Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20busckii_20[refseq_20GCF_5F001277935.1_202015-09-02] 6 sequences; 135,748,557 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq2 197 1e-45 >seq2 Length=22510139 Score = 197 bits (218), Expect = 1e-45 Identities = 554/832 (67%), Gaps = 20/832 (2%) Strand=Plus/Minus Query 4259 TTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTC 4318 ||| || ||| ||| ||| || ||||| |||||||| || || |||||||| |||| Sbjct 3319302 TTGATACTCGCCCACTTTCTTCTCAAAGAAGTTAGTTTTTCCGTCCAACGAAATCATTTC 3319243 Query 4319 CATAAAATCAAACGGATTAGTTGCGTTGTA-ATGTTTTTCACACTTTAGAGCTACAAGCA 4377 ||| || || ||||| ||| || || || ||| ||||| || | || |||| Sbjct 3319242 CATGAATGTCAATGGATTCTTTGTATTATAGATTTTTCCCACACCA-AGCTCCACCAGCA 3319184 Query 4378 ATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATC 4437 || ||||| || || || || |||| ||| || ||||||| || ||||| || Sbjct 3319183 GGCGATCAGCCACGAACTCAATGTACTCTGACATCAGAGCGCAGTTCATGCCAATCAAGT 3319124 Query 4438 TCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATAT 4497 | || || || || | ||| | ||||| ||||| || | || || || || || Sbjct 3319123 TAACTGGCAGAGCATCTGTGAGGAACTCCTGTTCAATCTTGACAGCATCCTCAATAATTG 3319064 Query 4498 CTTTTATTTTATCTTTAGATGGTTTATTT-ACTAAGTATCCAAACAATAAACACG-CAAA 4555 | | || || | ||| || || || | | |||| | |||||| |||| Sbjct 3319063 CAATGATGCGCTCACG-GCTGGGACGTTGCACCAAATGGCGGAACA-TCAACACGGCAAA 3319006 Query 4556 ATCACAATGCAAACCTTCGTCTCTGCTA-ATCAGTTCGTTAGAAAACGTTAATCCGGGCA 4614 ||||| ||||| || || || | || | || || || || || || || || || |||| Sbjct 3319005 GTCACAGTGCAAGCCCTCATCGC-GCGAGATTAGCTCATTGGAGAAGGTCAAGCCAGGCA 3318947 Query 4615 TTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTT 4674 | | || | ||| || ||||| || || | ||| || || |||||| ||||| | Sbjct 3318946 TGAGGCCACGCTTCTTTAGCCAGAAAATGGAGGCGAAGCTGCCGCTAAAGAAAATGCCCT 3318887 Query 4675 CTACGGCGGCAAACGCTACTAATCGGGACCCGAACGA--GCTGGCTTTGTCTTTAATCCA 4732 | |||||||| || || | ||||| | | | || | || | ||| | || |||| Sbjct 3318886 CAACGGCGGCGAAGGCAA-TAATCCGCTCGCCAAAGTTGGCAGCCTTGGAGGATA-TCCA 3318829 Query 4733 TTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATA- 4791 | ||||||||||| ||| || ||| || ||| ||||| | || || || || | Sbjct 3318828 TGATAATGCCCAGTCAGCCTTGCGCTTCACAGCCGGCATTGTTTCAATTGCATTGAACAG 3318769 Query 4792 --ATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTC 4849 | | || | || || || | | ||| || || || || | |||||||| || Sbjct 3318768 ATAGTCACGCTGTTGG---GGATCACGGACATACGTATCAATGAGCACACTATACATCTC 3318712 Query 4850 AGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTG 4909 || || | ||| || || |||||||| ||||| |||||||| | || ||||||| || Sbjct 3318711 CGAGTGGACATTCTCCATCGCAATCTGGAATCCATAAAAGCAGCGTGCCTCTGTTATCTG 3318652 Query 4910 AACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAA 4969 ||||| | || ||| | || || | ||| || || || || || ||| |||||| || Sbjct 3318651 CACTTCTTGACTAAAGCGCTCAACCAGGTTCTCATTGACAATGCCATCAGAGGCTGCGAA 3318592 Query 4970 AAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCT-TAAGTTTTTTCCAGTGGG 5028 ||| ||||| ||||| || ||||||| | || | | || |||| || ||||| | Sbjct 3318591 AAATGCCAACACATGTGAAATAAAGTGACGCTCATT-GTCTGTAAGACGTTCCCAGTCAG 3318533 Query 5029 GCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGC 5080 || || |||| | ||| |||||||| ||||||||||| || ||||| || Sbjct 3318532 TCATGTCCTTAGACAGATCCACTTCTTCCACAGTCCAAAATGAGGCTTCGGC 3318481 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427049568771998