Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20busckii_20[refseq_20GCF_5F001277935.1_202015-09-02]
6 sequences; 135,748,557 total letters
Query= NC_028636.1
Length=135952
Score E
Sequences producing significant alignments: (Bits) Value
seq2 163 2e-35
seq1 152 4e-32
seq3 131 1e-25
seq5 123 2e-23
>seq2
Length=22510139
Score = 163 bits (180), Expect = 2e-35
Identities = 209/288 (73%), Gaps = 0/288 (0%)
Strand=Plus/Plus
Query 135476 TGGAACGCGGCACAACGGCAGCTTAAGCGAGAAGGCAAAATGCACGGATTTATGCGCATG 135535
|||||| |||| || | ||||||| || || ||||||||||| || ||| | ||||||
Sbjct 17628671 TGGAACTCGGCGCAGCTGCAGCTTGTGCAGGAGGGCAAAATGCATGGCTTTTTACGCATG 17628730
Query 135536 TATTGGGCAAAAAAGATATTGGAATGGTCTGCATCGCCTGCAGAGGCGCTACAACACGCA 135595
|||||||| || || || | || ||| ||| | |||| ||| | | | ||
Sbjct 17628731 TATTGGGCCAAGAAAATTCTTGAGTGGACTGAGACTCCTGAGCTGGCTTTGGAGTATGCT 17628790
Query 135596 ATATTTTTTAATGATTACTACAGTTTAGATGGACGCGATTCAAATGGCTACGTAGGTTGT 135655
||||| |||||||| | || ||| | ||||| || ||| | ||||| || || || ||
Sbjct 17628791 ATATTGCTTAATGATAAATATAGTCTCGATGGTCGTGATCCTAATGGTTATGTGGGCTGC 17628850
Query 135656 ATGTGGTCTATTTGCGGTGTACACGATCAAGGATGGAAGGAGCGCAAAGTGTTTGGCAAG 135715
|||||||| || |||| |||| |||||||| ||||| ||||| | ||||| |||
Sbjct 17628851 ATGTGGTCCATCGGCGGCATACATGATCAAGGTTGGAAAGAGCGTGCCATCTTTGGTAAG 17628910
Query 135716 ATTCGCTATATGAACTATGACGGTTGTACAAGAAAATTTAATGTAAAT 135763
|||||||||||||||||| | || || | | || ||| |||| |||
Sbjct 17628911 ATTCGCTATATGAACTATCAAGGCTGCAAGCGCAAGTTTGATGTGAAT 17628958
>seq1
Length=33300182
Score = 152 bits (168), Expect = 4e-32
Identities = 170/227 (75%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| || || ||||| || || || ||| | || |||||||| || ||||| ||
Sbjct 5269242 ATGCAGATCTTCGTTAAAACCCTTACGGGTAAGACCATCACTCTTGAGGTCGAACCATCG 5269301
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
|| | || || | |||||| || ||||| ||||||||||| || || || ||||||
Sbjct 5269302 GATACTATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCTCCAGATCAA 5269361
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
|| |||||||| | ||| ||||| ||||||||||| || || | ||||| || ||
Sbjct 5269362 CAACGTTTAATCTTCGCTGGCAAGCAATTGGAAGATGGTCGTACTCTGTCCGACTATAAT 5269421
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214
|||||||||||||| ||| | || ||||| | || | || |||||
Sbjct 5269422 ATTCAAAAGGAGTCCACCCTGCACTTGGTGCTCCGCCTCCGTGGTGG 5269468
Score = 140 bits (154), Expect = 3e-28
Identities = 169/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
||||| || ||||| ||||| || ||||||||| | || || | || || || || ||
Sbjct 90884 ATGCAAATCTTTGTGAAAACCCTCACCGGCAAGACCATCACCTTGGAGGTCGAGCCCTCT 90825
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | || |||| ||||| || || ||||||||||| || || || || |||||
Sbjct 90824 GACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAAGAGGGAATTCCCCCAGATCAG 90765
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
|||||||| || | ||||||||| || ||||||| | || | ||||| ||||||
Sbjct 90764 CAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAAGATGGCCGTACTCTGTCCGACTACAAC 90705
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
|| || ||||||||||| | || ||||| | ||| |||| ||||| ||
Sbjct 90704 ATCCAGAAGGAGTCGACTCTGCACTTGGTGCTCCGTCTGCGTGGTGGTAT 90655
Score = 140 bits (154), Expect = 3e-28
Identities = 169/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
||||| || ||||| ||||| || ||||||||| | || || | || || || || ||
Sbjct 2542728 ATGCAAATCTTTGTGAAAACCCTCACCGGCAAGACCATCACCTTGGAGGTCGAGCCCTCT 2542787
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | || |||| ||||| || || ||||||||||| || || || || |||||
Sbjct 2542788 GACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAAGAGGGAATTCCCCCAGATCAG 2542847
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
|||||||| || | ||||||||| || ||||||| | || | ||||| ||||||
Sbjct 2542848 CAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAAGATGGCCGTACTCTGTCCGACTACAAC 2542907
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
|| || ||||||||||| | || ||||| | ||| |||| ||||| ||
Sbjct 2542908 ATCCAGAAGGAGTCGACTCTGCACTTGGTGCTCCGTCTGCGTGGTGGTAT 2542957
>seq3
Length=28180402
Score = 131 bits (144), Expect = 1e-25
Identities = 165/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| || || || || ||||| |||||| | || || | || || || || |
Sbjct 22368791 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCTTGGAGGTTGAGCCCAGC 22368732
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | ||||||| || || || || |||||||| || ||||| || || || ||
Sbjct 22368731 GACACCATTGAGAATGTGAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAG 22368672
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
|||||| | || | ||||||||| || ||||| || | || | ||||| ||||||
Sbjct 22368671 CAGCGTCTGATCTTCGCCGGCAAGCAGTTGGAGGATGGACGCACTCTGTCCGACTACAAC 22368612
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214
||||| |||||||| ||| | || |||||| | ||| |||| |||||
Sbjct 22368611 ATTCAGAAGGAGTCTACCCTTCACTTGGTTCTCCGTCTGCGTGGTGG 22368565
Score = 131 bits (144), Expect = 1e-25
Identities = 168/232 (72%), Gaps = 0/232 (0%)
Strand=Plus/Minus
Query 26986 CCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGT 27045
|||||||||| ||||| || || |||| |||||| | || || | || || || ||
Sbjct 22370161 CCATGCAGATCTTTGTGAAGACATTGACTGGCAAGACCATCACCTTGGAGGTTGAGCCCA 22370102
Query 27046 CCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATC 27105
|||| | ||||||| || || || || |||||||| || ||||| || || || |
Sbjct 22370101 GCGACACCATTGAGAATGTGAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGACC 22370042
Query 27106 AACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACA 27165
| |||||| | || | ||||||||| || ||||| || | || | ||||| ||||
Sbjct 22370041 AGCAGCGTCTGATCTTCGCCGGCAAGCAGTTGGAGGATGGACGCACTCTGTCCGACTACA 22369982
Query 27166 ACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
||||||| |||||||| ||| | || ||||| | ||| |||| ||||| ||
Sbjct 22369981 ACATTCAGAAGGAGTCAACCCTCCACTTGGTGCTCCGTCTGCGTGGTGGTAT 22369930
Score = 127 bits (140), Expect = 2e-24
Identities = 166/230 (72%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| || || || || ||||| |||||| | || || | || || || || |
Sbjct 22369019 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCTTGGAGGTTGAGCCCAGC 22368960
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | ||||||| || || || || |||||||| || ||||| || || || ||
Sbjct 22368959 GACACCATTGAGAATGTGAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAG 22368900
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
|||||| | || | ||||||||| || ||||| || | || | ||||| ||||||
Sbjct 22368899 CAGCGTCTGATCTTCGCCGGCAAGCAGTTGGAGGATGGACGCACTCTGTCCGACTACAAC 22368840
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
||||| |||||||| ||| | || ||||| | ||| |||| ||||| ||
Sbjct 22368839 ATTCAGAAGGAGTCTACCCTCCACTTGGTGCTCCGTCTGCGTGGTGGTAT 22368790
Score = 127 bits (140), Expect = 2e-24
Identities = 166/230 (72%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| || || || || ||||| |||||| | || || | || || || || |
Sbjct 22369247 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCTTGGAGGTTGAGCCCAGC 22369188
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | ||||||| || || || || |||||||| || ||||| || || || ||
Sbjct 22369187 GACACCATTGAGAATGTGAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAG 22369128
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
|||||| | || | ||||||||| || ||||| || | || | ||||| ||||||
Sbjct 22369127 CAGCGTCTGATCTTCGCCGGCAAGCAGTTGGAGGATGGACGCACTCTGTCCGACTACAAC 22369068
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
||||| |||||||| ||| | || ||||| | ||| |||| ||||| ||
Sbjct 22369067 ATTCAGAAGGAGTCTACCCTCCACTTGGTGCTCCGTCTGCGTGGTGGTAT 22369018
Score = 127 bits (140), Expect = 2e-24
Identities = 166/230 (72%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| || || || || ||||| |||||| | || || | || || || || |
Sbjct 22369475 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCTTGGAGGTTGAGCCCAGC 22369416
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | ||||||| || || || || |||||||| || ||||| || || || ||
Sbjct 22369415 GACACCATTGAGAATGTGAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAG 22369356
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
|||||| | || | ||||||||| || ||||| || | || | ||||| ||||||
Sbjct 22369355 CAGCGTCTGATCTTCGCCGGCAAGCAGTTGGAGGATGGACGCACTCTGTCCGACTACAAC 22369296
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
||||| |||||||| ||| | || ||||| | ||| |||| ||||| ||
Sbjct 22369295 ATTCAGAAGGAGTCTACCCTCCACTTGGTGCTCCGTCTGCGTGGTGGTAT 22369246
Score = 127 bits (140), Expect = 2e-24
Identities = 166/230 (72%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| || || || || ||||| |||||| | || || | || || || || |
Sbjct 22369703 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCTTGGAGGTTGAGCCCAGC 22369644
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | ||||||| || || || || |||||||| || ||||| || || || ||
Sbjct 22369643 GACACCATTGAGAATGTGAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAG 22369584
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
|||||| | || | ||||||||| || ||||| || | || | ||||| ||||||
Sbjct 22369583 CAGCGTCTGATCTTCGCCGGCAAGCAGTTGGAGGATGGACGCACTCTGTCCGACTACAAC 22369524
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
||||| |||||||| ||| | || ||||| | ||| |||| ||||| ||
Sbjct 22369523 ATTCAGAAGGAGTCTACCCTCCACTTGGTGCTCCGTCTGCGTGGTGGTAT 22369474
Score = 127 bits (140), Expect = 2e-24
Identities = 166/230 (72%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| || || || || ||||| |||||| | || || | || || || || |
Sbjct 22369931 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCTTGGAGGTTGAGCCCAGC 22369872
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | ||||||| || || || || |||||||| || ||||| || || || ||
Sbjct 22369871 GACACCATTGAGAATGTGAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAG 22369812
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
|||||| | || | ||||||||| || ||||| || | || | ||||| ||||||
Sbjct 22369811 CAGCGTCTGATCTTCGCCGGCAAGCAGTTGGAGGATGGACGCACTCTGTCCGACTACAAC 22369752
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
||||| |||||||| ||| | || ||||| | ||| |||| ||||| ||
Sbjct 22369751 ATTCAGAAGGAGTCTACCCTCCACTTGGTGCTCCGTCTGCGTGGTGGTAT 22369702
>seq5
Length=23724088
Score = 123 bits (136), Expect = 2e-23
Identities = 166/231 (72%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046
|||||| || || || || || |||| |||||| | || || || || || || || ||
Sbjct 5414255 CATGCAAATCTTCGTCAAGACCTTGACTGGCAAGACCATCACCCTCGAGGTTGAGCCCTC 5414314
Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106
|| | ||||||| || || || ||||| ||||| ||||| || || || |||||
Sbjct 5414315 TGATACCATTGAGAACGTTAAGGCCAAGATTCAGGACAAGGAAGGTATTCCCCCAGATCA 5414374
Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166
|||||||| || | ||| ||||| || |||| || | || |||| || |||||
Sbjct 5414375 GCAGCGTTTGATTTTCGCTGGCAAGCAGCTGGAGGATGGACGTACTCTTTCTGACTACAA 5414434
Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
|| || |||||||| ||| | ||||||||||||||| | || || || ||
Sbjct 5414435 TATCCAGAAGGAGTCAACCCTCCATTTGGTTTTGCGTCTTCGCGGCGGAAT 5414485
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 434918367381120
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