Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20busckii_20[refseq_20GCF_5F001277935.1_202015-09-02] 6 sequences; 135,748,557 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq1 154 4e-32 seq5 145 2e-29 seq3 122 2e-22 >seq1 Length=33300182 Score = 154 bits (170), Expect = 4e-32 Identities = 158/205 (77%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || |||||||| ||||| || || || |||||| | ||||| || ||| ||| Sbjct 90881 CAAATCTTTGTGAAAACCCTCACCGGCAAGACCATCACCTTGGAGGTCGAGCCCTCTGAC 90822 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| ||||| ||||| || |||||||| ||||| || || || ||||| Sbjct 90821 ACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAAGAGGGAATTCCCCCAGATCAGCAG 90762 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||||||||| || ||||| |||||||| | ||||| |||| || ||| || Sbjct 90761 CGTTTGATCTTCGCCGGCAAGCAGCTGGAAGATGGCCGTACTCTGTCCGACTACAACATC 90702 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || ||||| |||| Sbjct 90701 CAGAAGGAGTCGACTCTGCA-CTTG 90678 Score = 154 bits (170), Expect = 4e-32 Identities = 158/205 (77%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || |||||||| ||||| || || || |||||| | ||||| || ||| ||| Sbjct 2542731 CAAATCTTTGTGAAAACCCTCACCGGCAAGACCATCACCTTGGAGGTCGAGCCCTCTGAC 2542790 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| ||||| ||||| || |||||||| ||||| || || || ||||| Sbjct 2542791 ACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAAGAGGGAATTCCCCCAGATCAGCAG 2542850 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||||||||| || ||||| |||||||| | ||||| |||| || ||| || Sbjct 2542851 CGTTTGATCTTCGCCGGCAAGCAGCTGGAAGATGGCCGTACTCTGTCCGACTACAACATC 2542910 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || ||||| |||| Sbjct 2542911 CAGAAGGAGTCGACTCTGCA-CTTG 2542934 Score = 141 bits (156), Expect = 2e-28 Identities = 155/205 (76%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| ||||| || || || || || ||||| || ||||| ||| || || Sbjct 5269245 CAGATCTTCGTTAAAACCCTTACGGGTAAGACCATCACTCTTGAGGTCGAACCATCGGAT 5269304 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || |||||| ||||||||||||||||||||||| ||||| || || ||| Sbjct 5269305 ACTATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCTCCAGATCAACAA 5269364 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||| || || || | |||||||| | ||||| |||| ||||| | Sbjct 5269365 CGTTTAATCTTCGCTGGCAAGCAATTGGAAGATGGTCGTACTCTGTCCGACTATAATATT 5269424 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 ||||| || || || ||||| |||| Sbjct 5269425 CAAAAGGAGTCCACCCTGCA-CTTG 5269448 >seq5 Length=23724088 Score = 145 bits (160), Expect = 2e-29 Identities = 156/205 (76%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || | || || || || |||||||||||||| || ||| || Sbjct 5413803 CAAATCTTCGTCAAGACCTTGACTGGCAAGACCATCACCCTCGAGGTTGAGCCCTCTGAT 5413862 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| |||||||| || |||||||||||||| ||||| || || || || ||||| Sbjct 5413863 ACCATTGAGAACGTTAAGGCCAAGATTCAGGACAAGGAAGGTATTCCCCCAGATCAGCAG 5413922 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || ||||| || || ||||| || |||||| | |||||| | ||||||||| || Sbjct 5413923 CGTTTGATTTTCGCTGGCAAGCAGCTGGAGGATGGACGTACTCTTTCTGATTATAACATC 5413982 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || ||||| || || |||| Sbjct 5413983 CAGAAGGAGTCAACCCTCCA-CTTG 5414006 Score = 145 bits (160), Expect = 2e-29 Identities = 156/205 (76%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || | || || || || |||||||||||||| || ||| || Sbjct 5414031 CAAATCTTCGTCAAGACCTTGACTGGCAAGACCATCACCCTCGAGGTTGAGCCCTCTGAT 5414090 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| |||||||| || |||||||||||||| ||||| || || || || ||||| Sbjct 5414091 ACCATTGAGAACGTTAAGGCCAAGATTCAGGACAAGGAAGGTATTCCCCCAGATCAGCAG 5414150 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || ||||| || || ||||| || |||||| | |||||| | ||||||||| || Sbjct 5414151 CGTTTGATTTTCGCTGGCAAGCAGCTGGAGGATGGACGTACTCTTTCTGATTATAACATC 5414210 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || ||||| || || |||| Sbjct 5414211 CAGAAGGAGTCAACCCTCCA-CTTG 5414234 Score = 140 bits (154), Expect = 8e-28 Identities = 157/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || | || || || || |||||||||||||| || ||| || Sbjct 5414259 CAAATCTTCGTCAAGACCTTGACTGGCAAGACCATCACCCTCGAGGTTGAGCCCTCTGAT 5414318 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| |||||||| || |||||||||||||| ||||| || || || || ||||| Sbjct 5414319 ACCATTGAGAACGTTAAGGCCAAGATTCAGGACAAGGAAGGTATTCCCCCAGATCAGCAG 5414378 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || ||||| || || ||||| || |||||| | |||||| | || || || || Sbjct 5414379 CGTTTGATTTTCGCTGGCAAGCAGCTGGAGGATGGACGTACTCTTTCTGACTACAATATC 5414438 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTG 178133 || || || ||||| || ||| | |||||| Sbjct 5414439 CAGAAGGAGTCAACCCTCCATTTGGTTTTG 5414468 Score = 132 bits (146), Expect = 1e-25 Identities = 153/205 (75%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| |||||| | || || || || |||||| | || || || || || Sbjct 5413575 CAGATTTTCGTCAAAACTTTAACTGGCAAGACAATCACCTTGGAAGTTGAGCCTTCTGAT 5413634 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||| ||||| |||||||||||||| || || || || || |||||||| Sbjct 5413635 ACCATTGAGAATGTCAAGGCCAAGATTCAGGACAAGGAGGGTATTCCCCCAGACCAGCAG 5413694 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || || || || ||||| || |||||| | |||||| | ||||||||| || Sbjct 5413695 CGTTTGATTTTTGCTGGCAAGCAGCTTGAGGATGGACGTACTCTTTCTGATTATAACATC 5413754 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || ||||| || || |||| Sbjct 5413755 CAGAAGGAGTCAACCCTCCA-CTTG 5413778 >seq3 Length=28180402 Score = 122 bits (134), Expect = 2e-22 Identities = 155/210 (74%), Gaps = 5/210 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || || || || || || |||||| | ||||| || || ||| Sbjct 22368788 CAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCTTGGAGGTTGA--GCCCAGCG 22368731 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||| || || ||||| || ||||| || || ||||| || ||||||| Sbjct 22368730 ACACCATTGAGAATGTGAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAGC 22368671 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | || || ||||||||||| || ||| | || |||||| | ||||| |||| || ||| Sbjct 22368670 AGCGTCTGATCTTCGCCGGCAAGCAGTTGGAGGATGGACGCACTCTGTCCGACTACAACA 22368611 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTT 178131 | || || || || || || || |||| || Sbjct 22368610 TTCAGAAGGAGTCTACCCTTCA-CTTGGTT 22368582 Score = 122 bits (134), Expect = 2e-22 Identities = 153/207 (74%), Gaps = 5/207 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || || || || || || |||||| | ||||| || || ||| Sbjct 22369016 CAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCTTGGAGGTTGA--GCCCAGCG 22368959 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||| || || ||||| || ||||| || || ||||| || ||||||| Sbjct 22368958 ACACCATTGAGAATGTGAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAGC 22368899 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | || || ||||||||||| || ||| | || |||||| | ||||| |||| || ||| Sbjct 22368898 AGCGTCTGATCTTCGCCGGCAAGCAGTTGGAGGATGGACGCACTCTGTCCGACTACAACA 22368839 Query 178102 TCCAAAAAGAATCAACACTGCATCTTG 178128 | || || || || || || || |||| Sbjct 22368838 TTCAGAAGGAGTCTACCCTCCA-CTTG 22368813 Score = 122 bits (134), Expect = 2e-22 Identities = 153/207 (74%), Gaps = 5/207 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || || || || || || |||||| | ||||| || || ||| Sbjct 22369244 CAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCTTGGAGGTTGA--GCCCAGCG 22369187 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||| || || ||||| || ||||| || || ||||| || ||||||| Sbjct 22369186 ACACCATTGAGAATGTGAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAGC 22369127 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | || || ||||||||||| || ||| | || |||||| | ||||| |||| || ||| Sbjct 22369126 AGCGTCTGATCTTCGCCGGCAAGCAGTTGGAGGATGGACGCACTCTGTCCGACTACAACA 22369067 Query 178102 TCCAAAAAGAATCAACACTGCATCTTG 178128 | || || || || || || || |||| Sbjct 22369066 TTCAGAAGGAGTCTACCCTCCA-CTTG 22369041 Score = 122 bits (134), Expect = 2e-22 Identities = 153/207 (74%), Gaps = 5/207 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || || || || || || |||||| | ||||| || || ||| Sbjct 22369472 CAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCTTGGAGGTTGA--GCCCAGCG 22369415 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||| || || ||||| || ||||| || || ||||| || ||||||| Sbjct 22369414 ACACCATTGAGAATGTGAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAGC 22369355 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | || || ||||||||||| || ||| | || |||||| | ||||| |||| || ||| Sbjct 22369354 AGCGTCTGATCTTCGCCGGCAAGCAGTTGGAGGATGGACGCACTCTGTCCGACTACAACA 22369295 Query 178102 TCCAAAAAGAATCAACACTGCATCTTG 178128 | || || || || || || || |||| Sbjct 22369294 TTCAGAAGGAGTCTACCCTCCA-CTTG 22369269 Score = 122 bits (134), Expect = 2e-22 Identities = 153/207 (74%), Gaps = 5/207 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || || || || || || |||||| | ||||| || || ||| Sbjct 22369700 CAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCTTGGAGGTTGA--GCCCAGCG 22369643 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||| || || ||||| || ||||| || || ||||| || ||||||| Sbjct 22369642 ACACCATTGAGAATGTGAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAGC 22369583 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | || || ||||||||||| || ||| | || |||||| | ||||| |||| || ||| Sbjct 22369582 AGCGTCTGATCTTCGCCGGCAAGCAGTTGGAGGATGGACGCACTCTGTCCGACTACAACA 22369523 Query 178102 TCCAAAAAGAATCAACACTGCATCTTG 178128 | || || || || || || || |||| Sbjct 22369522 TTCAGAAGGAGTCTACCCTCCA-CTTG 22369497 Score = 122 bits (134), Expect = 2e-22 Identities = 153/207 (74%), Gaps = 5/207 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || || || || || || |||||| | ||||| || || ||| Sbjct 22369928 CAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCTTGGAGGTTGA--GCCCAGCG 22369871 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||| || || ||||| || ||||| || || ||||| || ||||||| Sbjct 22369870 ACACCATTGAGAATGTGAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAGC 22369811 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | || || ||||||||||| || ||| | || |||||| | ||||| |||| || ||| Sbjct 22369810 AGCGTCTGATCTTCGCCGGCAAGCAGTTGGAGGATGGACGCACTCTGTCCGACTACAACA 22369751 Query 178102 TCCAAAAAGAATCAACACTGCATCTTG 178128 | || || || || || || || |||| Sbjct 22369750 TTCAGAAGGAGTCTACCCTCCA-CTTG 22369725 Score = 116 bits (128), Expect = 9e-21 Identities = 152/207 (73%), Gaps = 5/207 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || ||||| || | || || || || |||||| | ||||| || || ||| Sbjct 22370156 CAGATCTTTGTGAAGACATTGACTGGCAAGACCATCACCTTGGAGGTTGA--GCCCAGCG 22370099 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||| || || ||||| || ||||| || || ||||| || ||||||| Sbjct 22370098 ACACCATTGAGAATGTGAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAGC 22370039 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | || || ||||||||||| || ||| | || |||||| | ||||| |||| || ||| Sbjct 22370038 AGCGTCTGATCTTCGCCGGCAAGCAGTTGGAGGATGGACGCACTCTGTCCGACTACAACA 22369979 Query 178102 TCCAAAAAGAATCAACACTGCATCTTG 178128 | || || || ||||| || || |||| Sbjct 22369978 TTCAGAAGGAGTCAACCCTCCA-CTTG 22369953 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203731107463164