Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20busckii_20[refseq_20GCF_5F001277935.1_202015-09-02] 6 sequences; 135,748,557 total letters Query= NC_031761.1 Length=131855 Score E Sequences producing significant alignments: (Bits) Value seq5 84.2 2e-11 seq1 82.4 6e-11 >seq5 Length=23724088 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 |||||||| || ||||| || ||||| ||||| ||||| ||| | || || ||| Sbjct 5413800 ATGCAAATCTTCGTCAAGACCTTGACTGGCAAGACCATCACCCTCGAGGTTGAGCCCTCT 5413859 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| | ||| | || || || ||| ||||| ||||| ||||| ||||| Sbjct 5413860 GATACCATTGAGAACGTTAAGGCCAAGATTCAGGACAAGGAAGGTATTCCCCCAGATCAG 5413919 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 || | | |||| || ||||| || |||| ||| ||| | | |||||||| Sbjct 5413920 CAGCGTTTGATTTTCGCTGGCAAGCAGCTGGAGGATGGACGTACTCTTTCTGATTATAAC 5413979 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111328 || || || || || || || || || |||||||||||||| ||||||| Sbjct 5413980 ATCCAGAAGGAGTCAACCCTCCACTTGGTGTTGCGTCTGCGTGGTGGCA 5414028 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 |||||||| || ||||| || ||||| ||||| ||||| ||| | || || ||| Sbjct 5414028 ATGCAAATCTTCGTCAAGACCTTGACTGGCAAGACCATCACCCTCGAGGTTGAGCCCTCT 5414087 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| | ||| | || || || ||| ||||| ||||| ||||| ||||| Sbjct 5414088 GATACCATTGAGAACGTTAAGGCCAAGATTCAGGACAAGGAAGGTATTCCCCCAGATCAG 5414147 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 || | | |||| || ||||| || |||| ||| ||| | | |||||||| Sbjct 5414148 CAGCGTTTGATTTTCGCTGGCAAGCAGCTGGAGGATGGACGTACTCTTTCTGATTATAAC 5414207 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111328 || || || || || || || || || |||||||||||||| ||||||| Sbjct 5414208 ATCCAGAAGGAGTCAACCCTCCACTTGGTGTTGCGTCTGCGTGGTGGCA 5414256 >seq1 Length=33300182 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 111097 AAAATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCC 111156 || ||||| || || || ||||| | || || || ||||| || | || ||||| Sbjct 5269239 AAGATGCAGATCTTCGTTAAAACCCTTACGGGTAAGACCATCACTCTTGAGGTCGAACCA 5269298 Query 111157 AGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGAT 111216 ||| || | | | || ||| || ||| ||||||||||| |||| ||| Sbjct 5269299 TCGGATACTATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCTCCAGAT 5269358 Query 111217 CAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTAT 111276 |||||| | | || | || ||||| |||||||||||| | ||| || |||| ||| Sbjct 5269359 CAACAACGTTTAATCTTCGCTGGCAAGCAATTGGAAGATGGTCGTACTCTGTCCGACTAT 5269418 Query 111277 AATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 ||||| ||||| || || || || || || ||| | || || || ||||| Sbjct 5269419 AATATTCAAAAGGAGTCCACCCTGCACTTGGTGCTCCGCCTCCGTGGTGG 5269468 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421811169155056