Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20busckii_20[refseq_20GCF_5F001277935.1_202015-09-02] 6 sequences; 135,748,557 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq1 122 8e-23 >seq1 Length=33300182 Score = 122 bits (134), Expect = 8e-23 Identities = 398/616 (65%), Gaps = 2/616 (0%) Strand=Plus/Plus Query 34168 GGGGACCCTCTCCGTGTTCGGCACACAGGCCCGATACAACCTTCGGGGCGAATTTCCGCT 34227 ||| || |||||| | |||||| |||| || | || || || ||||||||| Sbjct 20734448 GGGCACGCTCTCCATATTCGGCGCACAAATGCGTTTTGACATTAGGAATTCATTTCCGCT 20734507 Query 34228 GCTGACGACGAAACGTGTGTACTGGAAG-GGCGTGGTCGAGGAGCTGCTGTGGTTCGTGA 34286 |||||| || ||| || | || | | ||| | |||||||||| ||||||| || | Sbjct 20734508 GCTGACCACCAAAAAGGTATT-TGTACGCGGCATTATCGAGGAGCTTTTGTGGTTTGTTA 20734566 Query 34287 GGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACG 34346 || || || ||||| ||| | | | ||| || ||||| || || Sbjct 20734567 AAGGCCAGACCAATGCCAAGTTGCTGCAGGCAAAGAACGTGCGCATTTGGGATGCCAACA 20734626 Query 34347 GGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCC 34406 | ||| || ||||| || || | || || || ||||| || || ||||| | Sbjct 20734627 GCAATCGTGAGTTTCTTGATAAATGCGGCTTTGTGGACCGTGAGGAAGGTGATTTGGGTC 20734686 Query 34407 CGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGGAGCGAAGCGGACT 34466 | || || || ||||||||| | |||||||| ||||||||||| | | | || | Sbjct 20734687 CCGTGTATGGTTTCCAGTGGCGTCACTTTGGTGCGGAGTATCGCACCTGTAATGATGAAT 20734746 Query 34467 ATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACCTTGAAGCGGAACCCTG 34526 | || || || || ||||| ||| | || || | |||||| ||| || Sbjct 20734747 ACAGCGGCCAAGGCATTGATCAGCTCCAGGAGGTTATTAATACCTTGCGCAAGAATCCAA 20734806 Query 34527 ATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGATGGCGCTCC 34586 ||| | | ||| | |||| ||| ||||| || | ||| | || ||||| || | Sbjct 20734807 CTGATCGTCGCATCATAATGTCCGCCTGGAATCCCATTGATATACCCAAAATGGCACTGC 20734866 Query 34587 CCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTGTCCTGCCAGCTCT 34646 | || |||||| ||| || ||||| || || ||||| || || ||||| ||||| | Sbjct 20734867 CGCCTTGCCACTGCCTGGTGCAGTTCTATGTGGCCAATGGTGAACTCTCCTGTCAGCTTT 20734926 Query 34647 ATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAGTTACGCTCTGC 34706 ||||||| | |||||||| | || || || ||||||||||| || || | | Sbjct 20734927 ATCAACGCAGCGCCGACATGGGACTGGGAGTTCCCTTCAACATTGCATCCTATGCGTTTC 20734986 Query 34707 TCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTGGGGAGCTGGTGCATACGTTGG 34766 | || || ||||| || ||||| ||| ||| | || || | | |||||| | | Sbjct 20734987 TTACCTATATGATAGCCCATGTAACGGGCTTGAAGACAGGCGACTTTATCCATACGCTTG 20735046 Query 34767 GGGATGCGCATATCTA 34782 | ||||| ||| |||| Sbjct 20735047 GCGATGCTCATGTCTA 20735062 Score = 122 bits (134), Expect = 8e-23 Identities = 398/616 (65%), Gaps = 2/616 (0%) Strand=Plus/Minus Query 6563 TAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCAACCCCACGACATGA 6622 |||| ||| ||||| || | |||||| | | || || | ||| ||| ||||| Sbjct 20735062 TAGACATGAGCATCGCCAAGCGTATGGATAAAGTCGCCTGTCTTCAAGCCCGTTACATGG 20735003 Query 6623 GCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCCATG 6682 || ||||| || || || | || || ||||||||||| || || || | |||||| Sbjct 20735002 GCTATCATATAGGTAAGAAACGCATAGGATGCAATGTTGAAGGGAACTCCCAGTCCCATG 20734943 Query 6683 TCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGGCAG 6742 || | |||||||| ||||| ||||| || || ||||| || || ||||| || Sbjct 20734942 TCGGCGCTGCGTTGATAAAGCTGACAGGAGAGTTCACCATTGGCCACATAGAACTGCACC 20734883 Query 6743 AGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCGCACATC 6802 ||| |||||| || || || ||||| || | ||| | || ||||| ||| |||| Sbjct 20734882 AGGCAGTGGCAAGGCGGCAGTGCCATTTTGGGTATATCAATGGGATTCCAGGCGGACATT 20734823 Query 6803 ACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACTGCAGCTGGTCC 6862 | ||| | | ||| || ||| |||||| | || || | ||| ||||| || Sbjct 20734822 ATGATGCGACGATCAGTTGGATTCTTGCGCAAGGTATTAATAACCTCCTGGAGCTGATCA 20734763 Query 6863 GCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCCGCCCCAAAGTGTCTCCAC 6922 || || || || || | | | ||||||||||| |||||||| | |||| Sbjct 20734762 ATGCCTTGGCCGCTGTATTCATCATTACAGGTGCGATACTCCGCACCAAAGTGACGCCAC 20734703 Query 6923 TGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGAACCCCCGCTTGTCC 6982 ||||| || || || || ||||| || || ||||| || || || | || || Sbjct 20734702 TGGAAACCATACACGGGACCCAAATCACCTTCCTCACGGTCCACAAAGCCGCATTTATCA 20734643 Query 6983 AGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCCCCGGGACGAGAGCTCCTTG 7042 ||||| || ||| | || || ||||| || ||| | | | ||| |||| Sbjct 20734642 AGAAACTCACGATTGCTGTTGGCATCCCAAATGCGCACGTTCTTTGCCTGCAGCAACTTG 20734583 Query 7043 GTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTCGACCACGCC-CTTCCAGTACAC 7101 | || || || | || ||||||| |||||||||| | ||| | | || | || Sbjct 20734582 GCATTGGTCTGGCCTTTAACAAACCACAAAAGCTCCTCGATAATGCCGCGTACA-AATAC 20734524 Query 7102 ACGTTTCGTCGTCAGCAGCGGAAATTCGCCCCGAAGGTTGTATCGGGCCTGTGTGCCGAA 7161 ||| || ||||||||||||||| || || || | || |||| |||||| Sbjct 20734523 CTTTTTGGTGGTCAGCAGCGGAAATGAATTCCTAATGTCAAAACGCATTTGTGCGCCGAA 20734464 Query 7162 CACGGAGAGGGTCCCC 7177 | |||||| || ||| Sbjct 20734463 TATGGAGAGCGTGCCC 20734448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448262366380320