Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20busckii_20[refseq_20GCF_5F001277935.1_202015-09-02] 6 sequences; 135,748,557 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq3 149 6e-31 seq5 109 5e-19 seq1 100 3e-16 >seq3 Length=28180402 Score = 149 bits (164), Expect = 6e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||||| || || || ||||||||||||||| |||||||| Sbjct 22368793 CCACCACGCAGACGGAGCACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGAC 22368852 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| | || || | ||||||||||||||| ||||| ||||| ||||| | ||| Sbjct 22368853 AGAGTGCGTCCATCCTCCAACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGG 22368912 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | || ||||||||| ||| || ||||| | | |||||||| | ||| ||| Sbjct 22368913 ATGCCCTCCTTGTCTTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCAACC 22368972 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| || || || || || ||||| ||||| ||||| |||||||| Sbjct 22368973 TCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 22369019 Score = 149 bits (164), Expect = 6e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||||| || || || ||||||||||||||| |||||||| Sbjct 22369021 CCACCACGCAGACGGAGCACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGAC 22369080 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| | || || | ||||||||||||||| ||||| ||||| ||||| | ||| Sbjct 22369081 AGAGTGCGTCCATCCTCCAACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGG 22369140 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | || ||||||||| ||| || ||||| | | |||||||| | ||| ||| Sbjct 22369141 ATGCCCTCCTTGTCTTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCAACC 22369200 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| || || || || || ||||| ||||| ||||| |||||||| Sbjct 22369201 TCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 22369247 Score = 149 bits (164), Expect = 6e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||||| || || || ||||||||||||||| |||||||| Sbjct 22369249 CCACCACGCAGACGGAGCACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGAC 22369308 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| | || || | ||||||||||||||| ||||| ||||| ||||| | ||| Sbjct 22369309 AGAGTGCGTCCATCCTCCAACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGG 22369368 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | || ||||||||| ||| || ||||| | | |||||||| | ||| ||| Sbjct 22369369 ATGCCCTCCTTGTCTTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCAACC 22369428 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| || || || || || ||||| ||||| ||||| |||||||| Sbjct 22369429 TCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 22369475 Score = 149 bits (164), Expect = 6e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||||| || || || ||||||||||||||| |||||||| Sbjct 22369477 CCACCACGCAGACGGAGCACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGAC 22369536 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| | || || | ||||||||||||||| ||||| ||||| ||||| | ||| Sbjct 22369537 AGAGTGCGTCCATCCTCCAACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGG 22369596 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | || ||||||||| ||| || ||||| | | |||||||| | ||| ||| Sbjct 22369597 ATGCCCTCCTTGTCTTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCAACC 22369656 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| || || || || || ||||| ||||| ||||| |||||||| Sbjct 22369657 TCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 22369703 Score = 149 bits (164), Expect = 6e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||||| || || || ||||||||||||||| |||||||| Sbjct 22369705 CCACCACGCAGACGGAGCACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGAC 22369764 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| | || || | ||||||||||||||| ||||| ||||| ||||| | ||| Sbjct 22369765 AGAGTGCGTCCATCCTCCAACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGG 22369824 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | || ||||||||| ||| || ||||| | | |||||||| | ||| ||| Sbjct 22369825 ATGCCCTCCTTGTCTTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCAACC 22369884 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| || || || || || ||||| ||||| ||||| |||||||| Sbjct 22369885 TCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 22369931 Score = 143 bits (158), Expect = 2e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||| || || || ||||||||||||||| |||||||| Sbjct 22368565 CCACCACGCAGACGGAGAACCAAGTGAAGGGTAGACTCCTTCTGAATGTTGTAGTCGGAC 22368624 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| | || || | ||||||||||||||| ||||| ||||| ||||| | ||| Sbjct 22368625 AGAGTGCGTCCATCCTCCAACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGG 22368684 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | || ||||||||| ||| || ||||| | | |||||||| | ||| ||| Sbjct 22368685 ATGCCCTCCTTGTCTTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCAACC 22368744 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| || || || || || ||||| ||||| ||||| |||||||| Sbjct 22368745 TCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 22368791 Score = 141 bits (156), Expect = 9e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||||| || || || ||||||||||||||| |||||||| Sbjct 22369933 CCACCACGCAGACGGAGCACCAAGTGGAGGGTTGACTCCTTCTGAATGTTGTAGTCGGAC 22369992 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| | || || | ||||||||||||||| ||||| ||||| ||||| | ||| Sbjct 22369993 AGAGTGCGTCCATCCTCCAACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGG 22370052 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | || ||||||||| ||| || ||||| | | |||||||| | ||| ||| Sbjct 22370053 ATGCCCTCCTTGTCTTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCAACC 22370112 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||| || || || || || |||| ||||| || || ||||||||| Sbjct 22370113 TCCAAGGTGATGGTCTTGCCAGTCAATGTCTTCACAAAGATCTGCATG 22370160 >seq5 Length=23724088 Score = 109 bits (120), Expect = 5e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 |||||||| ||||| || |||| ||| || || ||||||||| || || ||||| || Sbjct 5414482 CCGCCGCGAAGACGCAAAACCAAATGGAGGGTTGACTCCTTCTGGATATTGTAGTCAGAA 5414423 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || | || || ||||||||||| ||||| |||| ||||| || || | |||| Sbjct 5414422 AGAGTACGTCCATCCTCCAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGATCTGGGGGA 5414363 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACG-ACGACACAGTGTCGCTCGACTCCAC 41814 | | ||||||||| ||| | || || | |||| | | || || | ||| || Sbjct 5414362 ATACCTTCCTTGTCC-TGAATCTTGGCCTTAACGTTCTCAATGGTATCAGAGGGCTCAAC 5414304 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||| | || || || || || |||| ||||| ||||| || |||||| Sbjct 5414303 CTCGAGGGTGATGGTCTTGCCAGTCAAGGTCTTGACGAAGATTTGCATG 5414255 Score = 105 bits (116), Expect = 6e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| ||||||| || || || ||||||||| |||||||| || || Sbjct 5414027 GCCACCACGCAGACGCAACACCAAGTGGAGGGTTGACTCCTTCTGGATGTTATAATCAGA 5413968 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || || || | || || ||||||||||| ||||| |||| ||||| || || | ||| Sbjct 5413967 AAGAGTACGTCCATCCTCCAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGATCTGGGGG 5413908 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACG-ACGACACAGTGTCGCTCGACTCCA 41813 || | ||||||||| ||| | || || | |||| | | || || | ||| | Sbjct 5413907 AATACCTTCCTTGTCC-TGAATCTTGGCCTTAACGTTCTCAATGGTATCAGAGGGCTCAA 5413849 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||| | || || || || || |||| ||||| ||||| || |||||| Sbjct 5413848 CCTCGAGGGTGATGGTCTTGCCAGTCAAGGTCTTGACGAAGATTTGCATG 5413799 Score = 105 bits (116), Expect = 6e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| ||||||| || || || ||||||||| |||||||| || || Sbjct 5414255 GCCACCACGCAGACGCAACACCAAGTGGAGGGTTGACTCCTTCTGGATGTTATAATCAGA 5414196 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || || || | || || ||||||||||| ||||| |||| ||||| || || | ||| Sbjct 5414195 AAGAGTACGTCCATCCTCCAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGATCTGGGGG 5414136 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACG-ACGACACAGTGTCGCTCGACTCCA 41813 || | ||||||||| ||| | || || | |||| | | || || | ||| | Sbjct 5414135 AATACCTTCCTTGTCC-TGAATCTTGGCCTTAACGTTCTCAATGGTATCAGAGGGCTCAA 5414077 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||| | || || || || || |||| ||||| ||||| || |||||| Sbjct 5414076 CCTCGAGGGTGATGGTCTTGCCAGTCAAGGTCTTGACGAAGATTTGCATG 5414027 Score = 100 bits (110), Expect = 3e-16 Identities = 163/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| ||||||| || || || ||||||||| |||||||| || || Sbjct 5413799 GCCACCACGCAGACGCAACACCAAGTGGAGGGTTGACTCCTTCTGGATGTTATAATCAGA 5413740 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || || || | || || ||||||||||| || || |||| ||||| ||||| | ||| Sbjct 5413739 AAGAGTACGTCCATCCTCAAGCTGCTTGCCAGCAAAAATCAAACGCTGCTGGTCTGGGGG 5413680 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTG-CTTCAACGACGACACAGTGTCGCTCGACTCCA 41813 || | |||||||||| ||| | || | ||| | | | || || | ||| | Sbjct 5413679 AATACCCTCCTTGTCC-TGAATCTTGGCCTTGACATTCTCAATGGTATCAGAAGGCTCAA 5413621 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 | |||| || || || || || || | || || |||||||||||||| || Sbjct 5413620 CTTCCAAGGTGATTGTCTTGCCAGTTAAAGTTTTGACGAAAATCTGCATCTT 5413569 >seq1 Length=33300182 Score = 100 bits (110), Expect = 3e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||||| ||||| || ||||||||| ||||| |||||||| Sbjct 90658 CCACCACGCAGACGGAGCACCAAGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAC 90717 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || | || || ||||||||||||||||| |||| ||||| || || | |||| Sbjct 90718 AGAGTACGGCCATCTTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGA 90777 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | | ||| ||||| ||| || ||| | | | ||||| | ||| ||| Sbjct 90778 ATTCCCTCTTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACC 90837 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 |||| || || || || || || || || || || || || ||||| || Sbjct 90838 TCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTCACAAAGATTTGCATCTT 90887 Score = 100 bits (110), Expect = 3e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||||| ||||| || ||||||||| ||||| |||||||| Sbjct 2542954 CCACCACGCAGACGGAGCACCAAGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAC 2542895 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || | || || ||||||||||||||||| |||| ||||| || || | |||| Sbjct 2542894 AGAGTACGGCCATCTTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGA 2542835 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | | ||| ||||| ||| || ||| | | | ||||| | ||| ||| Sbjct 2542834 ATTCCCTCTTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACC 2542775 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 |||| || || || || || || || || || || || || ||||| || Sbjct 2542774 TCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTCACAAAGATTTGCATCTT 2542725 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | ||||| ||||| ||| |||||| ||||| ||||||||||| Sbjct 5269468 CCACCACGGAGGCGGAGCACCAAGTGCAGGGTGGACTCCTTTTGAATATTATAGTCGGAC 5269409 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || | || || | |||||||| ||||| || | || ||||| || | ||| Sbjct 5269408 AGAGTACGACCATCTTCCAATTGCTTGCCAGCGAAGATTAAACGTTGTTGATCTGGAGGA 5269349 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | || |||||| ||| | || |||| || | | ||| || | || || Sbjct 5269348 ATTCCTTCTTTGTCC-TGAATCTTGGCTTTGACATTTTCGATAGTATCCGATGGTTCGAC 5269290 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTTA 41866 ||| | || || || |||||||| || || || ||||| |||||||| ||| Sbjct 5269289 CTCAAGAGTGATGGTCTTACCCGTAAGGGTTTTAACGAAGATCTGCATCTTA 5269238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462303965327200