Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20busckii_20[refseq_20GCF_5F001277935.1_202015-09-02]
6 sequences; 135,748,557 total letters
Query= NC_029997.1
Length=105667
Score E
Sequences producing significant alignments: (Bits) Value
seq1 138 8e-28
seq5 95.1 8e-15
>seq1
Length=33300182
Score = 138 bits (152), Expect = 8e-28
Identities = 151/201 (75%), Gaps = 0/201 (0%)
Strand=Plus/Plus
Query 23607 TAAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTC 23666
||| |||||||| |||||||||||||| ||||| || || |||||||| || || || |
Sbjct 5269238 TAAGATGCAGATCTTCGTTAAAACCCTTACGGGTAAGACCATCACTCTTGAGGTCGAACC 5269297
Query 23667 CACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726
|||| ||| | |||| | ||| || ||| ||||||||||| | || |||||
Sbjct 5269298 ATCGGATACTATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCTCCAGA 5269357
Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786
|||||| |||||||| || || ||||| ||| ||||||| | || ||| | ||| ||
Sbjct 5269358 TCAACAACGTTTAATCTTCGCTGGCAAGCAATTGGAAGATGGTCGTACTCTGTCCGACTA 5269417
Query 23787 CAACATACAAAAAGAGTCCAC 23807
|| || ||||| ||||||||
Sbjct 5269418 TAATATTCAAAAGGAGTCCAC 5269438
Score = 98.7 bits (108), Expect = 7e-16
Identities = 144/201 (72%), Gaps = 2/201 (1%)
Strand=Plus/Minus
Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667
|| ||||| || || || ||||||||||| || || || ||||| | || || || ||
Sbjct 90887 AAGATGCAAATCTTTGTGAAAACCCTCACCGGCAAGACCATCACCTTGGAGGTCGAGCCC 90828
Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726
| ||||| | || ||| | || | || || |||||||| || | || |||||
Sbjct 90827 TCTGACACCATCGAGAATGTCAAGGC-CAAGATCCAAGACAAAGAGGGAATTCCCCCAGA 90769
Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786
||| |||||||| || || |||||||| || |||||||| | || ||| | ||| ||
Sbjct 90768 TCAGCAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAAGATGGCCGTACTCTGTCCGACTA 90709
Query 23787 CAACATACAAAAAGAGTCCAC 23807
|||||| || || ||||| ||
Sbjct 90708 CAACATCCAGAAGGAGTCGAC 90688
Score = 98.7 bits (108), Expect = 7e-16
Identities = 144/201 (72%), Gaps = 2/201 (1%)
Strand=Plus/Plus
Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667
|| ||||| || || || ||||||||||| || || || ||||| | || || || ||
Sbjct 2542725 AAGATGCAAATCTTTGTGAAAACCCTCACCGGCAAGACCATCACCTTGGAGGTCGAGCCC 2542784
Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726
| ||||| | || ||| | || | || || |||||||| || | || |||||
Sbjct 2542785 TCTGACACCATCGAGAATGTCAAGGC-CAAGATCCAAGACAAAGAGGGAATTCCCCCAGA 2542843
Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786
||| |||||||| || || |||||||| || |||||||| | || ||| | ||| ||
Sbjct 2542844 TCAGCAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAAGATGGCCGTACTCTGTCCGACTA 2542903
Query 23787 CAACATACAAAAAGAGTCCAC 23807
|||||| || || ||||| ||
Sbjct 2542904 CAACATCCAGAAGGAGTCGAC 2542924
>seq5
Length=23724088
Score = 95.1 bits (104), Expect = 8e-15
Identities = 143/201 (71%), Gaps = 2/201 (1%)
Strand=Plus/Plus
Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667
|| |||||||||||||| ||||| | || || || || ||||| | |||||||| |
Sbjct 5413569 AAGATGCAGATTTTCGTCAAAACTTTAACTGGCAAGACAATCACCTTGGAAGTTGAGCCT 5413628
Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726
| || || |||| ||| | || | || ||| ||||| || ||| | || |||||
Sbjct 5413629 TCTGATACCATTGAGAATGTCAAGGC-CAAGATTCAGGACAAGGAGGGTATTCCCCCAGA 5413687
Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786
|| |||||||| || ||||| ||||| || || || || | ||| ||| | |||||
Sbjct 5413688 CCAGCAGCGTTTGATTTTTGCTGGCAAGCAGCTTGAGGATGGACGTACTCTTTCTGATTA 5413747
Query 23787 CAACATACAAAAAGAGTCCAC 23807
||||| || || ||||| ||
Sbjct 5413748 TAACATCCAGAAGGAGTCAAC 5413768
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 338009575283048
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |