Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20busckii_20[refseq_20GCF_5F001277935.1_202015-09-02] 6 sequences; 135,748,557 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq2 262 5e-65 seq1 116 5e-21 >seq2 Length=22510139 Score = 262 bits (290), Expect = 5e-65 Identities = 592/887 (67%), Gaps = 16/887 (2%) Strand=Plus/Minus Query 47795 TTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGA---GACATAACTCCCATTTT 47851 |||||| || ||||||| | ||| |||||| || || | || ||||| Sbjct 3319362 TTAAAAATCTGCATCTAATGTAAACACATTATCCAGACGATTCGAGGTGACACCCATGCG 3319303 Query 47852 TTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTC 47911 |||||| || ||||| ||||| || || |||||||| || ||||| || || |||| Sbjct 3319302 TTGATACTCGCCCACTTTCTTCTCAAAGAAGTTAGTTTTTCCGTCCAACGAAATCATTTC 3319243 Query 47912 CATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAATCCTAATTCTGAAATCAG 47971 ||| || |||||||| || |||||| |||||| | || | || | ||| Sbjct 3319242 CATGAATGTCAATGGATTCTTTGTATTATAGATTTTTCCCACACCAAGCTCCACCAGCAG 3319183 Query 47972 TCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATAAGTTT 48031 | ||| || ||||| || || || | ||||| | || ||||| || || | || Sbjct 3319182 GCGATCAGCCACGAACTCAATGTACTCTGACATCAGAGCGCAGTTCATGCCAATCAAGTT 3319123 Query 48032 AACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTATTAT--C 48089 |||||| ||||| || || || ||||| ||||| || ||||||||||| | || || | Sbjct 3319122 AACTGGCAGAGCATCTGTGAGGAACTCCTGTTCAATCTTGACAGCATCCTCAATAATTGC 3319063 Query 48090 GATGTTACCGTTTCCTCA---CTTGGTGGATACAACAAATGTTTAAACATTAAACATGCA 48146 ||| | | |||| || || | | || |||||| ||||| || ||| Sbjct 3319062 AATGATGC-----GCTCACGGCTGGGACGTTGCACCAAATGGCGGAACATCAACACGGCA 3319008 Query 48147 AAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGC 48206 || ||||| || | || ||||| | |||| || || || || || | || ||| Sbjct 3319007 AAGTCACAGTGCAAGCCCTCATCGCGCGAGATTAGCTCATTGGAGAAGGTCAAGCCAGGC 3318948 Query 48207 ATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCT 48266 || || ||||| || || ||||| || || | ||||| || |||||| ||||| Sbjct 3318947 ATGAGGCCACGCTTCTTTAGCCAGAAAATGGAGGCGAAGCTGCCGCTAAAGAAAATGCCC 3318888 Query 48267 TCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTT---GTGTATCCAC 48323 || ||||| || || || ||| | ||| || | |||| | || | |||||| Sbjct 3318887 TCAACGGCGGCGAAGGCAATAATCCGCTCGCCAAAGTTGGCAGCCTTGGAGGATATCCAT 3318828 Query 48324 CGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGA 48383 | |||||| |||||||| ||| ||| ||||||||||| || ||||| || ||| Sbjct 3318827 GATAATGCCCAGTCAGCCTTGCGCTTCACAGCCGGCATTGTTTCAATTGCATTGAACAGA 3318768 Query 48384 AAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAG 48443 ||| | | | ||| || || ||||| || | | ||||||||| || ||| Sbjct 3318767 TAGTCACGCTGTTGGGGATCACGGACATACGTATCAATGAGCACACTATACATCTCCGAG 3318708 Query 48444 TGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACC 48503 || | ||| || || || ||||| ||||| ||||| || | || ||||| ||||| || Sbjct 3318707 TGGACATTCTCCATCGCAATCTGGAATCCATAAAAGCAGCGTGCCTCTGTTATCTGCACT 3318648 Query 48504 TCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAAT 48563 || || ||| || ||| ||| |||||||| || || |||||| || || |||||| Sbjct 3318647 TCTTGACTAAAGCGCTCAACCAGGTTCTCATTGACAATGCCATCAGAGGCTGCGAAAAAT 3318588 Query 48564 GCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGATA 48623 || || |||||| |||||| | || ||| || || | ||||||| | || Sbjct 3318587 GCCAACACATGTGAAATAAAGTGACGCTCATTGTCTGTAAGACGTTCCCAGTCAGTCATG 3318528 Query 48624 TCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGC 48670 || || || | ||| |||||||| | ||||||||||| || || || Sbjct 3318527 TCCTTAGACAGATCCACTTCTTCCACAGTCCAAAATGAGGCTTCGGC 3318481 >seq1 Length=33300182 Score = 116 bits (128), Expect = 5e-21 Identities = 118/154 (77%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 78753 TTTTTTGTTTCCTTGTGTAGATTAGATACAGCTATTCTTGCAGCTAGAATAGCATAATCA 78812 |||||||| || ||||||||||| || |||||||||||||||||||| | ||||||||| Sbjct 15795767 TTTTTTGTCTCTTTGTGTAGATTGGAAACAGCTATTCTTGCAGCTAGGAGAGCATAATCT 15795826 Query 78813 GGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCCGCTAAAATATCTAACTCTATAGTT 78872 | ||| || || || | |||| || ||||| || ||||| |||| |||||| ||| Sbjct 15795827 GCATGGTGAGTTGTTAAGCTGGCCGCGATTTCAGCTGCTAAGCTATCCAACTCTTGCGTT 15795886 Query 78873 GTGACCCCATTATATAGTCCTTGAATAACTTTCA 78906 || || || || || || | |||||||||| Sbjct 15795887 GTAACACCGCAGTAGAGACCATTTATAACTTTCA 15795920 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694668747899840