Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20busckii_20[refseq_20GCF_5F001277935.1_202015-09-02] 6 sequences; 135,748,557 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq2 248 1e-60 seq1 102 1e-16 >seq2 Length=22510139 Score = 248 bits (274), Expect = 1e-60 Identities = 542/807 (67%), Gaps = 11/807 (1%) Strand=Plus/Minus Query 46360 TTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTCCATAAAATCAAACGGATTA 46419 ||||| || || |||||||| || ||||| || || ||||||| || || ||||| Sbjct 3319283 TTCTCAAAGAAGTTAGTTTTTCCGTCCAACGAAATCATTTCCATGAATGTCAATGGATTC 3319224 Query 46420 GTAACATTATAAAtttttttAAATCCTAATTCTGAAATCAGTCTATCTGCAACGAATTCT 46479 | |||||| |||||| | || | || | ||| | ||| || ||||| || Sbjct 3319223 TTTGTATTATAGATTTTTCCCACACCAAGCTCCACCAGCAGGCGATCAGCCACGAACTCA 3319164 Query 46480 ATATACGTTTTCATCATTTCACAATTCATTCCTATGAGTTTGACCGGTAGAGCCTCCGTA 46539 || ||| | ||||| | || ||||| || || | || || || ||||| || || Sbjct 3319163 ATGTACTCTGACATCAGAGCGCAGTTCATGCCAATCAAGTTAACTGGCAGAGCATCTGTG 3319104 Query 46540 AGAAACTCTTGTTCAATAGTGACAGCATCCGATATTATCGATGTTACTGTTTC-CTCA-- 46596 || ||||| |||||||| ||||||||||| || || | | || | | |||| Sbjct 3319103 AGGAACTCCTGTTCAATCTTGACAGCATCCTCAATAATTG----CAATGATGCGCTCACG 3319048 Query 46597 -CTTGGTGGATGCATCAAATGTTTAAACATTAAACATGCAAAATCACAATGAAGGCCTTC 46655 || || | |||| |||||| ||||| || ||||| ||||| || | ||| || Sbjct 3319047 GCTGGGACGTTGCACCAAATGGCGGAACATCAACACGGCAAAGTCACAGTGCAAGCCCTC 3318988 Query 46656 ATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAG 46715 ||| | |||| || || || || || | |||||||| || |||||||| || || Sbjct 3318987 ATCGCGCGAGATTAGCTCATTGGAGAAGGTCAAGCCAGGCATGAGGCCACGCTTCTTTAG 3318928 Query 46716 CCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCGAC 46775 ||| || || | ||||| || |||||| ||||| || || || ||||| || | Sbjct 3318927 CCAGAAAATGGAGGCGAAGCTGCCGCTAAAGAAAATGCCCTCAACGGCGGCGAAGGCAAT 3318868 Query 46776 AAGTCTCTCTCCGTAACTGGCATCATT--ATGA-ATCCACCTTTGAGCCCAATCAGCCTT 46832 || | ||| || | ||||| | || | || ||||| | ||||| |||||||| Sbjct 3318867 AATCCGCTCGCCAAAGTTGGCAGCCTTGGAGGATATCCATGATAATGCCCAGTCAGCCTT 3318808 Query 46833 TTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGtttttttCATCACTATC 46892 ||| ||| ||||||||||| || ||||| || ||| ||| | | ||| Sbjct 3318807 GCGCTTCACAGCCGGCATTGTTTCAATTGCATTGAACAGATAGTCACGCTGTTGGGGATC 3318748 Query 46893 TTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGCCAT 46952 ||||| ||||| || | | ||||||||| || || || | || || || || || Sbjct 3318747 ACGGACATACGTATCAATGAGCACACTATACATCTCCGAGTGGACATTCTCCATCGCAAT 3318688 Query 46953 CTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTCAGA 47012 ||| ||||| ||||| || | ||| || || ||||| || ||| || ||| || ||| Sbjct 3318687 CTGGAATCCATAAAAGCAGCGTGCCTCTGTTATCTGCACTTCTTGACTAAAGCGCTCAAC 3318628 Query 47013 CAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAA 47072 || |||||||| || || |||||| || || ||||||||||| |||||| |||||| Sbjct 3318627 CAGGTTCTCATTGACAATGCCATCAGAGGCTGCGAAAAATGCCAACACATGTGAAATAAA 3318568 Query 47073 ATATTTTTCATCGGTAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTC 47132 | |||| | || || | ||||||| | || || || || | ||| ||||| Sbjct 3318567 GTGACGCTCATTGTCTGTAAGACGTTCCCAGTCAGTCATGTCCTTAGACAGATCCACTTC 3318508 Query 47133 TTCAGCTGTCCAGAATGACGCCTCTGC 47159 ||| | ||||| ||||| || || || Sbjct 3318507 TTCCACAGTCCAAAATGAGGCTTCGGC 3318481 >seq1 Length=33300182 Score = 102 bits (112), Expect = 1e-16 Identities = 115/154 (75%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 77348 TTTTTTGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATTGCATAGTCA 77407 |||||||| || ||||||||||| || || |||||||| |||||||| | ||||| || Sbjct 15795767 TTTTTTGTCTCTTTGTGTAGATTGGAAACAGCTATTCTTGCAGCTAGGAGAGCATAATCT 15795826 Query 77408 GGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAAAGTATCTAATTCTATAGTA 77467 | ||| || || || || |||| || ||||| || ||||| |||| || ||| || Sbjct 15795827 GCATGGTGAGTTGTTAAGCTGGCCGCGATTTCAGCTGCTAAGCTATCCAACTCTTGCGTT 15795886 Query 77468 GTAACTCCGTTATATAGCCCTTGAATAACTTTCA 77501 ||||| ||| || || || | |||||||||| Sbjct 15795887 GTAACACCGCAGTAGAGACCATTTATAACTTTCA 15795920 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712934346529920