Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20busckii_20[refseq_20GCF_5F001277935.1_202015-09-02]
6 sequences; 135,748,557 total letters
Query= NC_029996.1
Length=134272
Score E
Sequences producing significant alignments: (Bits) Value
seq5 96.9 3e-15
seq3 86.0 5e-12
seq1 82.4 7e-11
>seq5
Length=23724088
Score = 96.9 bits (106), Expect = 3e-15
Identities = 152/218 (70%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129
|| |||||||| || || || ||| || || || |||||||| | ||| || ||| |
Sbjct 5413786 CGCAACACCAAGTGGAGGGTTGACTCCTTCTGGATGTTATAATCAGAAAGAGTACGTCCA 5413727
Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189
|| |||||||| ||||| ||||| || | |||||||||||| | ||| | | ||| |||
Sbjct 5413726 TCCTCAAGCTGCTTGCCAGCAAAAATCAAACGCTGCTGGTCTGGGGGAATACCCTCCTTG 5413667
Query 39190 TCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATA 39249
||| || || |||| || | | ||||| | ||| || |||| |||||
Sbjct 5413666 TCCTGAATCTTGGCCTTGACATTCTCAATGGTATCAGAAGGCTCAACTTCCAAGGTGATT 5413607
Query 39250 CTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287
| || || || | ||||| || || || ||||||||
Sbjct 5413606 GTCTTGCCAGTTAAAGTTTTGACGAAAATCTGCATCTT 5413569
>seq3
Length=28180402
Score = 86.0 bits (94), Expect = 5e-12
Identities = 145/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134
|||||| || || || ||| || || || || || |||| || || ||| | || ||
Sbjct 22368810 CACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCATCCTC 22368869
Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194
| ||| ||||| || || || |||||||||||||| | ||| | || ||| |||||
Sbjct 22368870 CAACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTG 22368929
Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254
||| || || | || | | || ||||| | ||| || |||| ||||| | ||
Sbjct 22368930 GATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCAACCTCCAAGGTGATGGTCTT 22368989
Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
|| ||||| || || || ||||| |||||
Sbjct 22368990 GCCAGTCAGGGTCTTCACGAAGATCTGCAT 22369019
Score = 86.0 bits (94), Expect = 5e-12
Identities = 145/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134
|||||| || || || ||| || || || || || |||| || || ||| | || ||
Sbjct 22369038 CACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCATCCTC 22369097
Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194
| ||| ||||| || || || |||||||||||||| | ||| | || ||| |||||
Sbjct 22369098 CAACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTG 22369157
Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254
||| || || | || | | || ||||| | ||| || |||| ||||| | ||
Sbjct 22369158 GATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCAACCTCCAAGGTGATGGTCTT 22369217
Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
|| ||||| || || || ||||| |||||
Sbjct 22369218 GCCAGTCAGGGTCTTCACGAAGATCTGCAT 22369247
Score = 86.0 bits (94), Expect = 5e-12
Identities = 145/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134
|||||| || || || ||| || || || || || |||| || || ||| | || ||
Sbjct 22369266 CACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCATCCTC 22369325
Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194
| ||| ||||| || || || |||||||||||||| | ||| | || ||| |||||
Sbjct 22369326 CAACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTG 22369385
Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254
||| || || | || | | || ||||| | ||| || |||| ||||| | ||
Sbjct 22369386 GATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCAACCTCCAAGGTGATGGTCTT 22369445
Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
|| ||||| || || || ||||| |||||
Sbjct 22369446 GCCAGTCAGGGTCTTCACGAAGATCTGCAT 22369475
Score = 86.0 bits (94), Expect = 5e-12
Identities = 145/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134
|||||| || || || ||| || || || || || |||| || || ||| | || ||
Sbjct 22369494 CACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCATCCTC 22369553
Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194
| ||| ||||| || || || |||||||||||||| | ||| | || ||| |||||
Sbjct 22369554 CAACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTG 22369613
Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254
||| || || | || | | || ||||| | ||| || |||| ||||| | ||
Sbjct 22369614 GATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCAACCTCCAAGGTGATGGTCTT 22369673
Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
|| ||||| || || || ||||| |||||
Sbjct 22369674 GCCAGTCAGGGTCTTCACGAAGATCTGCAT 22369703
Score = 86.0 bits (94), Expect = 5e-12
Identities = 145/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134
|||||| || || || ||| || || || || || |||| || || ||| | || ||
Sbjct 22369722 CACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCATCCTC 22369781
Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194
| ||| ||||| || || || |||||||||||||| | ||| | || ||| |||||
Sbjct 22369782 CAACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTG 22369841
Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254
||| || || | || | | || ||||| | ||| || |||| ||||| | ||
Sbjct 22369842 GATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCAACCTCCAAGGTGATGGTCTT 22369901
Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
|| ||||| || || || ||||| |||||
Sbjct 22369902 GCCAGTCAGGGTCTTCACGAAGATCTGCAT 22369931
Score = 86.0 bits (94), Expect = 5e-12
Identities = 145/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134
|||||| || || || ||| || || || || || |||| || || ||| | || ||
Sbjct 22369950 CACCAAGTGGAGGGTTGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCATCCTC 22370009
Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194
| ||| ||||| || || || |||||||||||||| | ||| | || ||| |||||
Sbjct 22370010 CAACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTG 22370069
Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254
||| || || | || | | || ||||| | ||| || |||| ||||| | ||
Sbjct 22370070 GATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCAACCTCCAAGGTGATGGTCTT 22370129
Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
|| |||| || || |||||||| |||||
Sbjct 22370130 GCCAGTCAATGTCTTCACAAAGATCTGCAT 22370159
Score = 84.2 bits (92), Expect = 2e-11
Identities = 144/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135
||||| || || || ||| || || || || || |||| || || ||| | || ||
Sbjct 22368583 ACCAAGTGAAGGGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCATCCTCC 22368642
Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195
| ||| ||||| || || || |||||||||||||| | ||| | || ||| ||||| |
Sbjct 22368643 AACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGG 22368702
Query 39196 ATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTT 39255
|| || || | || | | || ||||| | ||| || |||| ||||| | ||
Sbjct 22368703 ATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCAACCTCCAAGGTGATGGTCTTG 22368762
Query 39256 CCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
|| ||||| || || || ||||| |||||
Sbjct 22368763 CCAGTCAGGGTCTTCACGAAGATCTGCAT 22368791
>seq1
Length=33300182
Score = 82.4 bits (90), Expect = 7e-11
Identities = 146/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134
|||||| || || || ||| || || || || || |||| || || || | || ||
Sbjct 90675 CACCAAGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTACGGCCATCTTC 90734
Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194
||||| ||||| || || || | ||||||||| || | ||| | | |||||||||
Sbjct 90735 CAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATTCCCTCTTTGTCTTG 90794
Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254
||| || |||| || | | || || | ||| || |||| ||||| | ||
Sbjct 90795 GATCTTGGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACCTCCAAGGTGATGGTCTT 90854
Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287
|| || || ||||| |||||||||||||||||
Sbjct 90855 GCCGGTGAGGGTTTTCACAAAGATTTGCATCTT 90887
Score = 82.4 bits (90), Expect = 7e-11
Identities = 146/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134
|||||| || || || ||| || || || || || |||| || || || | || ||
Sbjct 2542937 CACCAAGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTACGGCCATCTTC 2542878
Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194
||||| ||||| || || || | ||||||||| || | ||| | | |||||||||
Sbjct 2542877 CAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATTCCCTCTTTGTCTTG 2542818
Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254
||| || |||| || | | || || | ||| || |||| ||||| | ||
Sbjct 2542817 GATCTTGGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACCTCCAAGGTGATGGTCTT 2542758
Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287
|| || || ||||| |||||||||||||||||
Sbjct 2542757 GCCGGTGAGGGTTTTCACAAAGATTTGCATCTT 2542725
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429545568589478
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