Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20busckii_20[refseq_20GCF_5F001277935.1_202015-09-02] 6 sequences; 135,748,557 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq5 156 1e-32 seq1 149 1e-30 >seq5 Length=23724088 Score = 156 bits (172), Expect = 1e-32 Identities = 157/204 (77%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTG 210970 ||| || || ||||| || |||||||||||||| | ||| || | |||||| |||||||| Sbjct 5414003 GTGGAGGGTTGACTCCTTCTGGATGTTATAATCAGAAAGAGTACGTCCATCCTCCAGCTG 5413944 Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 |||||| ||||| || | || || || || || |||| |||||||||||||| ||||| Sbjct 5413943 CTTGCCAGCGAAAATCAAACGCTGCTGATCTGGGGGAATACCTTCCTTGTCCTGAATCTT 5413884 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 || ||||| || ||||| |||||| ||||||||||| ||||| ||||| || || Sbjct 5413883 GGCCTTAACGTTCTCAATGGTATCAGAGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGT 5413824 Query 211091 GAGAGTCTTTACAAACACCTGCAT 211114 | ||||| || || | ||||| Sbjct 5413823 CAAGGTCTTGACGAAGATTTGCAT 5413800 Score = 156 bits (172), Expect = 1e-32 Identities = 157/204 (77%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTG 210970 ||| || || ||||| || |||||||||||||| | ||| || | |||||| |||||||| Sbjct 5414231 GTGGAGGGTTGACTCCTTCTGGATGTTATAATCAGAAAGAGTACGTCCATCCTCCAGCTG 5414172 Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 |||||| ||||| || | || || || || || |||| |||||||||||||| ||||| Sbjct 5414171 CTTGCCAGCGAAAATCAAACGCTGCTGATCTGGGGGAATACCTTCCTTGTCCTGAATCTT 5414112 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 || ||||| || ||||| |||||| ||||||||||| ||||| ||||| || || Sbjct 5414111 GGCCTTAACGTTCTCAATGGTATCAGAGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGT 5414052 Query 211091 GAGAGTCTTTACAAACACCTGCAT 211114 | ||||| || || | ||||| Sbjct 5414051 CAAGGTCTTGACGAAGATTTGCAT 5414028 Score = 141 bits (156), Expect = 2e-28 Identities = 153/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 || || || ||||| || ||||| || || || | ||| || | |||||| ||||||||| Sbjct 5414458 TGGAGGGTTGACTCCTTCTGGATATTGTAGTCAGAAAGAGTACGTCCATCCTCCAGCTGC 5414399 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 ||||| ||||| || | || || || || || |||| |||||||||||||| ||||| Sbjct 5414398 TTGCCAGCGAAAATCAAACGCTGCTGATCTGGGGGAATACCTTCCTTGTCCTGAATCTTG 5414339 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 || ||||| || ||||| |||||| ||||||||||| ||||| ||||| || || Sbjct 5414338 GCCTTAACGTTCTCAATGGTATCAGAGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGTC 5414279 Query 211092 AGAGTCTTTACAAACACCTGCAT 211114 | ||||| || || | ||||| Sbjct 5414278 AAGGTCTTGACGAAGATTTGCAT 5414256 Score = 131 bits (144), Expect = 4e-25 Identities = 153/207 (74%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTG 210970 ||| || || ||||| || |||||||||||||| | ||| || | |||||| || ||||| Sbjct 5413775 GTGGAGGGTTGACTCCTTCTGGATGTTATAATCAGAAAGAGTACGTCCATCCTCAAGCTG 5413716 Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 |||||| || || || | || || ||||| || |||| || ||||||||||| ||||| Sbjct 5413715 CTTGCCAGCAAAAATCAAACGCTGCTGGTCTGGGGGAATACCCTCCTTGTCCTGAATCTT 5413656 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 || || || || ||||| ||||| ||||| || | ||||| ||||| || || Sbjct 5413655 GGCCTTGACATTCTCAATGGTATCAGAAGGCTCAACTTCCAAGGTGATTGTCTTGCCAGT 5413596 Query 211091 GAGAGTCTTTACAAACACCTGCATTTT 211117 | ||| || || || | |||||| || Sbjct 5413595 TAAAGTTTTGACGAAAATCTGCATCTT 5413569 >seq1 Length=33300182 Score = 149 bits (164), Expect = 1e-30 Identities = 162/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| ||||| ||||| || |||||||| || || | || || | |||||| Sbjct 90673 AGCACCAAGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTACGGCCATCT 90732 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| |||||||| | || || || || || |||| ||| || ||||| Sbjct 90733 TCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATTCCCTCTTTGTCT 90792 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || ||||||||||||||| || ||||| | ||||| ||| Sbjct 90793 TGGATCTTGGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACCTCCAAGGTGATGGTC 90852 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || ||||| || || ||||| | ||||| || Sbjct 90853 TTGCCGGTGAGGGTTTTCACAAAGATTTGCATCTT 90887 Score = 149 bits (164), Expect = 1e-30 Identities = 162/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| ||||| ||||| || |||||||| || || | || || | |||||| Sbjct 2542939 AGCACCAAGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTACGGCCATCT 2542880 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| |||||||| | || || || || || |||| ||| || ||||| Sbjct 2542879 TCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATTCCCTCTTTGTCT 2542820 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || ||||||||||||||| || ||||| | ||||| ||| Sbjct 2542819 TGGATCTTGGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACCTCCAAGGTGATGGTC 2542760 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || ||||| || || ||||| | ||||| || Sbjct 2542759 TTGCCGGTGAGGGTTTTCACAAAGATTTGCATCTT 2542725 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159151910890190