Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20busckii_20[refseq_20GCF_5F001277935.1_202015-09-02]
6 sequences; 135,748,557 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq5 156 1e-32
seq1 149 1e-30
>seq5
Length=23724088
Score = 156 bits (172), Expect = 1e-32
Identities = 157/204 (77%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTG 210970
||| || || ||||| || |||||||||||||| | ||| || | |||||| ||||||||
Sbjct 5414003 GTGGAGGGTTGACTCCTTCTGGATGTTATAATCAGAAAGAGTACGTCCATCCTCCAGCTG 5413944
Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030
|||||| ||||| || | || || || || || |||| |||||||||||||| |||||
Sbjct 5413943 CTTGCCAGCGAAAATCAAACGCTGCTGATCTGGGGGAATACCTTCCTTGTCCTGAATCTT 5413884
Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090
|| ||||| || ||||| |||||| ||||||||||| ||||| ||||| || ||
Sbjct 5413883 GGCCTTAACGTTCTCAATGGTATCAGAGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGT 5413824
Query 211091 GAGAGTCTTTACAAACACCTGCAT 211114
| ||||| || || | |||||
Sbjct 5413823 CAAGGTCTTGACGAAGATTTGCAT 5413800
Score = 156 bits (172), Expect = 1e-32
Identities = 157/204 (77%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTG 210970
||| || || ||||| || |||||||||||||| | ||| || | |||||| ||||||||
Sbjct 5414231 GTGGAGGGTTGACTCCTTCTGGATGTTATAATCAGAAAGAGTACGTCCATCCTCCAGCTG 5414172
Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030
|||||| ||||| || | || || || || || |||| |||||||||||||| |||||
Sbjct 5414171 CTTGCCAGCGAAAATCAAACGCTGCTGATCTGGGGGAATACCTTCCTTGTCCTGAATCTT 5414112
Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090
|| ||||| || ||||| |||||| ||||||||||| ||||| ||||| || ||
Sbjct 5414111 GGCCTTAACGTTCTCAATGGTATCAGAGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGT 5414052
Query 211091 GAGAGTCTTTACAAACACCTGCAT 211114
| ||||| || || | |||||
Sbjct 5414051 CAAGGTCTTGACGAAGATTTGCAT 5414028
Score = 141 bits (156), Expect = 2e-28
Identities = 153/203 (75%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971
|| || || ||||| || ||||| || || || | ||| || | |||||| |||||||||
Sbjct 5414458 TGGAGGGTTGACTCCTTCTGGATATTGTAGTCAGAAAGAGTACGTCCATCCTCCAGCTGC 5414399
Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031
||||| ||||| || | || || || || || |||| |||||||||||||| |||||
Sbjct 5414398 TTGCCAGCGAAAATCAAACGCTGCTGATCTGGGGGAATACCTTCCTTGTCCTGAATCTTG 5414339
Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091
|| ||||| || ||||| |||||| ||||||||||| ||||| ||||| || ||
Sbjct 5414338 GCCTTAACGTTCTCAATGGTATCAGAGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGTC 5414279
Query 211092 AGAGTCTTTACAAACACCTGCAT 211114
| ||||| || || | |||||
Sbjct 5414278 AAGGTCTTGACGAAGATTTGCAT 5414256
Score = 131 bits (144), Expect = 4e-25
Identities = 153/207 (74%), Gaps = 0/207 (0%)
Strand=Plus/Minus
Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTG 210970
||| || || ||||| || |||||||||||||| | ||| || | |||||| || |||||
Sbjct 5413775 GTGGAGGGTTGACTCCTTCTGGATGTTATAATCAGAAAGAGTACGTCCATCCTCAAGCTG 5413716
Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030
|||||| || || || | || || ||||| || |||| || ||||||||||| |||||
Sbjct 5413715 CTTGCCAGCAAAAATCAAACGCTGCTGGTCTGGGGGAATACCCTCCTTGTCCTGAATCTT 5413656
Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090
|| || || || ||||| ||||| ||||| || | ||||| ||||| || ||
Sbjct 5413655 GGCCTTGACATTCTCAATGGTATCAGAAGGCTCAACTTCCAAGGTGATTGTCTTGCCAGT 5413596
Query 211091 GAGAGTCTTTACAAACACCTGCATTTT 211117
| ||| || || || | |||||| ||
Sbjct 5413595 TAAAGTTTTGACGAAAATCTGCATCTT 5413569
>seq1
Length=33300182
Score = 149 bits (164), Expect = 1e-30
Identities = 162/215 (75%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| || | ||| ||||| ||||| || |||||||| || || | || || | ||||||
Sbjct 90673 AGCACCAAGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTACGGCCATCT 90732
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|||||||||||||| |||||||| | || || || || || |||| ||| || |||||
Sbjct 90733 TCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATTCCCTCTTTGTCT 90792
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|||||||| || || || ||||||||||||||| || ||||| | ||||| |||
Sbjct 90793 TGGATCTTGGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACCTCCAAGGTGATGGTC 90852
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117
|| || ||||| || || ||||| | ||||| ||
Sbjct 90853 TTGCCGGTGAGGGTTTTCACAAAGATTTGCATCTT 90887
Score = 149 bits (164), Expect = 1e-30
Identities = 162/215 (75%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| || | ||| ||||| ||||| || |||||||| || || | || || | ||||||
Sbjct 2542939 AGCACCAAGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTACGGCCATCT 2542880
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|||||||||||||| |||||||| | || || || || || |||| ||| || |||||
Sbjct 2542879 TCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATTCCCTCTTTGTCT 2542820
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|||||||| || || || ||||||||||||||| || ||||| | ||||| |||
Sbjct 2542819 TGGATCTTGGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACCTCCAAGGTGATGGTC 2542760
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117
|| || ||||| || || ||||| | ||||| ||
Sbjct 2542759 TTGCCGGTGAGGGTTTTCACAAAGATTTGCATCTT 2542725
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1159151910890190
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |