Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20busckii_20[refseq_20GCF_5F001277935.1_202015-09-02] 6 sequences; 135,748,557 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq1 107 4e-18 seq3 105 2e-17 >seq1 Length=33300182 Score = 107 bits (118), Expect = 4e-18 Identities = 151/211 (72%), Gaps = 1/211 (0%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || ||||| ||||| || ||||||||||| |||| | ||| | |||||||| | Sbjct 90678 CAAG-TGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTACGGCCATCTTCCA 90736 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || ||||||||||| | | |||||| || | | ||||| || || ||||| | Sbjct 90737 GCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATTCCCTCTTTGTCTTGGA 90796 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || |||||| |||| | | |||| || ||| || || | || || || |||| Sbjct 90797 TCTTGGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACCTCCAAGGTGATGGTCTTGC 90856 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 | ||||| || ||||| |||| ||||| || Sbjct 90857 CGGTGAGGGTTTTCACAAAGATTTGCATCTT 90887 Score = 107 bits (118), Expect = 4e-18 Identities = 151/211 (72%), Gaps = 1/211 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || ||||| ||||| || ||||||||||| |||| | ||| | |||||||| | Sbjct 2542934 CAAG-TGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTACGGCCATCTTCCA 2542876 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || ||||||||||| | | |||||| || | | ||||| || || ||||| | Sbjct 2542875 GCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATTCCCTCTTTGTCTTGGA 2542816 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || |||||| |||| | | |||| || ||| || || | || || || |||| Sbjct 2542815 TCTTGGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACCTCCAAGGTGATGGTCTTGC 2542756 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 | ||||| || ||||| |||| ||||| || Sbjct 2542755 CGGTGAGGGTTTTCACAAAGATTTGCATCTT 2542725 >seq3 Length=28180402 Score = 105 bits (116), Expect = 2e-17 Identities = 149/208 (72%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||| |||||||| || || |||||||| |||| | ||| | ||||| || | Sbjct 22368585 CAAG-TGAAGGGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCATCCTCCA 22368643 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 || ||||||||||| || | ||||||||| | | ||| || ||||| ||||| | Sbjct 22368644 ACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGGA 22368703 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || || ||| |||| | | |||| ||| || || | || || || |||| Sbjct 22368704 TCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCAACCTCCAAGGTGATGGTCTTGC 22368763 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || || ||||||||||||| |||||| Sbjct 22368764 CAGTCAGGGTCTTCACGAAGATCTGCAT 22368791 Score = 102 bits (112), Expect = 2e-16 Identities = 148/208 (71%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || || |||||||| || || |||||||| |||| | ||| | ||||| || | Sbjct 22368813 CAAG-TGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCATCCTCCA 22368871 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 || ||||||||||| || | ||||||||| | | ||| || ||||| ||||| | Sbjct 22368872 ACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGGA 22368931 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || || ||| |||| | | |||| ||| || || | || || || |||| Sbjct 22368932 TCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCAACCTCCAAGGTGATGGTCTTGC 22368991 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || || ||||||||||||| |||||| Sbjct 22368992 CAGTCAGGGTCTTCACGAAGATCTGCAT 22369019 Score = 102 bits (112), Expect = 2e-16 Identities = 148/208 (71%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || || |||||||| || || |||||||| |||| | ||| | ||||| || | Sbjct 22369041 CAAG-TGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCATCCTCCA 22369099 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 || ||||||||||| || | ||||||||| | | ||| || ||||| ||||| | Sbjct 22369100 ACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGGA 22369159 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || || ||| |||| | | |||| ||| || || | || || || |||| Sbjct 22369160 TCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCAACCTCCAAGGTGATGGTCTTGC 22369219 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || || ||||||||||||| |||||| Sbjct 22369220 CAGTCAGGGTCTTCACGAAGATCTGCAT 22369247 Score = 102 bits (112), Expect = 2e-16 Identities = 148/208 (71%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || || |||||||| || || |||||||| |||| | ||| | ||||| || | Sbjct 22369269 CAAG-TGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCATCCTCCA 22369327 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 || ||||||||||| || | ||||||||| | | ||| || ||||| ||||| | Sbjct 22369328 ACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGGA 22369387 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || || ||| |||| | | |||| ||| || || | || || || |||| Sbjct 22369388 TCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCAACCTCCAAGGTGATGGTCTTGC 22369447 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || || ||||||||||||| |||||| Sbjct 22369448 CAGTCAGGGTCTTCACGAAGATCTGCAT 22369475 Score = 102 bits (112), Expect = 2e-16 Identities = 148/208 (71%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || || |||||||| || || |||||||| |||| | ||| | ||||| || | Sbjct 22369497 CAAG-TGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCATCCTCCA 22369555 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 || ||||||||||| || | ||||||||| | | ||| || ||||| ||||| | Sbjct 22369556 ACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGGA 22369615 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || || ||| |||| | | |||| ||| || || | || || || |||| Sbjct 22369616 TCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCAACCTCCAAGGTGATGGTCTTGC 22369675 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || || ||||||||||||| |||||| Sbjct 22369676 CAGTCAGGGTCTTCACGAAGATCTGCAT 22369703 Score = 102 bits (112), Expect = 2e-16 Identities = 148/208 (71%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || || |||||||| || || |||||||| |||| | ||| | ||||| || | Sbjct 22369725 CAAG-TGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCATCCTCCA 22369783 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 || ||||||||||| || | ||||||||| | | ||| || ||||| ||||| | Sbjct 22369784 ACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGGA 22369843 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || || ||| |||| | | |||| ||| || || | || || || |||| Sbjct 22369844 TCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCAACCTCCAAGGTGATGGTCTTGC 22369903 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || || ||||||||||||| |||||| Sbjct 22369904 CAGTCAGGGTCTTCACGAAGATCTGCAT 22369931 Score = 87.8 bits (96), Expect = 4e-12 Identities = 145/208 (70%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || || || ||||| || || |||||||| |||| | ||| | ||||| || | Sbjct 22369953 CAAG-TGGAGGGTTGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCATCCTCCA 22370011 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 || ||||||||||| || | ||||||||| | | ||| || ||||| ||||| | Sbjct 22370012 ACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGGA 22370071 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || || ||| |||| | | |||| ||| || || | || || || |||| Sbjct 22370072 TCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCAACCTCCAAGGTGATGGTCTTGC 22370131 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || | |||||||| |||| |||||| Sbjct 22370132 CAGTCAATGTCTTCACAAAGATCTGCAT 22370159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153820711300026