Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq5242 145 8e-30 seq5375 111 2e-19 >seq5242 Length=5320397 Score = 145 bits (160), Expect = 8e-30 Identities = 299/441 (68%), Gaps = 4/441 (1%) Strand=Plus/Plus Query 16955 AACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAA 17014 |||||||| ||||| || || || ||||||||||| | | ||| || ||||| || Sbjct 3387971 AACATCAGCACGGCGAAGTCACAGTGCAATCCCTCGTCGCGGGAGATCAGCTCGTTGGAG 3388030 Query 17015 AATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCA 17074 || |||| || |||||| || || ||||| | ||| || || | |||||| || Sbjct 3388031 AAGGTCAGTCCCGGCATCAGACCGCGCTTCTTCAGCCAGAAAATGGAGGCGAAGCTGCCG 3388090 Query 17075 GAAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGC-GTC 17133 ||||| || ||||| |||| ||||| ||||| | || || || | | || | | Sbjct 3388091 CTGAAGAAGATGCCCTCCACGGCGGCAAATGCGATGATGCGCTCCCCGAAATTGGCCGAC 3388150 Query 17134 TTTGTTACGA-ATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTT 17192 || | | || ||||| | | |||| || || || |||| | |||||| | Sbjct 3388151 TTGG--AGGAGATCCAGGACAGAGCCCAGTCAGCCTTGCGCTTCACCGCCGGCATCGTCT 3388208 Query 17193 CTATGGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTA 17252 | ||||| || || | | ||| | || | || || || || ||||| || | Sbjct 3388209 CGATGGCGTTGAACAGGTACTCCCGCTGGTGCGGATCCCGGATGTAAGTGTCGATCAGCA 3388268 Query 17253 GGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGG 17312 ||||||||| || ||||| | |||||||||||| ||||| || ||||| ||||| |||| Sbjct 3388269 CGCTGTACATCTCCGAGTGCACGTTCTCCATGGCGATCTGGAAGCCGTAGAAGCAGCGGG 3388328 Query 17313 CTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGT 17372 | |||| || || || ||| | ||| || ||| | || || || || |||||||| | Sbjct 3388329 CCTCCGTGATCTGCACCTCCTGGCTGAACCGCTCCACCAGGTTCTCATTGACGATGCCAT 3388388 Query 17373 CGCTCGCGGCGAAAAACGCCA 17393 || ||||| || || |||| Sbjct 3388389 CGGAGGCGGCAAAGAAGGCCA 3388409 >seq5375 Length=646746 Score = 111 bits (122), Expect = 2e-19 Identities = 179/255 (70%), Gaps = 2/255 (1%) Strand=Plus/Minus Query 119783 TTCATATATCGTATCTTTCCGAACACGGTACGTTCCTTCCACGCTCTGTCGTGGAGCCCC 119842 ||||| || || | ||| ||||| | || || |||||||| | | ||||||| || Sbjct 627982 TTCATGTACCGAACCTTGCCGAAAATGGCGCGCTCCTTCCATCCCATATCGTGGACGCCG 627923 Query 119843 GCTACGGCCCATAGGCATCCCACGTATCCGTTGGGATCCGTTCCATCTAACTCGTATTTA 119902 | | || ||| | ||| |||||||| ||||||||||| |||||| | ||| || Sbjct 627922 CCGATGGACCACATGCAGCCCACGTAGCCGTTGGGATCGCGTCCATCAAGGCTGTACTTG 627863 Query 119903 TCGTTTAAGTAGATACAG-ACGCTTAACGCACTTTCAGGAGTCTCGCTCCATTCCAGTAt 119961 ||||||| ||| | || | | ||| ||| || || || ||||||| || || Sbjct 627862 TCGTTTAGCAGGATCGCGTACTCC-AGCGCCAGTTCCGGCGTGGCGGTCCATTCGAGAAT 627804 Query 119962 ttttttAGCCCAGTACATACGTAAGTATCCATGCATTTTACCTTCACGAACCATTTGAAG 120021 ||||| ||||||||||| || ||| | || ||||| || || || || |||| || || Sbjct 627803 CTTTTTGGCCCAGTACATGCGCAAGAAGCCGTGCATCTTGCCCTCGCGCACCAGCTGCAG 627744 Query 120022 TTGTGCGGCGTTCCA 120036 ||| || | |||||| Sbjct 627743 TTGCGCCGAGTTCCA 627729 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517510478061720