Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20busckii_20[refseq_20GCF_5F001277935.1_202015-09-02]
6 sequences; 135,748,557 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq2 262 5e-65
seq1 116 5e-21
>seq2
Length=22510139
Score = 262 bits (290), Expect = 5e-65
Identities = 592/887 (67%), Gaps = 16/887 (2%)
Strand=Plus/Minus
Query 47795 TTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGA---GACATAACTCCCATTTT 47851
|||||| || ||||||| | ||| |||||| || || | || |||||
Sbjct 3319362 TTAAAAATCTGCATCTAATGTAAACACATTATCCAGACGATTCGAGGTGACACCCATGCG 3319303
Query 47852 TTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTC 47911
|||||| || ||||| ||||| || || |||||||| || ||||| || || ||||
Sbjct 3319302 TTGATACTCGCCCACTTTCTTCTCAAAGAAGTTAGTTTTTCCGTCCAACGAAATCATTTC 3319243
Query 47912 CATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAATCCTAATTCTGAAATCAG 47971
||| || |||||||| || |||||| |||||| | || | || | |||
Sbjct 3319242 CATGAATGTCAATGGATTCTTTGTATTATAGATTTTTCCCACACCAAGCTCCACCAGCAG 3319183
Query 47972 TCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATAAGTTT 48031
| ||| || ||||| || || || | ||||| | || ||||| || || | ||
Sbjct 3319182 GCGATCAGCCACGAACTCAATGTACTCTGACATCAGAGCGCAGTTCATGCCAATCAAGTT 3319123
Query 48032 AACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTATTAT--C 48089
|||||| ||||| || || || ||||| ||||| || ||||||||||| | || || |
Sbjct 3319122 AACTGGCAGAGCATCTGTGAGGAACTCCTGTTCAATCTTGACAGCATCCTCAATAATTGC 3319063
Query 48090 GATGTTACCGTTTCCTCA---CTTGGTGGATACAACAAATGTTTAAACATTAAACATGCA 48146
||| | | |||| || || | | || |||||| ||||| || |||
Sbjct 3319062 AATGATGC-----GCTCACGGCTGGGACGTTGCACCAAATGGCGGAACATCAACACGGCA 3319008
Query 48147 AAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGC 48206
|| ||||| || | || ||||| | |||| || || || || || | || |||
Sbjct 3319007 AAGTCACAGTGCAAGCCCTCATCGCGCGAGATTAGCTCATTGGAGAAGGTCAAGCCAGGC 3318948
Query 48207 ATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCT 48266
|| || ||||| || || ||||| || || | ||||| || |||||| |||||
Sbjct 3318947 ATGAGGCCACGCTTCTTTAGCCAGAAAATGGAGGCGAAGCTGCCGCTAAAGAAAATGCCC 3318888
Query 48267 TCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTT---GTGTATCCAC 48323
|| ||||| || || || ||| | ||| || | |||| | || | ||||||
Sbjct 3318887 TCAACGGCGGCGAAGGCAATAATCCGCTCGCCAAAGTTGGCAGCCTTGGAGGATATCCAT 3318828
Query 48324 CGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGA 48383
| |||||| |||||||| ||| ||| ||||||||||| || ||||| || |||
Sbjct 3318827 GATAATGCCCAGTCAGCCTTGCGCTTCACAGCCGGCATTGTTTCAATTGCATTGAACAGA 3318768
Query 48384 AAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAG 48443
||| | | | ||| || || ||||| || | | ||||||||| || |||
Sbjct 3318767 TAGTCACGCTGTTGGGGATCACGGACATACGTATCAATGAGCACACTATACATCTCCGAG 3318708
Query 48444 TGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACC 48503
|| | ||| || || || ||||| ||||| ||||| || | || ||||| ||||| ||
Sbjct 3318707 TGGACATTCTCCATCGCAATCTGGAATCCATAAAAGCAGCGTGCCTCTGTTATCTGCACT 3318648
Query 48504 TCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAAT 48563
|| || ||| || ||| ||| |||||||| || || |||||| || || ||||||
Sbjct 3318647 TCTTGACTAAAGCGCTCAACCAGGTTCTCATTGACAATGCCATCAGAGGCTGCGAAAAAT 3318588
Query 48564 GCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGATA 48623
|| || |||||| |||||| | || ||| || || | ||||||| | ||
Sbjct 3318587 GCCAACACATGTGAAATAAAGTGACGCTCATTGTCTGTAAGACGTTCCCAGTCAGTCATG 3318528
Query 48624 TCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGC 48670
|| || || | ||| |||||||| | ||||||||||| || || ||
Sbjct 3318527 TCCTTAGACAGATCCACTTCTTCCACAGTCCAAAATGAGGCTTCGGC 3318481
>seq1
Length=33300182
Score = 116 bits (128), Expect = 5e-21
Identities = 118/154 (77%), Gaps = 0/154 (0%)
Strand=Plus/Plus
Query 78753 TTTTTTGTTTCCTTGTGTAGATTAGATACAGCTATTCTTGCAGCTAGAATAGCATAATCA 78812
|||||||| || ||||||||||| || |||||||||||||||||||| | |||||||||
Sbjct 15795767 TTTTTTGTCTCTTTGTGTAGATTGGAAACAGCTATTCTTGCAGCTAGGAGAGCATAATCT 15795826
Query 78813 GGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCCGCTAAAATATCTAACTCTATAGTT 78872
| ||| || || || | |||| || ||||| || ||||| |||| |||||| |||
Sbjct 15795827 GCATGGTGAGTTGTTAAGCTGGCCGCGATTTCAGCTGCTAAGCTATCCAACTCTTGCGTT 15795886
Query 78873 GTGACCCCATTATATAGTCCTTGAATAACTTTCA 78906
|| || || || || || | ||||||||||
Sbjct 15795887 GTAACACCGCAGTAGAGACCATTTATAACTTTCA 15795920
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694668747899840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |