbjct 22368791 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCTTGGAGGTTGAGCCCAGC 22368732 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| || || || || |||||||| || ||||| || || || || Sbjct 22368731 GACACCATTGAGAATGTGAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAG 22368672 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||||||||| || ||||| || | || | ||||| |||||| Sbjct 22368671 CAGCGTCTGATCTTCGCCGGCAAGCAGTTGGAGGATGGACGCACTCTGTCCGACTACAAC 22368612 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||||| |||||||| ||| | || |||||| | ||| |||| ||||| Sbjct 22368611 ATTCAGAAGGAGTCTACCCTTCACTTGGTTCTCCGTCTGCGTGGTGG 22368565 Score = 131 bits (144), Expect = 1e-25 Identities = 168/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 26986 CCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGT 27045 |||||||||| ||||| || || |||| |||||| | || || | || || || || Sbjct 22370161 CCATGCAGATCTTTGTGAAGACATTGACTGGCAAGACCATCACCTTGGAGGTTGAGCCCA 22370102 Query 27046 CCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATC 27105 |||| | ||||||| || || || || |||||||| || ||||| || || || | Sbjct 22370101 GCGACACCATTGAGAATGTGAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGACC 22370042 Query 27106 AACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACA 27165 | |||||| | || | ||||||||| || ||||| || | || | ||||| |||| Sbjct 22370041 AGCAGCGTCTGATCTTCGCCGGCAAGCAGTTGGAGGATGGACGCACTCTGTCCGACTACA 22369982 Query 27166 ACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||||| |||||||| ||| | || ||||| | ||| |||| ||||| || Sbjct 22369981 ACATTCAGAAGGAGTCAACCCTCCACTTGGTGCTCCGTCTGCGTGGTGGTAT 22369930 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || ||||| |||||| | || || | || || || || | Sbjct 22369019 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCTTGGAGGTTGAGCCCAGC 22368960 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| || || || || |||||||| || ||||| || || || || Sbjct 22368959 GACACCATTGAGAATGTGAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAG 22368900 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||||||||| || ||||| || | || | ||||| |||||| Sbjct 22368899 CAGCGTCTGATCTTCGCCGGCAAGCAGTTGGAGGATGGACGCACTCTGTCCGACTACAAC 22368840 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| |||||||| ||| | || ||||| | ||| |||| ||||| || Sbjct 22368839 ATTCAGAAGGAGTCTACCCTCCACTTGGTGCTCCGTCTGCGTGGTGGTAT 22368790 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || ||||| |||||| | || || | || || || || | Sbjct 22369247 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCTTGGAGGTTGAGCCCAGC 22369188 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| || || || || |||||||| || ||||| || || || || Sbjct 22369187 GACACCATTGAGAATGTGAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAG 22369128 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||||||||| || ||||| || | || | ||||| |||||| Sbjct 22369127 CAGCGTCTGATCTTCGCCGGCAAGCAGTTGGAGGATGGACGCACTCTGTCCGACTACAAC 22369068 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| |||||||| ||| | || ||||| | ||| |||| ||||| || Sbjct 22369067 ATTCAGAAGGAGTCTACCCTCCACTTGGTGCTCCGTCTGCGTGGTGGTAT 22369018 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || ||||| |||||| | || || | || || || || | Sbjct 22369475 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCTTGGAGGTTGAGCCCAGC 22369416 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| || || || || |||||||| || ||||| || || || || Sbjct 22369415 GACACCATTGAGAATGTGAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAG 22369356 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||||||||| || ||||| || | || | ||||| |||||| Sbjct 22369355 CAGCGTCTGATCTTCGCCGGCAAGCAGTTGGAGGATGGACGCACTCTGTCCGACTACAAC 22369296 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| |||||||| ||| | || ||||| | ||| |||| ||||| || Sbjct 22369295 ATTCAGAAGGAGTCTACCCTCCACTTGGTGCTCCGTCTGCGTGGTGGTAT 22369246 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || ||||| |||||| | || || | || || || || | Sbjct 22369703 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCTTGGAGGTTGAGCCCAGC 22369644 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| || || || || |||||||| || ||||| || || || || Sbjct 22369643 GACACCATTGAGAATGTGAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAG 22369584 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||||||||| || ||||| || | || | ||||| |||||| Sbjct 22369583 CAGCGTCTGATCTTCGCCGGCAAGCAGTTGGAGGATGGACGCACTCTGTCCGACTACAAC 22369524 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| |||||||| ||| | || ||||| | ||| |||| ||||| || Sbjct 22369523 ATTCAGAAGGAGTCTACCCTCCACTTGGTGCTCCGTCTGCGTGGTGGTAT 22369474 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || ||||| |||||| | || || | || || || || | Sbjct 22369931 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCTTGGAGGTTGAGCCCAGC 22369872 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| || || || || |||||||| || ||||| || || || || Sbjct 22369871 GACACCATTGAGAATGTGAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAG 22369812 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||||||||| || ||||| || | || | ||||| |||||| Sbjct 22369811 CAGCGTCTGATCTTCGCCGGCAAGCAGTTGGAGGATGGACGCACTCTGTCCGACTACAAC 22369752 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| |||||||| ||| | || ||||| | ||| |||| ||||| || Sbjct 22369751 ATTCAGAAGGAGTCTACCCTCCACTTGGTGCTCCGTCTGCGTGGTGGTAT 22369702 >seq5 Length=23724088 Score = 123 bits (136), Expect = 2e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| || || || || || |||| |||||| | || || || || || || || || Sbjct 5414255 CATGCAAATCTTCGTCAAGACCTTGACTGGCAAGACCATCACCCTCGAGGTTGAGCCCTC 5414314 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 || | ||||||| || || || ||||| ||||| ||||| || || || ||||| Sbjct 5414315 TGATACCATTGAGAACGTTAAGGCCAAGATTCAGGACAAGGAAGGTATTCCCCCAGATCA 5414374 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||||| || | ||| ||||| || |||| || | || |||| || ||||| Sbjct 5414375 GCAGCGTTTGATTTTCGCTGGCAAGCAGCTGGAGGATGGACGTACTCTTTCTGACTACAA 5414434 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||| ||| | ||||||||||||||| | || || || || Sbjct 5414435 TATCCAGAAGGAGTCAACCCTCCATTTGGTTTTGCGTCTTCGCGGCGGAAT 5414485 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434918367381120